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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL77490_cuf2 >transcript:BL77490_cuf2-protein ID=transcript:BL77490_cuf2-protein|Name=transcript:BL77490_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=242bp
MSSFFFSLTRHELTECCDVESSVLTKQNVKVGDVLPNVLNRKMPLKISRD
VYRVLPKESPFRNKHFQTCAVVGNSGILRGSRCGASIDSAEAVFRCNLPP
LGKQIYRKDAGVKSTFTTAPLSMLKSYMQMKDKSVREKFIKDVEPYRGIL
SLKKPNNYTNYMISSVESTMGDSLEAVYEHPNHFLCIDNYWSNHGLPRKI
TSGIYIISMALTVCDEVNVYGFWPFPRDDKGHKVHYHYYKAP Run BLAST on NCBI mRNA from alignment at Sc0000026:1452028..1456296+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL77490_cuf2 ID=transcript:BL77490_cuf2|Name=transcript:BL77490_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4269bp|location=Sequence derived from alignment at Sc0000026:1452028..1456296+ (Branchiostoma lanceolatum)
TGTACTGATTCGCGAAGTCTTTCGCGGCTTTCTGACCCAATCGCTGGGTT
TTATTCGCCTCTGACGTCATCAATGGGTCAAAGGTTGCTGGGAGTCGATA
CCGCTCACCGTTTCGGCATATCATGTTTGGTTTCGGGTTTTGGTTTTTGG
TTCCGTCCTATAGTTCAGCTATAAACTCTAAGGAAATTCTGTATTCTATA
TCATTACCATTTTAAACCTTTTCGTACACATACGACAAAATTGCTAAGGT
TAGGAAACACAAATTATGTCCAGTTTTTTTTTTTCTCTCACTAGGCATGA
GTTGACAGAGTGCTGTGACGTTGAGTCGTCCGTTCTTACCAAACAAAACG
TCAAAGTGGGTGACGTGCTGCCAAACGTGCTCAACCGAAAAATGCCTCTA
AAAATAAGCAGGGATGTCTACAGAGTCTTACCAAAGGTACCGTTAACCGC
TATAAACCAGTATGGAAATTTCCAATGGTTTCAAAGGATCGTCTCAACAA
GCCGGTTGACGGTTTAAACGGAGCATGCGCGAGTTCAATGAAGTCCCCTA
ACTAGTAAACAGTTCTTGTCTAGACCATGCTTGATGTCCAGATGTGTTTT
GTTTACTTCAGAAAATAATTTTGGTAGGTAGAACATAGGATATTGGATTC
ACCAGTCACTTTTATTTGCTGACGTTTCAGTGTCTGTCAGACACCTTCTT
CGGAGCTAATCTGCCTGGAGTACGTACTGCTTCTCGCCGCTATAAGTGGC
CGATGTAGGTGGCACTTTTTCGGCGAGAACACAATCCCAAATGCGGCTAA
GCTTGTATCCCCCCTCGTCCCGGTCCATCACTGGTGTTGAATTTCTTATC
CAGACATCCTCCTTCATCCATCGGCTGCGTCCGTTGGAGCAGTACTCCAG
TCAGAAGCTCTGAAGATGGTGTCTGACAGACATCGAAAGGTCAGCAGGTA
ATAAGTGACTGGTTGTGTAAAACGAAAACTCCAATATCATGTGCGCATGC
TTTGTTTATGTTTTAGGGTCCTTATTGCTTAATATTTAACAAGCAATGCT
TGAGCAGTTTGAACCGTGAATCGTCTGTAGGGACGATCCTTTGAAATCAA
ACATACCGTTGGTCCGCTTCCAACACAACACAACACAACACAAAGCAGAG
AACTCAGGGTACGAATTTCAGCCACTTCGTTGGCGTTCTTCAGGTAGGAT
GACCCATGCGCCTCTTAACGTGTGAAGAAGAAAAAGAAACACCTGTATTG
CTTTCTCTTTCCGCACAGGAATCTCCTTTCAGAAATAAACATTTCCAGAC
GTGTGCAGTAGTGGGAAACAGCGGTATACTGCGGGGGAGTCGGTGTGGTG
CATCCATCGACAGCGCTGAAGCCGTGTTCAGGTGGTCATTTTAGAGCTGT
CAGTACTAGGCATGATTGGAAAAGGTGGAATTGGCACAGGTTAATTAAAT
CAGCTCACCTGTCAATCAAAATGAGCCCGTTGACGAATCCAACTGAGCAT
GCGCAGGTTAAAGGTGAAGCCCTCTGATTTGTACACAGTTCTTGTCTCGA
CCATGCTTTTTACACGTTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTATGTATATATATATATATATATATATGGCCTCCGT
CAGTCATTGGCATAATAAGGCCCACGCGTGTTCTTTTTATGTCTCGGGGC
CTCTTACCTTACGCATGCTCACGTACAACCGTGAACCTCCTATATTTAGA
ACAAAACCTTCAACTTGATATTGTTTCATAAAATATGCATATTAAGCCAA
CTAAATAATTGCTGTTTTTGTTACCCCAACGGTTTTTATTTTAGGTGTAA
CTTGCCGCCATTGGGTAAGCAGATTTACAGGAAGGATGCTGGGGTTAAGT
CGACCTTCACCACGGCCCCTCTATCCATGCTAAAATCGTAAGTGGTGACA
GTCGATCATATCAAACTAACTCTTCCAAAATTACCATAAAATCTATGATT
TTACTTCCAGCTTGAGGTTTTTGAAATGTCCGCTACATACAGTACGTGCA
ATATACATTAAATGGAGATTGTCTAGCAAATTTATGAATCTATTGCAAAT
GAAGTTTTATCTATCATTAAGGTCGCAAACTGTTGTACATGTCTGTTACA
GGTACATGCAAATGAAGGACAAGTCTGTACGGGAGAAGTTTATAAAGGAC
GTGGAGCCATACCGAGGAATCCTGTCATTAAAGAAACCCAACAGTGAGGG
AAACATATTGACTAGTACAATCCTCTCATGCCATTTGTCATCCGTAATTA
GGTTAATCAACGCACGTCAAAATGCAATATGATTGGCCGATGATTTTTCC
TTCAACAATGGGAGGGGGAGTCTCTAATAGCCGGTGACGGCTGGCTATCT
AGCGCTAACGCAGCGAAAATCAGGAAAGCAGGCCGGTAGGCCACGGCCAA
TACTTGATTTGATATAAAGCATATTAAGTGATGGCCGTGGCGTACCGGCC
TGCGTTACTGACTTTTCGAAACAACACCCGCTTCTGGGCTTGACTATGCC
TTTAAAGAATGATTCATGTTGCGAATTACATGGTAGCCACATGAATGTTT
TACAATTACTCTTCTTGCAATTAAAACTAATTTCTGGCGTCACGTGTTCA
TAAGGTCATTGTGCTTGGTCATTCAAAGTTTAGGAAGGTTTCAGGACTGT
GAGAAACTTTGAAGTTTGCTAATTGCTAATTGTAGATAAGAAACAGATAA
GAAGCTTACACTTATTAATGAAAGTTTATAGCAAATTCCTACCCGTAGGC
TAATTGCAAGTACATGTACATGTAACACGGAGTGGACGGACAGACAATGA
TGAACAATGTAACATATGACTACTATAGTCTTAGCTACTGACACTAAGTT
CTAACTTATTGGGTTCGGCTTCTTTTTCCGAGACAGTGGAAAACGAATGA
TTCCACTTTTTCTGTTATATGTGGGTTTTGTAATGTTAAGAGGAGAGGAG
TTTTTTTTTCGTCTGAAAACGTGGAGAAATCAGGATGGAAAATGGTGGCC
TCTTTAAACAGCTCATTTCTTTCGTGGTCGTAGAATATTTGAATGGGCAA
CTTGACATAAAATGTGTTTCGTCTTCCACCTTGTTCGACATGCAGTATTT
ACACGTTCTTTCGCACACAAGTAAGTTCTTGATAATAAGCTGTTCTTTTG
ATCGTCTCTTGCCCAATCAATAGATTATACAAACTATATGATCAGCTCTG
TTGAAAGTACCATGGGGGACAGTCTTGAAGCAGTATACGAGCATCCAAAT
CACTTCTTGTGCATCGACAACTACTGGAGCAACCATGGACTTCCCCGCAA
GATAACATCAGGTCAGCTAAGTTGTGTGGGTTTTTTTTTCGTTTCAAGGC
ATCCTCATTTGTGGTGAAGCATGATGCTTCTTCAAGTAGCTAATGGTAGT
GCAATGGGGCTTCGCTACGGCCCGTGTATTTGGCAAAGCACACCGGGTCA
CCTAGTCTTCTTGATAAGTGTGTTGCGTTCTTTTACGTGCAGCGGTTTGA
CGCTTGAGGCTAATGCCTGAAGGTCCCTCATACACAGGGCCGCTGGCTTT
ATGTCACCATCCGAAATGACGAATGCAATCCCTTACAACATGTCCGAGCT
GGAGTCGACCCCTAGGATCGAACTCGGGTCTTAGGAGCCACGGAATTAAG
TAGTTCAACAAAATTACTTATTTTACCATCGGGAATTAACACTCTCAATT
TGATTTGCATGTTGCAATCTTTTGAATGTGCTAGGTATTGTGACTTTAAG
TTGGCGGTCCGGCATAAGAAGGATCTTTTGGCGTCAAATCTCTAAATATA
CATGTACAAGAACGTGAAAGAGTAGGGGGGTGATGACGTGGTGTGCTTGT
TTGAAACTATGTGCCATAGTGAGGCCACCGTTGCATGGATAGCCCTCATG
AGATTATACCCGAGGGTCCCTCAAGGGATGTAGTTTAATTTCATTTCTCA
GATATATAGATCTACATCTATATGATATTGGACAAATCCCCGCAAGGGGC
ATAACGTCCAGTGTGAAAGTAATATGGTATATTATAAGATGATCAATAAT
CATGTGAACCTTAATCAATCAAACTTTTCTTGCCACATACGTTTCCCAGG
TATCTACATAATCAGCATGGCACTGACCGTATGCGACGAAGTCAACGTCT
ACGGCTTTTGGCCCTTTCCACGTGACGATAAAGGCCACAAAGTGCACTAC
CACTACTACAAGGCGCCGG Coding sequence (CDS) from alignment at Sc0000026:1452028..1456296+ >transcript:BL77490_cuf2 ID=transcript:BL77490_cuf2|Name=transcript:BL77490_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=4356bp|location=Sequence derived from alignment at Sc0000026:1452028..1456296+ (Branchiostoma lanceolatum)
ATGTCCAGTTTTTTTTTTTCTCTCACTAGGCATGAGTTGACAGAGTGCTG
TGACGTTGAGTCGTCCGTTCTTACCAAACAAAACGTCAAAGTGGGTGACG
TGCTGCCAAACGTGCTCAACCGAAAAATGCCTCTAAAAATAAGCAGGGAT
GTCTACAGAGTCTTACCAAAGGAATCTCCTTTCAGAAATAAACATTTCCA
GACGTGTGCAGTAGTGGGAAACAGCGGTATACTGCGGGGGAGTCGGTGTG
GTGCATCCATCGACAGCGCTGAAGCCGTGTTCAGGTGTAACTTGCCGCCA
TTGGGTAAGCAGATTTACAGGAAGGATGCTGGGGTTAAGTCGACCTTCAC
CACGGCCCCTCTATCCATGCTAAAATCGTACATGCAAATGAAGGACAAGT
CTGTACGGGAGAAGTTTATAAAGGACGTGGAGCCATACCGAGGAATCCTG
TCATTAAAGAAACCCAACAATTATACAAACTATATGATCAGCTCTGTTGA
AAGTACCATGGGGGACAGTCTTGAAGCAGTATACGAGCATCCAAATCACT
TCTTGTGCATCGACAACTACTGGAGCAACCATGGACTTCCCCGCAAGATA
ACATCAGGTATCTACATAATCAGCATGGCACTGACCGTATGCGACGAAGT
CAACGTCTACGGCTTTTGGCCCTTTCCACGTGACGATAAAGGCCACAAAG
TGCACTACCACTACTACAAGGCGCCGATGTCCAGTTTTTTTTTTTCTCTC
ACTAGGCATGAGTTGACAGAGTGCTGTGACGTTGAGTCGTCCGTTCTTAC
CAAACAAAACGTCAAAGTGGGTGACGTGCTGCCAAACGTGCTCAACCGAA
AAATGCCTCTAAAAATAAGCAGGGATGTCTACAGAGTCTTACCAAAGGAA
TCTCCTTTCAGAAATAAACATTTCCAGACGTGTGCAGTAGTGGGAAACAG
CGGTATACTGCGGGGGAGTCGGTGTGGTGCATCCATCGACAGCGCTGAAG
CCGTGTTCAGGTGTAACTTGCCGCCATTGGGTAAGCAGATTTACAGGAAG
GATGCTGGGGTTAAGTCGACCTTCACCACGGCCCCTCTATCCATGCTAAA
ATCGTACATGCAAATGAAGGACAAGTCTGTACGGGAGAAGTTTATAAAGG
ACGTGGAGCCATACCGAGGAATCCTGTCATTAAAGAAACCCAACAATTAT
ACAAACTATATGATCAGCTCTGTTGAAAGTACCATGGGGGACAGTCTTGA
AGCAGTATACGAGCATCCAAATCACTTCTTGTGCATCGACAACTACTGGA
GCAACCATGGACTTCCCCGCAAGATAACATCAGGTATCTACATAATCAGC
ATGGCACTGACCGTATGCGACGAAGTCAACGTCTACGGCTTTTGGCCCTT
TCCACGTGACGATAAAGGCCACAAAGTGCACTACCACTACTACAAGGCGC
CGATGTCCAGTTTTTTTTTTTCTCTCACTAGGCATGAGTTGACAGAGTGC
TGTGACGTTGAGTCGTCCGTTCTTACCAAACAAAACGTCAAAGTGGGTGA
CGTGCTGCCAAACGTGCTCAACCGAAAAATGCCTCTAAAAATAAGCAGGG
ATGTCTACAGAGTCTTACCAAAGGAATCTCCTTTCAGAAATAAACATTTC
CAGACGTGTGCAGTAGTGGGAAACAGCGGTATACTGCGGGGGAGTCGGTG
TGGTGCATCCATCGACAGCGCTGAAGCCGTGTTCAGGTGTAACTTGCCGC
CATTGGGTAAGCAGATTTACAGGAAGGATGCTGGGGTTAAGTCGACCTTC
ACCACGGCCCCTCTATCCATGCTAAAATCGTACATGCAAATGAAGGACAA
GTCTGTACGGGAGAAGTTTATAAAGGACGTGGAGCCATACCGAGGAATCC
TGTCATTAAAGAAACCCAACAATTATACAAACTATATGATCAGCTCTGTT
GAAAGTACCATGGGGGACAGTCTTGAAGCAGTATACGAGCATCCAAATCA
CTTCTTGTGCATCGACAACTACTGGAGCAACCATGGACTTCCCCGCAAGA
TAACATCAGGTATCTACATAATCAGCATGGCACTGACCGTATGCGACGAA
GTCAACGTCTACGGCTTTTGGCCCTTTCCACGTGACGATAAAGGCCACAA
AGTGCACTACCACTACTACAAGGCGCCGATGTCCAGTTTTTTTTTTTCTC
TCACTAGGCATGAGTTGACAGAGTGCTGTGACGTTGAGTCGTCCGTTCTT
ACCAAACAAAACGTCAAAGTGGGTGACGTGCTGCCAAACGTGCTCAACCG
AAAAATGCCTCTAAAAATAAGCAGGGATGTCTACAGAGTCTTACCAAAGG
AATCTCCTTTCAGAAATAAACATTTCCAGACGTGTGCAGTAGTGGGAAAC
AGCGGTATACTGCGGGGGAGTCGGTGTGGTGCATCCATCGACAGCGCTGA
AGCCGTGTTCAGGTGTAACTTGCCGCCATTGGGTAAGCAGATTTACAGGA
AGGATGCTGGGGTTAAGTCGACCTTCACCACGGCCCCTCTATCCATGCTA
AAATCGTACATGCAAATGAAGGACAAGTCTGTACGGGAGAAGTTTATAAA
GGACGTGGAGCCATACCGAGGAATCCTGTCATTAAAGAAACCCAACAATT
ATACAAACTATATGATCAGCTCTGTTGAAAGTACCATGGGGGACAGTCTT
GAAGCAGTATACGAGCATCCAAATCACTTCTTGTGCATCGACAACTACTG
GAGCAACCATGGACTTCCCCGCAAGATAACATCAGGTATCTACATAATCA
GCATGGCACTGACCGTATGCGACGAAGTCAACGTCTACGGCTTTTGGCCC
TTTCCACGTGACGATAAAGGCCACAAAGTGCACTACCACTACTACAAGGC
GCCGATGTCCAGTTTTTTTTTTTCTCTCACTAGGCATGAGTTGACAGAGT
GCTGTGACGTTGAGTCGTCCGTTCTTACCAAACAAAACGTCAAAGTGGGT
GACGTGCTGCCAAACGTGCTCAACCGAAAAATGCCTCTAAAAATAAGCAG
GGATGTCTACAGAGTCTTACCAAAGGAATCTCCTTTCAGAAATAAACATT
TCCAGACGTGTGCAGTAGTGGGAAACAGCGGTATACTGCGGGGGAGTCGG
TGTGGTGCATCCATCGACAGCGCTGAAGCCGTGTTCAGGTGTAACTTGCC
GCCATTGGGTAAGCAGATTTACAGGAAGGATGCTGGGGTTAAGTCGACCT
TCACCACGGCCCCTCTATCCATGCTAAAATCGTACATGCAAATGAAGGAC
AAGTCTGTACGGGAGAAGTTTATAAAGGACGTGGAGCCATACCGAGGAAT
CCTGTCATTAAAGAAACCCAACAATTATACAAACTATATGATCAGCTCTG
TTGAAAGTACCATGGGGGACAGTCTTGAAGCAGTATACGAGCATCCAAAT
CACTTCTTGTGCATCGACAACTACTGGAGCAACCATGGACTTCCCCGCAA
GATAACATCAGGTATCTACATAATCAGCATGGCACTGACCGTATGCGACG
AAGTCAACGTCTACGGCTTTTGGCCCTTTCCACGTGACGATAAAGGCCAC
AAAGTGCACTACCACTACTACAAGGCGCCGATGTCCAGTTTTTTTTTTTC
TCTCACTAGGCATGAGTTGACAGAGTGCTGTGACGTTGAGTCGTCCGTTC
TTACCAAACAAAACGTCAAAGTGGGTGACGTGCTGCCAAACGTGCTCAAC
CGAAAAATGCCTCTAAAAATAAGCAGGGATGTCTACAGAGTCTTACCAAA
GGAATCTCCTTTCAGAAATAAACATTTCCAGACGTGTGCAGTAGTGGGAA
ACAGCGGTATACTGCGGGGGAGTCGGTGTGGTGCATCCATCGACAGCGCT
GAAGCCGTGTTCAGGTGTAACTTGCCGCCATTGGGTAAGCAGATTTACAG
GAAGGATGCTGGGGTTAAGTCGACCTTCACCACGGCCCCTCTATCCATGC
TAAAATCGTACATGCAAATGAAGGACAAGTCTGTACGGGAGAAGTTTATA
AAGGACGTGGAGCCATACCGAGGAATCCTGTCATTAAAGAAACCCAACAA
TTATACAAACTATATGATCAGCTCTGTTGAAAGTACCATGGGGGACAGTC
TTGAAGCAGTATACGAGCATCCAAATCACTTCTTGTGCATCGACAACTAC
TGGAGCAACCATGGACTTCCCCGCAAGATAACATCAGGTATCTACATAAT
CAGCATGGCACTGACCGTATGCGACGAAGTCAACGTCTACGGCTTTTGGC
CCTTTCCACGTGACGATAAAGGCCACAAAGTGCACTACCACTACTACAAG
GCGCCG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000026 | genome | Sc0000026:1452028..1456296 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL77490_cuf2 |
| Biotype | protein_coding |
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