transcript:BL77421_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL77421_cuf0
Unique Nametranscript:BL77421_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL77421_cuf0

>transcript:BL77421_cuf0-protein ID=transcript:BL77421_cuf0-protein|Name=transcript:BL77421_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=100bp
MVTCPFFMLAHMYQSSYFRRKSCVSGENDVFRPLPATCTRHRECCTADHP
AVFLPRNAVSIATQPDSLYNVDASLPIHVTSLELLNMTTGTTFCRDFTEL
Run BLAST on NCBI

mRNA from alignment at xfSc0005827:3..610-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL77421_cuf0 ID=transcript:BL77421_cuf0|Name=transcript:BL77421_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=608bp|location=Sequence derived from alignment at xfSc0005827:3..610- (Branchiostoma lanceolatum)
GGATGACTGACACCTGTCACTGACCTGTAAACCTGGCCAATAGGCCTCCA
GCGACTGGAAGACAGGCATGGTGACCTGTCCTTTCTTCATGTTGGCCCAC
ATGTACCAGTCATCATACTTCAGGTACGTGTTGATAGTTTTGTTGTATTC
TGGGGAGAACAGAATTTCTATTATCAGTGCAACTTTCTTTAGAACAAATT
AACACAAAATAATTCATAAAACATTGTCCCTTCTGGGCCTAGGAGAAAAT
CATGTGTTTCTGGTGAAAATGATGTGTTCCGCCCACTGCCGGCCACGTGT
ACAAGACACCGCGAATGCTGTACTGCAGACCACCCTGCCGTCTTCCTGCC
CCGGAATGCCGTCTCAATCGCGACCCAGCCTGACTCCCTCTACAACGTGG
ACGCATCGCTGCCCATCCATGTCACCAGCCTTGAACTTTTGAATATGACC
ACCGGCACGACCTTCTGCCGTGACTTCACGGAACTCTGAAAGTACTTCTC
CGTGCACCCAGCCTGACCTGACTGAACTTTGTGCAACATCTCAAACTTTT
GTGGTATAGTTCTAGCAATGTACTGTAGCACGATGTCCTGTATGTTCGTA
AGCCTACG

Coding sequence (CDS) from alignment at xfSc0005827:3..610-

>transcript:BL77421_cuf0 ID=transcript:BL77421_cuf0|Name=transcript:BL77421_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=606bp|location=Sequence derived from alignment at xfSc0005827:3..610- (Branchiostoma lanceolatum)
ATGGTGACCTGTCCTTTCTTCATGTTGGCCCACATGTACCAGTCATCATA
CTTCAGGAGAAAATCATGTGTTTCTGGTGAAAATGATGTGTTCCGCCCAC
TGCCGGCCACGTGTACAAGACACCGCGAATGCTGTACTGCAGACCACCCT
GCCGTCTTCCTGCCCCGGAATGCCGTCTCAATCGCGACCCAGCCTGACTC
CCTCTACAACGTGGACGCATCGCTGCCCATCCATGTCACCAGCCTTGAAC
TTTTGAATATGACCACCGGCACGACCTTCTGCCGTGACTTCACGGAACTC
TGAATGGTGACCTGTCCTTTCTTCATGTTGGCCCACATGTACCAGTCATC
ATACTTCAGGAGAAAATCATGTGTTTCTGGTGAAAATGATGTGTTCCGCC
CACTGCCGGCCACGTGTACAAGACACCGCGAATGCTGTACTGCAGACCAC
CCTGCCGTCTTCCTGCCCCGGAATGCCGTCTCAATCGCGACCCAGCCTGA
CTCCCTCTACAACGTGGACGCATCGCTGCCCATCCATGTCACCAGCCTTG
AACTTTTGAATATGACCACCGGCACGACCTTCTGCCGTGACTTCACGGAA
CTCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL77421gene:BL77421Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL77421_cuf0-E1BL77421_cuf0-E1-1564476830-535832Branchiostoma lanceolatumexon
BL77421_cuf0-E2BL77421_cuf0-E2-1564476830-535829Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL77421_cuf0transcript:BL77421_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0005827genomexfSc0005827:3..610 -
Properties
Property NameValue
Transcript idBL77421_cuf0
Biotypeprotein_coding