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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL77416_cuf0 >transcript:BL77416_cuf0-protein ID=transcript:BL77416_cuf0-protein|Name=transcript:BL77416_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=114bp
MESRHLPPNNCKQGTPHIDSIAAKGAKLTQHLAAAAVCTPSRSAFLTGRL
PVRFDKNSCLSSSFRQESQVLYGVVHHPRRQGALVLYDVVVLKLKHRTTN
VSAPQNLESGCAGT Run BLAST on NCBI mRNA from alignment at Sc0000025:1294819..1304719- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL77416_cuf0 ID=transcript:BL77416_cuf0|Name=transcript:BL77416_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=9901bp|location=Sequence derived from alignment at Sc0000025:1294819..1304719- (Branchiostoma lanceolatum)
GTCGGCCGTATGCCTCGAAACTGTTGCACAACTCGGTCACGCTCCCAGTG
TTTGCCGTGCACACATCGCTCACGCAGTCCAGGTAGTACCCGTTGAAGGG
GACGGTGGCGTGACAAGGGTTAAACGCCTGGTTGCCGAGAAGCGAGCAGC
GGAAGGCTTGCTGACTGACTGCGAAGTTGATGAACGAACAGACGGATGGA
GTCGCGTCACCTCCCACCGAACAACTGTAAACAAGGGCAGGTTGTAAAAA
TGCACTTTGGCGACGTGTGGTTGCTGTTGAGGGCCATGCAAAGGTATAAA
GCTACACGTATAAACCTAAAAGAATTGATTTCGGTCTATCATATTTCCAT
TGTTATTTTAATGATTGCACTATACATGGACGTGTACACCATTGAACAAC
TGTAAATAAGAGTAAATGTTAAAAACACATTGGCGACGTGTGGTTGGCGT
TGAGGGCTGTGCAAGGATATAACGCTACATATCTGAACCGAACAAAATCC
ATTTCTGTCTACTAGTATCATGATATTCCATTGTTGCTTTATTGAATGCT
CATATTACCATATACCATATATTCATACATGTTTATCATTTCGAAGCTTT
AGAAATACTTTATAACCCTTCACAATGGTATATACTATGATCAATGACTG
ATCAATGTCTGCCAGTGGGTCGAGAGAAAAATTAAGCCGAAATTAACTTC
GATTATAATTCCGTTGTTGTTTTTATGATGAGCAGTGTCTTTCATAACTT
TGGAAAGCTTTTCTATTGTCCTTTTGAATCATTCCCCATTTATGATAATT
GCACACACACACACACGCACACACACACTATCGCAAACGCATTGCCACTG
TTCTTCCCGTACAACTACTACGGGCAAATACAGTGAAAATTCCACAGTGC
AATACTAGATTTAAATTCCTTCCAGACATATTTTGAGACAGTACCTGTCA
TTGGTAGCAACTTTCCAGCTCGTCAACAAGGCAGTGGTGGTAGCGGCCTG
GGTACCAGATGACGTCATAGCATCGTCATTCGAATCGTCATTGAAGTTTC
CACAGAGTCCCTCAACCTTGGACTTGAAGCACGTCGTGAGGCGGACCCAA
ACTTCGTCATTGCCGTCGTACCCAACTTGTAGCCCGAATACTGTACGCAC
GACCATGGATGATCCGAGATATTCAACCAGGACTTGCTTGGAGGGACCGA
GTTGGGTTGGTAGAGTGACGGGATTGTCATCAACCTAGCAAGAGACGGTT
TCCGTTGAATTAGGTGGGGATGCCGCAAGGGTTGGTAATTGACCCACTTT
TGGCTTTATGTTAGATGGCAGTAAAATGTGTTATTCCTGTAATCATTTTA
ACTCCTTTATGCTTTAATGTGCCATTTTAGGAGCATGGAAGTATCATTCC
AATTGATCGTTAAGATGGATAAGCACTAACCTCATCGCTTCTCTGAACAG
CGGATTTTCTGTATATAAAGACAACTCAAACTCTACAAGAGAGTATTGTA
GAGTTTGAATATTGAATCGTCTTTATATATTGTTAACCTGGATGTCTAAC
CTTCATAAACGTAGCATTTTCTGTAGTCTAATCAAACTGTACGTAAAGAG
GCCCACCAACTAATACCCCCGCCCCGCCCCTAAAAAAAAGTGTATCAGGA
TATCAGGATTTTGTGTTACGCGGATATATGTATGTTAACTTACTGTCACA
GATGATCCATTGAGCAGTGATATGCGGTGTCCATACACATCTACATGAAC
TGTTCGTGCATATGACGTCTTGGTACTACCGGCTTCGTACTCCGTGTCCA
CTTCCACACTAAAGAGCGGGGTCCCTGCGGTCGTCTTGTCTCTGACGAAG
ATGTAGGTACAAGTCCCCAGGAAGTCCGAGTTTTTGCCGTCGAAGGTTCT
GTAGTGAGGGTCACCGTAGAGAGAACACTGTCCCCAACCCGCACTGACGG
AATTACCTGTCAAAACAACAACAACGGAATCGGTGAAATACGGATATCCA
TTCATAGCTTCTTGACAAAGTGTTATCCTGTATATAGTGTCACACAAACG
TCCTTGAAAACGTATGTGAGAAGAAACAAAAGAAAAAGTTTGGTGCGGTT
CTACAAGGTAGAATGATCGGCCCACTTCACATTTACCATGATGTAAGTGT
TTATCCGATTCGGCATCGTGCCTCAAGTAGAAAAAAGTCTGTTGCATCAA
ATTAATTTTAGATCTATAACTTGCGGCATTCCTTAAACGCAACATCAGTG
ATTATAAGATGACACGCGTCATATATATTTCATTTCATATATGTCATTTC
AGGGTAATACAGATCGTGGATGGACTTACAGATTTCGCAGTATTGGCCAG
TGAATCCAGAAGGACACCTGCAGAAGAAATCCTGCCCTTGACTCTCACAC
GTCCCACCGTTGTGGCACGGTTTTTCCAGACAAGACTTGTCCCCTGATAA
CACATAGGGAGGAGGTTAGTGTATGGATCGTAATGACCGACAAGTGGGTG
TCTACTTTTTAGCTCCAGAGGCTATCACGGTGCGGCAACTTTTGACGAGC
CTTGAATTTATGAATTTGCATTGGATTTTTTGAATTTGCATTACATTTTT
TGAATTTGCATTGAATTTTTTAAAAAAATTAAAAGGTATCAAATGCAGGT
CGGTTTTGAATATAGATTGAAGTTGACGGGTTTAATCACTTGCCAATTTA
ACGTTGGCAAAGGTAATGGTTATGTGATGTAATCCACTTACCGCAAAGGT
CCTCTTGTACTGACGATGTCAGGTTGGTTATGTTGGCGAAGCTGCCGACT
TGGTAGACGTACTCGGAGTCTCCAGCGATGGCCATCAGGGTAGCGTACTC
GGCCCTCCCCACGCCGACAGCGTACAACTGAACACGTTTGTTCCTCAGGG
TCGTCGCCGGCGTCACCACGGAGTCATACGACTTCCCATCCGTCACCAAG
ACCACGATGTTCGCCCTGTCGGGACGATCCCCTGCGGCTGCCGTGAAGAT
ATTATCTGGCAGATATCGCAAGGCGGCGCCCGTGTACGTACCACCTCTCA
TGTACCTGATTCCGTCAATGGCGCTCATGACTTCAGCCGACGTGTTGTAT
CGGTTCAGCTTGAATTCTTCACGGATTTTGGAGCTGTACTGGACTGCCCC
CACCCGGGTGCCGTTCTGGCTGTTTATGTTGAACTCCTGTATGAGATCTT
TGGCGAAGTCCTTGATTCGCTGGAAGTTGGTCTCTGTGACGCTTCCGGAA
CCGTCCAGTAAGAAGACCAGATCCACGTTTGTATCCCGACATGCTGTGAA
AAGGTAAGAAGTAAAAAGTATCCATCAACACTGCACTCGAACACCAACAT
TCCTTGAAAGTTGAAAGTTTTGGTTACACATCGTCTTAGAAATTTGGATT
TTACTAAAGTTATCTTTTTGTTTGTTTGTTTATTTGTCAGATAACATAAT
TAAGCTCTTACTTGAATTGTTGGTAGTGTTTCCGCCGTGACCTGCTCCAA
ACGTTCCACCTGTCCACACGAGACAGAGCACCAAGGCCACCAGCGCCCTC
AGGCGCCTGAGAACGGAACGGCAAATCAAACGTTGCGTCACATATGCAGG
CATTGAAACTCACCGCCTCTAATTTGAAAGACTTTGTCGCTGAAATATCA
TCGTTTCAAGTCTATTTTTATCTACAATTTTTACAGGGGCGTCAGAATCT
TGGACGACTTTTGAGGTGATTATGAATAAAATATACTGCATACCAAGTGC
ACAAGGTATAGCGTATTACGTCGTCTCCTACATAACAACAACCATTCTAT
GAGACTTATTTACCTTACGAAAAATATAAGCCACTTTCCACAGTATATAT
GGAGGTCTAGAATGCTATGTGGATGGTAGTAGCAACATGCATGGATACGT
TTAATTTGTTTAACTCTCATGGGTATCTGATTACAAAGTTTGTTTATTGA
TAGTAATGAGTACATTATTCTTCATTGATTCCCCGTCCTGTCAAATACAT
AGACACAAAAATATCCTCGCGGGTGAGAACGAGTAGTCTTCACACTTTGA
AAATACCCCCCTCCCCCTCAGGACAAACTTCTGTGACTTAATGGCATGAT
TTATTCTCAGTGGAGTATCTGGGTGTTTCGCAACTTTTGCCCAATTGCTT
GGATTTTTAACTGCTCGATCAATGTAAGTAAGTCAGTCAGCCAAATGCTA
ACAATTTTTGTGCAACTCTCTGGTACATGTAGCTTGTTTTCTGGGGGCGT
TTTGTTCAAAAATGCCCAAGGGGTCTGTCACCACTGAAGAAGTAGTCTTG
GATAATCATGATTAATCTGTTTCCTTCCTTTCTCGATACCAAATTTAGAT
TTGATACTTCATGGTGGGGAGGGGTACAAAGTTGGACAAAGACGGTTACA
CGGATTCGAACTTACACCCTTATGTTCTGAAACCTCTATGTTCTGAAACC
CCTATGTTCTGACATCCCCATTTTGCGCCCCCCCCCCGCCCTGTGTGTTG
CGACATCCCTATGTTGTGACATCCCTGTGTTCCGACACCCCTATGTCCCA
ACACATCTTAATTATGTCCGTAATATAGGGTGTCGTAACGTAGGGGTGTC
CGAACATAGGGCCCAGTGTCATAACGAAGGAGTGTCGAAACATATGGGCG
TCGAATTTCGAAACATCGGCGCGTGTCTTAACATAGGCGCGTCCGAACAT
AGGGCCCATGCCAGTGCCACAACGTAGGATTGTCGTAACATAAGGGCGTC
GAAAAGTAGGCGCGTGTCGGAGCACAGGGGATGTCGGAACATAGGGCCCA
GTGTCACAACGTAGGGGTGTCGTAACATATGGGCGTCGAAACGTCGGCGC
GTGTCGTAACATATGTATGGGCGAAGAAACGTAGGCACGTGTTGGAACAT
GGACGAAGAAACGTAGGAGCGTATCGAAATATATAGGGGCGTCGAAACAT
GTTGCTATCCCCTGGACAATAACACACGACCCTGGCATGCTTTTGCAGCT
GAGTCAGGTTTTGGTCAGTACCGTGTGGCTATGATGACAGGTGTAGTGGA
ACAAATGAAATACCCCGATCCACGAGCTCTAGTCACTGCAAATGTGACCT
CTTGGACAGCAACACTCAACCTATTGTACTGTACTGTACTGTTTGGTAAT
TTTCTCTACAGCCGGAGGGGGATTCCAAAAGCCAATACATTTGAATGGAC
AGAAAGACAGGTATCTAGGATCTAGGACGACTATCATTGAGGTCTAAAGA
AAGTGATGAAGATAAACAATGGACAGGCAAGAAACTATAGGTTCATCTAG
GGCGTACCCTACCCCTAGTCCTTTCGAAAAAGTGTGGTGGTTTCTTTTGT
GTATGCCTAGGCGTAGGCAAAGTCGATGTAGATTTAAGGGAAGAAGGTAT
ACAGTATAGTATCACTTGTGTTCGGCGATTCGATTTTGGTTGAACATGTA
AGTTTTCAACAACTAAATGTTCAACCTAGAGACAGTTTACCTTCACGAGT
TCCTCCTACAGTGTTTAGAGAGGAAATGCTATGCCTGATATCCGCTGAAT
TTTGACAACGTTTCCCACCTAGTCAACATTTTACATCCCACGTTTTAATC
ATCAAGGACGAAACCTCTCAACAATATGACAGCACAATATTAAAAAGAAG
ATAATTTTGGAATTCCTTCGCCATGTTTTAGTACATTCATCATGAGTTGA
TACAGAGAACGGGTCGATGATGATGTGTTAGACAATCTACATATCGTAAT
GTGTTTCACACATTTGAATGTCTAAATGACAGTCAATAAATACTATGCAA
TTATTAGACAACAATATCGGGCCTGCAATCAAAGATTCTGCTAAAAGTAC
CCCAAAAATTCACACTTGTAAGTTATAAATCAATGATGATATGTGGACGC
AAAATTTGGTGAAAATGTTCCCCTTTTAAATCAGTCGTTGGTTCGCTGTT
TTCGTTTCGTTTATGGTTGACCTTTTGTCTTCACTCACTCTGCTTGTTAC
CAATTTGTGCTAATATTTTGTCATGGTCGTCTCAATATATTTTTTCTTGT
TCTGTAATTCTGCCTTCAAACAAGAAACGTCATAAAAGATTATGTTTTCA
CAGCCGTTACCGTTGAAATTTAAAGAAGGAATCAAATGTATAGTAAGCTG
CCGAATTAGAACACTTCACACCGCGATCAAACGTAGAAAAAGAAAAGGTA
TAGTAAGACTGTTGAATTTCCTATAGTCTCTAAATAGCGAATGAATTGAA
GACGATATCGATACACAAAAAAATATAAAGTCAGCAATTGTGGGAGGGGG
GGTGGTAGCACATGTCCTCCTGACCTAAATTCTTAAGTAATGTAAGCTAG
GGACCGTCCATCTCAACATATCTCGCGATCGCGTTTTTTTCCTCAAAATC
CTATACATACCAAAATATTTAGTCATAATTCATACGTTTTATCATTATTA
CAACTCGTGATATTAGTAATGGTTTGTATTTGTTTAAAGAACCATTTGCA
TGACTAGAAATATACACACGTGCGAACGCCAGGTAAAGTATCTACTGATC
AGCATAAAAAGTGTAGCACATCAATTTTCAACGAACGATGCTTTACAGCG
CTGTAAATTCACCGTAGGTCGTCGTACGATTTCAATGTCCTAGATTTTCA
AGCAGGCTGTGATAGAACAACAGCCGACTAGGATTTGATTATAAGACGGC
GTTTTTTACCGTGAGAAGACAGCTTGAAATTTGTAGGACACAAGCACGAC
TATCATAAGAATGACACCGCAGTTTGTGATTGTACGAGGATCGTACGACG
AACGTGACCAGGCCCTTAAGCCTTATGAAGCAAAATGTTCAGATGAACAC
CTGTCCACTTTTATTAAAGCAACTACCTGCAACAGGTGTGTCAAATCAAG
ATTACGAAATTCTCCATTACGTCACTTAAGAACTTATCGACCCAATACTT
GAGCTTATGCTTAATAGCTACTATTTTCTTAAGACATCGTCTAGTACATG
ATAATTAGGTCTAAGCTACCAAAACATCTCTAACAGTTTCTAATCTCTAA
GAGTTTATCTGAAGAAAATTTGTTGTACTTACGGAGAAGCCATTGAGGTG
TGGTGAATCGACCTCACTGTTAGAGTTCTCTCTCGAAACTTTGTAGACTC
TTTTCACAACTATTCAAGTCAGACACCACACTTTAAACGCGCTGGCGTTG
GACTATATCCTACCAAGGCCTATTGTACTACACCTGTAGTACAAAAAACC
TGATTAGGATGGGAAAGCAGGTGGTTTAGGGTGGGGAAAATAGTCCCCTG
CGAGCCACCGATTGAAGATGGCGGCCTCGACTACGCCTGACCCTTAGGGT
AATGGCCTACTTCTCTTTACAGTTAAATGAACTGATTGAAAAACAATTAC
AAAATGCTGTTATTTACTAGAAGCTCAATCTAGTGACAATCAACGAAACG
ACAGATTCATTTTCTTGCTTACGTTTAAAAGTGGCGATTTACCAAAGTAT
GTATGTTTTGGGTTACGTACTATCTTTTTGATGTCTTAACGATCATGTGC
AATGAAGCAAGTCCCGTTTAATCTGAGTCCCGAGAACTCATTTTAGTGAC
AACTTACGATTAAGGAATGTGCTGACTCATCGCCAAGTCGCAAGGTGGCG
TTATTACCGTACCAAATTGAAGTAGAAAAAGAAGTTTATATTAGTGTGTA
TATGGCTTTTGTTAGGGCTTAGAAAGTGTGCAAAAGTCATAGCATGACAA
CTATGGTGTCGAATGTCTATCGAGACTGTCACTGTTTTGACAAGGGTATA
CTATGTGTCTGTGTAAACATTGAGTGCATTTTTGCTGTTTGGCCCAATAA
GACATCAGCCAAAGATTAAAACTATGACAATGTGTATTTTCCAGATTCTA
AGCGCACTTGCAACAACAATTTATTGTTCATCAGTTATATTTTTCTCCAT
ATATGTAGTGCTAGTTGTGATCTCTCTCATGGGTCGTAAGTCACAAGGTA
TTCACCATTGTTTGTTTGTCAATAGAATCCACAATAATTGGTTTAGATAT
GACAAGAATTCGACAAATTCTACCATGTTACATTTGTAGTGAAAGTTTGT
ATGGTTCTTAATTAAGTACAGATTTATTTGATGTTAAGATTAGGCCTTCA
CCACGACTGACCGACTCAGAAGACCTCAATAATGAAAGCTTACTGCGCAT
AGGACCCAAACCGGTAGCCCCGGTTCTGCATCTGTATAGGCGGTATAACC
GCCCTTCGGCGTAACATACCAACAGCTGGTTACGTTACACCGAACGACCT
GTCACACCTAACTTTTACACATCTAGATGCAAACGTTCTTAAAAGCTATC
CAGCGAAGATGCTCTGCTCTTGCTAAGTTAAGACAACAGTTAAGACAACA
TTCGAGGGCACATCGCACGAAATGCAAAAAAAAATAGCCCATATGATGTG
TCAGTCTAATCAAGTAGTCTGCTATCTGCGGATAAAAACGTAGAAAATAC
TTTGGAAGGACACACTGTAACATAAACTTCTAAACACAGATTTTTGTCAT
TGACCGTTCGTACAAATCGACCTCTCGTTACCATGTGGCGACCGAATCAT
TTCAGACTATTTCAGACTATCCCTGACCCCTGAGTTCACCTTTGACACGA
TGGCACACCTGATTAACATATCTTCCGGTGAACCTTAAGTTGTCAGAAGA
TCTGTCACAGATTTGAATCGAGAATCAGTTTTACAATTTCTGATATGATT
AATGATACCAGTGTTGCATCGTACACTGAAAGATAACTAGTTTTGTGATA
AACACGAAAACTAGAAACAGAAGTTCAGCGCAGTCGAAGTAATTTTCAAC
ACTTGTCCTGCTGGCTGTTTTTTACCATGCATACTCCTAGCCGCGGCGAC
TGTTGGAGGGCTTCTCTTACTTGCAGTCTTATACATTAGCCCTAACGTAT
AAGAGTGCAAGTAAGCAGCCCTCCGACTGTCGCCGCGGCTAGCATACTCC
CGGCCATGTGCTGGGCGTTTCAATCTGAGGCACTCAGACTAGCTCAGCCG
AAGGGCTATCATTTCACTAGGCACGTCAAGTTAGGAAATTTCATAATTTC
GATGTATTTCAGGACCCCGCATATCGACAGTATCGCTGCTAAAGGTGCCA
AGTTGACCCAACACCTGGCCGCCGCCGCCGTCTGCACACCCAGTAGATCA
GCCTTCCTGACTGGACGCCTTCCCGTCAGATTTGATAAGAACTCTTGTCT
TTCCTCTTCTTTCCGCCAGGAGTCGCAGGTTTTGTATGGAGTAGTGCACC
ATCCTCGCCGGCAGGGGGCGCTGGTTCTGTATGACGTAGTAGTACTAAAA
TTAAAACATCGTACGACAAACGTGTCTGCGCCTCAGAATTTAGAATCAGG
ATGTGCGGGTACTTAAGATAAGGAGAATGGCGATTTTTGACTTTATCTTC
TTATGAATAAACAAAGGTTCAAAGAAATATCATTTTCTAAAGAGCGTTAA
GATGCAAAAGACAATATGGCTGAAACATTCTCCGTCACAACAGTTGAATT
CTGTTCGACTCTTCCACGACTGTGCCCAGTTTGCCGACTCGTAAACCTGT
CGTGCGGCGTTTCTGAAACAGGCTTAACTGACACCAGCAGAAAAATTGCT
TGCGTCATGCGTTTCACTCCAGGTAACACCTGAAGCCGTACCCACTGCAA
GCAGGTATTCCGATCCTGTTTGTGACAACTCCAACCCACCTCTAACCCCA
CACAAGGACGAGATACCCGCCTTTCTCACCGATCGTCCACCGGAAAGAAC
TACAAACAAACCAGCTCTTGAAAAGTCTGTGAACGACGCTTCTTCCTTTG
TTAGCATAAACCGCCTTAAGGCGTAACGCTGACCACTCTATAGTTAAGTA
C Coding sequence (CDS) from alignment at Sc0000025:1294819..1304719- >transcript:BL77416_cuf0 ID=transcript:BL77416_cuf0|Name=transcript:BL77416_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=690bp|location=Sequence derived from alignment at Sc0000025:1294819..1304719- (Branchiostoma lanceolatum)
ATGGAGTCGCGTCACCTCCCACCGAACAACTGTAAACAAGGGACCCCGCA
TATCGACAGTATCGCTGCTAAAGGTGCCAAGTTGACCCAACACCTGGCCG
CCGCCGCCGTCTGCACACCCAGTAGATCAGCCTTCCTGACTGGACGCCTT
CCCGTCAGATTTGATAAGAACTCTTGTCTTTCCTCTTCTTTCCGCCAGGA
GTCGCAGGTTTTGTATGGAGTAGTGCACCATCCTCGCCGGCAGGGGGCGC
TGGTTCTGTATGACGTAGTAGTACTAAAATTAAAACATCGTACGACAAAC
GTGTCTGCGCCTCAGAATTTAGAATCAGGATGTGCGGGTACTTAAATGGA
GTCGCGTCACCTCCCACCGAACAACTGTAAACAAGGGACCCCGCATATCG
ACAGTATCGCTGCTAAAGGTGCCAAGTTGACCCAACACCTGGCCGCCGCC
GCCGTCTGCACACCCAGTAGATCAGCCTTCCTGACTGGACGCCTTCCCGT
CAGATTTGATAAGAACTCTTGTCTTTCCTCTTCTTTCCGCCAGGAGTCGC
AGGTTTTGTATGGAGTAGTGCACCATCCTCGCCGGCAGGGGGCGCTGGTT
CTGTATGACGTAGTAGTACTAAAATTAAAACATCGTACGACAAACGTGTC
TGCGCCTCAGAATTTAGAATCAGGATGTGCGGGTACTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000025 | genome | Sc0000025:1294819..1304719 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL77416_cuf0 |
| Biotype | protein_coding |
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