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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL77396_cuf0 >transcript:BL77396_cuf0-protein ID=transcript:BL77396_cuf0-protein|Name=transcript:BL77396_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=233bp
PSNTARADCSSPYTHGETCSYRCHTGYTQVSGSTVKTCSNGQWTGIELVC
KKVIQVPDDQMGGLVTKYAPKVWLANGEGYKPSSVGFHLQNVKVHDGGRV
YSSTPSTLPTCPDNCYLSSNQGLSKPSSTLPFFGGEPVGPTQQPPVYAVW
KRINGVTTDIFYWMFYPYNRGKKVCIGFRAFGKCIGGYSNFGHHVGDWEH
MTARLVGDQPSSIYVSAHNFGGIYDWDAASQTY Run BLAST on NCBI mRNA from alignment at Sc0000029:1013070..1018102+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL77396_cuf0 ID=transcript:BL77396_cuf0|Name=transcript:BL77396_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5033bp|location=Sequence derived from alignment at Sc0000029:1013070..1018102+ (Branchiostoma lanceolatum)
CCCATCGAACACAGCTCGGGCCGACTGTTCCTCCCCCTACACACACGGAG
AGACATGTTCATACCGGTGCCATACCGGGTACACCCAAGTCTCCGGCAGC
ACAGTAAAGACCTGCTCTAATGGACAATGGACTGGGATTGAGCTGGTCTG
TAAAAAAGGTAGGTAAGGCCATAACCGGATCTTTTGTAGGGAGAAGTGAT
GAATTTGAAAGGACCAGTTAGCAATATAAAAAGAACGTTTGTAAACAGAA
ATTTGCTTAAGTTTGTCTTTGTCTAATCTTATGTAGTTTGCTGTGGAGCT
TTAATATAAGTTGTTGTACTTTAGTGCAGCTCCACTATATCCATGCCTTT
GTGTATCGTGCTTCTGATAAAGGTTGTAGGCTTTCAGAAATCCAATGGGT
ATCCCAATGAAAGAAATAATTTGTCTTCATGCAGTGATTCAAGTCCCAGA
TGACCAGATGGGAGGACTAGTGACCAAGTACGCACCAAAGGTTTGGCTGG
CGAATGGTGAGGGGTACAAACCTTCCAGCGTCGGGTTTCACCTTCAGAAC
GTCAAGGTGCACGATGGCGGCAGAGTCTATTCCAGCACACCGTCGACTCT
TCCCACCTGTCCCGACAACTGTTACCTGAGCTCCAACCAAGGCCTGTCAA
AACCCTCAAGCACACTGCCTTTCTTCGGTGGAGAGCCAGTCGGTCCTACT
CAGCAACCTCCTGTGTATGCTGTTTGGAAGCGAATCAATGGTGTGACTAC
AGACATCTTCTACTGGATGTTCTACCCCTACAACAGGGGGAAGAAAGTTT
GTATCGGTAGGTCAACCTTCATCACTAAGATGCTCTGAAACTATCAATAT
CTTCGAGTGTTATAGAGTGCATTGCCTGGTCTGGCCAGTTTTACACTAGT
CAGACTCTTTTCAACCAGCCTCATTATTTCGTACGCCCGAGTGGCTCGCT
TTACAAAAAAACAAACATTTTTTGATAAACCGCTGTCGCAAGTGCGTACA
CTTGAAAGCCTTTTTTGTGTTCGTATTGAAGTATCAAAGAATGATGCGAA
AGTTCACGTTTTTGCAAGTTACAGTTCATTACTGATGAACCAAGATGGCA
AGAAACATGCACAACACAATCCTTATAAATTGAGATAGCTTTTGCTTGAT
GTTATATCTTCTGATCGTTAAACAGGATTCAGGGCTTTTGGAAAATGCAT
CGGTGGCTACTCTAATTTTGGACATCACGTGGGTGACTGGGAACACATGA
CCGCTCGTCTGGTGGGCGACCAACCAAGTAGCATCTATGTCTCAGCTCAC
AACTTTGGAGGTACCGTCTTTTTACTGACCCGTCAACATTGTCTCAAGTA
TTTTGTACATAGAAATTTCAAGCGTTTATTTTGGTTGTACACAACATACT
TGGGCAGTCTTGACTAAACAATTACAATTGCTGAAGTAATAGAAAACAAT
AAAAGAGATTGGCACAGAACATGGAAGAATTTCAAATCGGCATGTATTTA
GCTAGCAGCGTTTGCTCTTACGTAACATAGTGTGATGTCACAACTGCCTC
TCGGCTTCTTCAGCTGCTTCCTCCCTTCACTGGTGGTTTCGCCCCCTTCA
GCAGTACCTCCTCCGGGAGGCGGGGCAGCAGTACTGGCCAGGTACTGCTA
GCCGAGATTCTTCCACTGTTTGTCTCCACTCCTAAACCACAGCCAGCGGG
ACGCCTTCTCCGCCTCTTCTGCTAGCTTTTTTGTTACTTCCCTCCTTCTC
TTGCCCTTCACTCCTGTGACACCTAGTGCCCTCCACATGGATTGGCAGAT
GAACCCTCTCGTACCTATCTCCACTGGGTAGCAACTTGCTTTCCACCCTC
TTTCTTTGCACATGTTTAGCAACTCCTGGTATTTCAATGCTTTTCTCTCG
TATGCCTCCTCTGCTCTCTCTTCCCAGGGGACTGTCAGTTCTATCAGTAT
CACCTGTTTTGTATGCTTGGACCATAAGACCACATCTGGTCTGAGCCTTG
TTGCCACTATCTCTTCTGGGAAGACCAGCTTTCTGTCCAAATCAACCTGC
ATGGCCCAATCAGTTGCTGTTGCAAATATGCCTCCTTCCTCTATCTTCCT
CTTTGGCCCATTCTTTGCTTCTCCCTCCTTCACAAATCCTATGAACTGTG
GCCCCTTTCTGCTACGTTGTCTTTTCTTCACTCTCTCTTCCTCCAGGGCT
ACTGCTAACACCCTCAGCACTTTGTCATGCCTCCACCGGTATCTTCCTTG
GCTCAAGGCCACTGGGCACCCTGAGAGGATGTGGCTCAGCGTCCCTCTTT
TCCCACACAAACCACAGTTTTCTTCTTCCTGCATGCCCCATCTTTTCTTG
TTTGCTGGAGTGGGGAGTAAATCGTACACAGCTTTGATGAGAAACTGGAT
TCTCAGGGGCTCCCATCTGTATAACTCGCTCCACATTACCCTTCTGTCCT
TTATTCCTTCCCATCTCGTCCATGCACCCTGAGATCCTTGACTCACTGCC
TGTGCTCTTCTATACTCCTCCTCCTTCCTTCTAATCTCGCTCTGGACCAT
GTCCCTTCTTTCCTTCGGTCCTGCGGTGCACCATCTCTGATTCACTGTTC
TACTGGCACCCAGTCCCAATCTTCCCTGTGCCACCACTCCTATTATGTCT
CGATGTCTCAGGTTACTTTTCGCTTCTTCAACTGCTGTCCCCACGGCCCA
CTTCCTTCCAGTTCTCATCTCTATTCCTGCCTGGCTGACTCTTTCATCTC
TACTTCCTTCCAGGGACATTACAGCTCTTGCTTTGCAGACTTTGTATTCC
TCCACTACTGATGTCAATGGGAGTTGCAGCCTTGAGGTTCTGCAGTACAA
ACCGATCTTGCTTAGGCTCGGTGGGAGGCCCATCCATTTCCTGAGTTGTT
TACTGATCTTCCTTTCCACCGCTTCTATAGTTGTAAGTGGGATGTCGTAC
ATCGTCATTGGCCACGTTATGCTGGNCAACTGCTGTCCCCACGGCCCACT
TCCTTCCAGTTCTCATCTCTATTCCTGCCTGGCTGACTCTTTCATCTCTA
CTTCCTTCCAGGGACATTACAGCTCTTGCTTTGCAGACTTTGTATTCCTC
CACTACTGATGTCAATGGGAGTTGCAGCCTTGAGGTTCTGCAGTACAAAC
CGATCTTGCTTAGGCTCGGTGGGAGGCCCATCCATTTCCTGAGTTGTTTA
CTGATCTTCCTTTCCACCGCTTCTATAGTTGTAAGTGGGATGTCGTACAT
CGTCATTGGCCACGTTATCCTGGGCAAAAGACCATACTGGTAGCACCAGA
CCTTAAACTTCCCCGGCAGTTTACTTTCCTCAATTGCTTGCAGGCCCTTT
TTGACTTGCTGCCTGAATTCTTCGATGTTATTCTGGTCTCCTAGTGATTT
GTCGAACTTCTTCCCCAGGCTCTTTATCGGTTGTTCTGTCACTGAAGGTA
TGGTCTCTCCCTGGATGTCTAGCTGGATCCGGTCACTCACTTTTCCTTTC
CTCAGCACCAGCTTTCGACATTTCTTTGCTTTAAACCTCATCCTTGCCCA
AGTGGCTGACTTCTCTAGACTCCTCAGCATCCATCTGGTACTTAGCACAC
TCTCAGTTGTTAATGTCAGGTCATCCATAAAGGCTTTCAGCGGTTGTTGC
CTCACTCCTGATTTTCCTCTTGGCCCTCTGCTCTGCCCTATGGCTGGCTT
CATCACTAGGTTCATTGCTGCAACAAATAGTATTACTGAGATTGTGCATC
CTGTTATTATCCCTCTCTGCAGTCTTTGCCAGGCTGTTGTACTTCCATTG
ACTGTGAATCTGATTTGTAAACCATCAAGATACTGGAATATGATTTCCCG
TGCTTGCTGTGGTACATGGTATTTCTCTAGAGCCATCTTTATCAACTGGT
GAGGTACTGAGCCATATGCATTTTCAAGGTCCAGCCAGACCACTGAAAGG
TCTTTCTTTCCTGCTTTTGCCTCCTGTATGAGTTGGGTTATAATACTTGT
GTGTTCGAGGCATCCTGAGAAACCTGGTACACCTCCTTTTTGTATTGATG
TATCAATGTACTTGTTCGCCAACATGTAGTTCAAGAGCCTCTTGGCCAAG
ACTGCAAAGAATATCTTGCACTCCACTGACAGTAGCGATATTGTCCTAAA
CTGGTCTACTTTCTCTGCTTTCTCCTGCTTGGGGCAAAACACACCCTCTG
CTCTCTTCCAGGATTCTGGTATCGCTCCTTTCCTCCATAATACTCTGAGG
AGTTTCCACAGCCTTCTTGTGAGCTTGGGGCATTTCTTGTATACTTTGTA
CGTAACTCCACTGGGGCCTGGAGCTGAACCTGCTCTTGCTTTCTGTATTA
CATCTTTGACTTCTGCCAACTTTATCTCACTACAATCCATGAGATGTTCT
GGTTCCGGTTCTGCTGTTTCCTCTCCCTCCCCTAGGGGCCTATCTCTGTC
CTGATCACCATGTGTTCTTCTACTTCCTCAATGCTGCAGGTCAGTCTCCC
ACTGGTTTTTGCGCCCAGCATCTGCTTGGAGAATTTGAAGGGATTTGCCA
CGAACGCTGCCCTCCGTCTTTCTTTGTTTTTCCTCTTTCTCCTAGTTCTT
TCCGCTCTCCCGAGGCTGATTAATCTTTTCCTTAGCCCATCTCTCAATTC
CTGGAGGGCCTCTCTTTCTGCCTCCTCTGCTCTTCTCCATCTCTTCCTAA
GAGTTCTCAGCTCCTTTCTAATCCGTTTCCTTTCTCTCTCTCGGCGGTTA
GGCTGTTCTACTCGCTGTCTACCCTTCCCTATGGGCTTTTCTCCGAATCT
CTCCGTACCGACGCTGTGTACAATACTCATCATTGCTTCAATTTTCCTCT
CAGCTGTTCCTCTCTTGAAGTTTCTTCGGGCAAGAACTTGCAAATAAAAT
CATTAATATTCTTAAAAACTTATCTCAGACAATAGACGTATACATAAAAG
TAAGACTTTTCATACTCAACTTAAGATAATGTTTGTTGATTGGTTAGGTA
TATACGACTGGGATGCTGCATCACAGACGTACA Coding sequence (CDS) from alignment at Sc0000029:1013070..1018102+ >transcript:BL77396_cuf0 ID=transcript:BL77396_cuf0|Name=transcript:BL77396_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2796bp|location=Sequence derived from alignment at Sc0000029:1013070..1018102+ (Branchiostoma lanceolatum)
CCATCGAACACAGCTCGGGCCGACTGTTCCTCCCCCTACACACACGGAGA
GACATGTTCATACCGGTGCCATACCGGGTACACCCAAGTCTCCGGCAGCA
CAGTAAAGACCTGCTCTAATGGACAATGGACTGGGATTGAGCTGGTCTGT
AAAAAAGTGATTCAAGTCCCAGATGACCAGATGGGAGGACTAGTGACCAA
GTACGCACCAAAGGTTTGGCTGGCGAATGGTGAGGGGTACAAACCTTCCA
GCGTCGGGTTTCACCTTCAGAACGTCAAGGTGCACGATGGCGGCAGAGTC
TATTCCAGCACACCGTCGACTCTTCCCACCTGTCCCGACAACTGTTACCT
GAGCTCCAACCAAGGCCTGTCAAAACCCTCAAGCACACTGCCTTTCTTCG
GTGGAGAGCCAGTCGGTCCTACTCAGCAACCTCCTGTGTATGCTGTTTGG
AAGCGAATCAATGGTGTGACTACAGACATCTTCTACTGGATGTTCTACCC
CTACAACAGGGGGAAGAAAGTTTGTATCGGATTCAGGGCTTTTGGAAAAT
GCATCGGTGGCTACTCTAATTTTGGACATCACGTGGGTGACTGGGAACAC
ATGACCGCTCGTCTGGTGGGCGACCAACCAAGTAGCATCTATGTCTCAGC
TCACAACTTTGGAGGTATATACGACTGGGATGCTGCATCACAGACGTACC
CATCGAACACAGCTCGGGCCGACTGTTCCTCCCCCTACACACACGGAGAG
ACATGTTCATACCGGTGCCATACCGGGTACACCCAAGTCTCCGGCAGCAC
AGTAAAGACCTGCTCTAATGGACAATGGACTGGGATTGAGCTGGTCTGTA
AAAAAGTGATTCAAGTCCCAGATGACCAGATGGGAGGACTAGTGACCAAG
TACGCACCAAAGGTTTGGCTGGCGAATGGTGAGGGGTACAAACCTTCCAG
CGTCGGGTTTCACCTTCAGAACGTCAAGGTGCACGATGGCGGCAGAGTCT
ATTCCAGCACACCGTCGACTCTTCCCACCTGTCCCGACAACTGTTACCTG
AGCTCCAACCAAGGCCTGTCAAAACCCTCAAGCACACTGCCTTTCTTCGG
TGGAGAGCCAGTCGGTCCTACTCAGCAACCTCCTGTGTATGCTGTTTGGA
AGCGAATCAATGGTGTGACTACAGACATCTTCTACTGGATGTTCTACCCC
TACAACAGGGGGAAGAAAGTTTGTATCGGATTCAGGGCTTTTGGAAAATG
CATCGGTGGCTACTCTAATTTTGGACATCACGTGGGTGACTGGGAACACA
TGACCGCTCGTCTGGTGGGCGACCAACCAAGTAGCATCTATGTCTCAGCT
CACAACTTTGGAGGTATATACGACTGGGATGCTGCATCACAGACGTACCC
ATCGAACACAGCTCGGGCCGACTGTTCCTCCCCCTACACACACGGAGAGA
CATGTTCATACCGGTGCCATACCGGGTACACCCAAGTCTCCGGCAGCACA
GTAAAGACCTGCTCTAATGGACAATGGACTGGGATTGAGCTGGTCTGTAA
AAAAGTGATTCAAGTCCCAGATGACCAGATGGGAGGACTAGTGACCAAGT
ACGCACCAAAGGTTTGGCTGGCGAATGGTGAGGGGTACAAACCTTCCAGC
GTCGGGTTTCACCTTCAGAACGTCAAGGTGCACGATGGCGGCAGAGTCTA
TTCCAGCACACCGTCGACTCTTCCCACCTGTCCCGACAACTGTTACCTGA
GCTCCAACCAAGGCCTGTCAAAACCCTCAAGCACACTGCCTTTCTTCGGT
GGAGAGCCAGTCGGTCCTACTCAGCAACCTCCTGTGTATGCTGTTTGGAA
GCGAATCAATGGTGTGACTACAGACATCTTCTACTGGATGTTCTACCCCT
ACAACAGGGGGAAGAAAGTTTGTATCGGATTCAGGGCTTTTGGAAAATGC
ATCGGTGGCTACTCTAATTTTGGACATCACGTGGGTGACTGGGAACACAT
GACCGCTCGTCTGGTGGGCGACCAACCAAGTAGCATCTATGTCTCAGCTC
ACAACTTTGGAGGTATATACGACTGGGATGCTGCATCACAGACGTACCCA
TCGAACACAGCTCGGGCCGACTGTTCCTCCCCCTACACACACGGAGAGAC
ATGTTCATACCGGTGCCATACCGGGTACACCCAAGTCTCCGGCAGCACAG
TAAAGACCTGCTCTAATGGACAATGGACTGGGATTGAGCTGGTCTGTAAA
AAAGTGATTCAAGTCCCAGATGACCAGATGGGAGGACTAGTGACCAAGTA
CGCACCAAAGGTTTGGCTGGCGAATGGTGAGGGGTACAAACCTTCCAGCG
TCGGGTTTCACCTTCAGAACGTCAAGGTGCACGATGGCGGCAGAGTCTAT
TCCAGCACACCGTCGACTCTTCCCACCTGTCCCGACAACTGTTACCTGAG
CTCCAACCAAGGCCTGTCAAAACCCTCAAGCACACTGCCTTTCTTCGGTG
GAGAGCCAGTCGGTCCTACTCAGCAACCTCCTGTGTATGCTGTTTGGAAG
CGAATCAATGGTGTGACTACAGACATCTTCTACTGGATGTTCTACCCCTA
CAACAGGGGGAAGAAAGTTTGTATCGGATTCAGGGCTTTTGGAAAATGCA
TCGGTGGCTACTCTAATTTTGGACATCACGTGGGTGACTGGGAACACATG
ACCGCTCGTCTGGTGGGCGACCAACCAAGTAGCATCTATGTCTCAGCTCA
CAACTTTGGAGGTATATACGACTGGGATGCTGCATCACAGACGTAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000029 | genome | Sc0000029:1013070..1018102 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL77396_cuf0 |
| Biotype | protein_coding |
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