|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL77319_cuf0 >transcript:BL77319_cuf0-protein ID=transcript:BL77319_cuf0-protein|Name=transcript:BL77319_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=296bp
MADQLVDGPPTKRQKTSSPTITPTDNNSEFFGKLLDQLGGELPDELDTTS
GADGLANINGTAGNDAVSHQQPPPPQQAAQPANQTNDSTVQRHQQLSQLL
QGNTPGSLSTQNVTNSSGPNSTASPQQNHQTSNQTPQTQGQPCASSPNVA
NANTMRSPLSNNLQSPPSSVGSSASGTPSSMSFTMSSDSSISTTSIANSI
ASNTPNLNSINPSQMMNSVSSGIVSSGQHNQMLNGPLMATSQNAMGPGMN
RNVVSSAGIGNMLNSMSPGHSPQMTPNLGTHPAVVNSGGQMKVRTH Run BLAST on NCBI mRNA from alignment at xfSc0001106:1..3375- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL77319_cuf0 ID=transcript:BL77319_cuf0|Name=transcript:BL77319_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3375bp|location=Sequence derived from alignment at xfSc0001106:1..3375- (Branchiostoma lanceolatum)
ATTTGGTCTCTTCTCGCTTCTTAGTAATATTGTAAATATAGGTAGAAGTA
TGTCTGATAATTAAGGGTTTATCTAAAGCCATTAGAAATATGAATTTTTC
AGCGTTCCCAAGATGTTTCAAATGGGGAAACCTACATTGAACTTGTTTGT
AATAATATCTATAATAGATGGCTTTGAAGTTTTGAATGGAAGTCTTTCCA
GTAGTTGGTGATAAAACAGCCATGATGTGTGGCTTGGATTTTCTATAATG
AAGGAATTTCTGCATGCTTGAGGTATAAAATTCTACAATGAACTTAGCCA
ACCCATCATTCACCCCGGGTCAGCTGACGGATACCGCAAAGGGAGCTGGG
TATTTAAAGCTTCCCGTCGTCCTTTGTGCTCGTGAGCGGAAAACCCCGAT
GAATAACGAGGGAGAGGTCACGTGCGCCACGTGAAGAACTGACCAATGGT
TATAATGTATTTTTTTCACGTGATCAGATATCCGGTCGGCCATTTTACCT
TCGGCAAAAATCGTAGACTTCGGGTCGGGCTCTCGTTGTTGCTTTTCTGA
CAAGCGTAAAAACTTTTCATCAACAGCCGCCATTTTGACCAATTTCTGGA
GGGGAAAATCGTGGATTTCTTTCGTCCTCGGCGTCTCCTTCCTGGATCCA
ATCGGCTCGTGGTCCATCCAAGGAATCAACCATAACCTATGGCTCCGATT
TGGAGGGTATTTGTGCCGCTAGGAAGGTGATACGTTTGGCAGCGAAAGGC
TTCCCGACGCCCGAGGAATATTGTTTTTGTGGCTGTGGAATTAAGGCGAT
ATTTTGATGATCCTGTGCCGTATCAGGCCGCCTAGCCCGCCCAGAGGTAA
TCGGAATCTGCTGAAAATCTCTCTGGTGAAAGTTTGAAATCATGGGAATC
AGCCTATTGCCGTTTTGAGGGTCTGATTTTCCCGCAACAAGTTCTAGCTG
TTCTCGGACCTTGGGCGAACCCCCTCATAATGGCCGATCAACTTGTGGAC
GGGCCGCCGACCAAGCGACAGAAAACGTCCTCACCAACGATCACGCCTAC
CGATAATAATTCAGGTAAGTTGTCCCAATCGGATATTAAATTTCTTAGCT
GAGAGATACTGCAAATTTTGTTGCTCTCTGTTCGGTTTTCTTAAAGATTA
AGGCAATCTTTGAAGTTGAAGTAATATCGCCCGAACAGGTTTACAACTGC
GAGAGAGTGTGTGTAGGAGGGGGCCCCTCCACCGTACATGCTGTTTGTAA
CACGACGAGATTATAACGGAAACTATCCAAGCGGTCTGTCGTGTATCCGT
AACCCCCATTTCGTTTTCGCGTTACAGAATTTTTCGGGAAATTACTGGAC
CAGCTAGGTGGGGAGCTTCCAGATGAACTGGACACGACGTCAGGAGCCGA
CGGGCTCGCCAATATCAACGGGACTGCAGGGAACGATGCGGTGTCGCATC
AACAGCCACCGCCGCCCCAACAAGCGGCACAGCCCGCCAACCAGACCAAT
GACTCTACGGTACAGAGGCATCAGCAGCTCTCGCAGCTTTTACAGGGAAA
TACTCCTGGCAGCTTGTCCACGCAAAATGTAACGAACTCCTCTGGTCCAA
ATTCTACTGCAAGTCCGCAGCAAAATCACCAGACTTCAAACCAAACACCA
CAGACTCAGGGCCAGCCCTGTGCTAGTAGCCCAAACGTTGCAAACGCCAA
TACTATGCGAAGCCCCTTGTCAAATAACTTACAATCACCACCAAGTTCTG
TGGGTTCCAGTGCATCAGGGACGCCTTCTTCCATGTCATTCACAATGAGC
AGTGACTCATCAATCAGTACCACAAGTATAGCAAATAGTATAGCTTCGAA
TACTCCAAATCTGAACTCAATAAACCCCTCCCAAATGATGAACTCAGTTA
GTTCAGGGATAGTCTCGTCAGGACAGCACAATCAGATGTTGAACGGTCCT
CTCATGGCCACCAGTCAAAATGCCATGGGACCTGGCATGAACAGAAATGT
GGTTAGTTCTGCCGGAATAGGAAATATGCTCAATTCCATGTCCCCTGGAC
ACTCACCGCAGATGACCCCCAACTTGGGAACACACCCAGCCGTGGTCAAC
TCAGGTGGACAAATGAAGGTAAGAACTCATTGATCACTTATATAATACCT
ATGGATGGAACAGTGTCTGCTTGTCTCTGCTTTCATTTTTTTGTCTGTAT
CAGGATAATTTAGATATTTTTGTGGAAAGTTTCAACATCCTGCAAGCGGT
ATCAAGGTATCATGCTTTGTTGACATTGAAAGTTTCAGAGTGACACACCT
CCAGCATGCCTGTTACAATTCAATGTTTTTTCATCTTGCTAACCTGAAAA
TAAAATGCCACATTTAATATGCTAAATCGTCAGCAGTTGTTGAATAACTA
CAGTGTTTTCAAATGCAGCTTTCAACAATTTGAAATTGCAGGAAATATTA
AAGTTTCAGTCCTAAGTAGTTTATTTCCCAGTCATTTTTTGAGGGGTTGT
TGTACACAAAACATACCGGTGTGCTTTACTGGCAGACTACCATAGTTAAC
ATTCTGGTAATACTTGTGCTTTCCATACATAGTTTAAGACAGATTTTCAT
GTTTAGACAGTGGATAAATATGGTATTTTTATATTGCTTTTGTATTTTCA
TGTTTTGCATTATGCTTCTTATAGACCACATGTGGTCATCTGTGCAACTG
GGCAGGAATATGCAATAAAGACTGCTAAGTATTATATATATATGTTAAGA
TTGAAAAACAGTATGTTACTGTACTCATGGAAAGGAAGAACTTCTTATTA
TATGCTTCCCATTATGGTCTTCAAGTTTAGTGCAAAAAATTAGTATAACA
TCTCATTGATTATGGTTGCCTGAAGTGGGAAAGGAATATTTTTTCTGCCG
ATTCTGGTATTGTATGTATGTCAGTTGTCACTGCATAAGACATAGATGTA
CAGTAGTTGGTATGGTTGAAGCCGAAATGACACATTATTTTTTAAGAACC
TCCACCTTTTGTGAGCTGTACGTCAGTGCTTAATATTTTACGTCAATGTT
CCGAAAATGGAGTGACAGGTCACCCTGTAACATTTTTTTTGCAGTTTTTT
TTCCTGTCTTATGAGCTTCATGTTGTGGCCAGGTATTGTAACTTGTAAAG
GTAGTCTTGTACATATTTGTTCTTCTATTAGTTTTGTCCTGATGTAATGC
CTTTGTCCTCTGACTTTTCTTGTGCTCTGAAAGTGTGTGGACCTTGACAT
TATTGTCATAGACATGAAACTATTGAATCATGTTATATTTTAATAGTATT
GTGTTCGTTGAACTTGTTGTTTGTTAATGGCCACGTTTGTTACATGCATT
GTTGGAGTTGAAAAATTCTGGTAGT Coding sequence (CDS) from alignment at xfSc0001106:1..3375- >transcript:BL77319_cuf0 ID=transcript:BL77319_cuf0|Name=transcript:BL77319_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1782bp|location=Sequence derived from alignment at xfSc0001106:1..3375- (Branchiostoma lanceolatum)
ATGGCCGATCAACTTGTGGACGGGCCGCCGACCAAGCGACAGAAAACGTC
CTCACCAACGATCACGCCTACCGATAATAATTCAGAATTTTTCGGGAAAT
TACTGGACCAGCTAGGTGGGGAGCTTCCAGATGAACTGGACACGACGTCA
GGAGCCGACGGGCTCGCCAATATCAACGGGACTGCAGGGAACGATGCGGT
GTCGCATCAACAGCCACCGCCGCCCCAACAAGCGGCACAGCCCGCCAACC
AGACCAATGACTCTACGGTACAGAGGCATCAGCAGCTCTCGCAGCTTTTA
CAGGGAAATACTCCTGGCAGCTTGTCCACGCAAAATGTAACGAACTCCTC
TGGTCCAAATTCTACTGCAAGTCCGCAGCAAAATCACCAGACTTCAAACC
AAACACCACAGACTCAGGGCCAGCCCTGTGCTAGTAGCCCAAACGTTGCA
AACGCCAATACTATGCGAAGCCCCTTGTCAAATAACTTACAATCACCACC
AAGTTCTGTGGGTTCCAGTGCATCAGGGACGCCTTCTTCCATGTCATTCA
CAATGAGCAGTGACTCATCAATCAGTACCACAAGTATAGCAAATAGTATA
GCTTCGAATACTCCAAATCTGAACTCAATAAACCCCTCCCAAATGATGAA
CTCAGTTAGTTCAGGGATAGTCTCGTCAGGACAGCACAATCAGATGTTGA
ACGGTCCTCTCATGGCCACCAGTCAAAATGCCATGGGACCTGGCATGAAC
AGAAATGTGGTTAGTTCTGCCGGAATAGGAAATATGCTCAATTCCATGTC
CCCTGGACACTCACCGCAGATGACCCCCAACTTGGGAACACACCCAGCCG
TGGTCAACTCAGGTGGACAAATGAAGGTAAGAACTCATTGAATGGCCGAT
CAACTTGTGGACGGGCCGCCGACCAAGCGACAGAAAACGTCCTCACCAAC
GATCACGCCTACCGATAATAATTCAGAATTTTTCGGGAAATTACTGGACC
AGCTAGGTGGGGAGCTTCCAGATGAACTGGACACGACGTCAGGAGCCGAC
GGGCTCGCCAATATCAACGGGACTGCAGGGAACGATGCGGTGTCGCATCA
ACAGCCACCGCCGCCCCAACAAGCGGCACAGCCCGCCAACCAGACCAATG
ACTCTACGGTACAGAGGCATCAGCAGCTCTCGCAGCTTTTACAGGGAAAT
ACTCCTGGCAGCTTGTCCACGCAAAATGTAACGAACTCCTCTGGTCCAAA
TTCTACTGCAAGTCCGCAGCAAAATCACCAGACTTCAAACCAAACACCAC
AGACTCAGGGCCAGCCCTGTGCTAGTAGCCCAAACGTTGCAAACGCCAAT
ACTATGCGAAGCCCCTTGTCAAATAACTTACAATCACCACCAAGTTCTGT
GGGTTCCAGTGCATCAGGGACGCCTTCTTCCATGTCATTCACAATGAGCA
GTGACTCATCAATCAGTACCACAAGTATAGCAAATAGTATAGCTTCGAAT
ACTCCAAATCTGAACTCAATAAACCCCTCCCAAATGATGAACTCAGTTAG
TTCAGGGATAGTCTCGTCAGGACAGCACAATCAGATGTTGAACGGTCCTC
TCATGGCCACCAGTCAAAATGCCATGGGACCTGGCATGAACAGAAATGTG
GTTAGTTCTGCCGGAATAGGAAATATGCTCAATTCCATGTCCCCTGGACA
CTCACCGCAGATGACCCCCAACTTGGGAACACACCCAGCCGTGGTCAACT
CAGGTGGACAAATGAAGGTAAGAACTCATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| xfSc0001106 | genome | xfSc0001106:1..3375 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL77319_cuf0 |
| Biotype | protein_coding |
|
