transcript:BL77300_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL77300_cuf0
Unique Nametranscript:BL77300_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL77300_cuf0

>transcript:BL77300_cuf0-protein ID=transcript:BL77300_cuf0-protein|Name=transcript:BL77300_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=220bp
RTSGAAATLFTQPFGNHRGLTRGGGRLSTEREASGEPVEEMRMWRRQHVT
SQISRNTLRGRSMDGVMPNRKQQLLYTSEGRQGFNSHADETDPERIQQII
KKAIEDADWILNKVCMRQTKFSTNQLQSLTRNEQSTASVTSRHEMEHVTH
RHHHHCRSVCNTEAGRDCPTHLLISYAPSHWQPILARSHSIVLLQVIDNC
PPPPPPPPPXGCWWICSELH
Run BLAST on NCBI

mRNA from alignment at Sc0000790:1611..4914-

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL77300_cuf0 ID=transcript:BL77300_cuf0|Name=transcript:BL77300_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3304bp|location=Sequence derived from alignment at Sc0000790:1611..4914- (Branchiostoma lanceolatum)
AGAACATCAGGGGCTGCAGCTACGCTTTTCACCCAACCTTTCGGCAATCA
CAGGGGGTTGACTCGGGGAGGAGGTAGACTCTCGACCGAGCGCGAGGCGT
CGGGAGAGCCGGTGGAAGAGATGCGGATGTGGCGGAGGCAACACGTAACC
AGCCAGATCAGCCGAAACACACTACGGGGGCGATCTATGGACGGGGTGAT
GCCAAACCGGAAACAGCAACTACTGTACACATCCGAAGGACGTCAGGTGT
GCACGCCGTTTATAAACGACCAATTTTCTGGATAATCCCCGTTCGTGGTT
TCCCCTGGCTATATGTTTCCTCACCATTCATACACGTTTGTGAGGGTATT
ACGTGTTCGATATGGCTTGTATTAAAAAGATATAGCTTTATATTGATTTA
CCTGATGGAATTACGTCAAGGCGCGTACTTATATGCGAGAAATTTGACGT
CTTTTGCGTCAAATTGTCTGCAAAGGTGAAGGAGGAGCGACGCGCTAAGT
GAGTCGGGATATGTTTTGATCGCCCGGCCAACTCATTGTTCCCTAGAGGG
ACACTAAAATTTATATTCTAGAGTAAAACATCGCAAGAAGCGTCAGTTGG
ATAGAATACTACATTGCTATAGGTTTTGGCTTGATTTTTATCGCCTAGAA
ATGACCAAGTAGTCTTTCAGCCTTTGCGGAAGTGATTGCAATATTTTGCT
GAATGGCCTGGTCCACAACGATCGCGCGCGACCGAGGAAGAGACATTTCC
TCTTTGATCAAATAAATGGCTAAGTCTGATTCCAGGCAAACAGAAAAAAA
TATGAAAATTTGTAGTTTATTCCAGAGCAAAGAGTTTGTAGATTGTTGTT
GTCAACGTTTTGATTTGTTTACCCCGTTAACCTTTGACCTATATAAACCC
CTGTCGTCTGCTATGTCCTGTCCTCGTTGTCCCAGGGCTTGGATTTCGCA
TAGTCGCTGTTTTGACTAGATTTGTGCTTTAAAATGGTTCCTGTTGTGGG
ACGGATTGCAAAGTCTGTCGTTAACACACCCCGTCTGCTCTATCGGTACC
TGTTCAGGTGCTGTGACAGACTACCGGAGGGCGCAAAAGATCACTACAAA
CACTACGTTAGACAGGTGTGTACGGAAGGGGGAGGGGGGCAGCACCTCAT
CGTGTAGCAAGGTTGGAATGAGCGAATTTTAACTTAACCTTGCAAAGGAT
ATTGACATTACAGAGTTCCTGCTAATTTTACTGTTGGATGGAACACATCT
TCGCTACCACAAATTGAATAACTTGTTCTAAGAATTTTGTTGAAGTTATT
ATAAGTTATACAGTACTAGTTAAACTAGTATAATTTGTACTGTACTAGTA
CTAGTTAAACTAGTACAGTATAACTTATAATAACTTCAACAAAATTCTAA
ACAAGTTATTCAATTTGTGGTAGCGAAGATGTGTTCCATCCAACAGTAAG
ATTAGCAGGAACTCTGTAATGTCAATATCCTTTGCAAGGTTGAGTTGAAA
TTCCCTCATAATGTAATTTACAACGTTGCTACACGATGAGGTGCTGCAAC
CATAACCCGACTCCTCCTGGGACAAGTTGCCAAGTTAGACGGTATCAGGA
CAACTCAACACCTTGGCAACTTGTCCCAGGAGGACTCGGGTTATGTTTAT
GGTTAGAATTAGGTTAAGGTTGAGTTAGAGTTAATGTTAGGTTAGAGGTT
GTCAGTTACGAATACAGTAGGCATCTTCTTGACAGTGAAATGTCTCGAAA
CCACCCTAGACATTACACAGATTTGTCCTGATTTGCTAGACGTAAAGTTG
TTGAGGTGTCAAGTTGTCCAAAATTCTGGTGAAACACCTCTACTGCATGT
CACACATACGTGGACGAGTGTTGATAAGTGTAATATGAAATGCATGTACG
TCACTTCTTGTAGGGGTTCAACAGTCATGCCGATGAGACTGATCCTGAGA
GAATTCAGCAGATCATCAAGAAAGCCATAGAGGATGCAGACTGGATCCTC
AACAAGGTCTGTATGAGACAAACCAAATTTTCAACTAATCAACTCCAGTC
TTTGACAAGGAATGAGCAATCCACTGCTTCTGTGACGTCACGTCATGAGA
TGGAACATGTAACTCATCGTCATCATCATCACTGCAGATCAGTGTGTAAC
ACAGAGGCGGGCCGTGATTGTCCTACACATCTTCTTATCAGTTATGCCCC
ATCCCATTGGCAACCCATCTTGGCAAGGTCCCACTCGATTGTCCTTCTGC
AAGTCATTGATAATTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCNTTGGT
TGCTGGTGGATTTGTTCAGAGCTTCACTGAGGAAGCTGCCTAGCCTGGAT
TAACATTAATCCACCGGGTTGCATGAATCCGCCACATTGAAAAACAATGA
GTTTGAGAGATCTCCAGTGCAGCACCCCCATGTATGCACAGTTTAGATAT
ACAGGAGTGCATTGTGTTGGGGAACGTTGGGTTTGAGATCTTTTTGGACG
TATCTTTTCAGGGTGGCGGAATTATTGTACCCTGGTGGAACTATGTTAGT
AGATGTTAGTTTTTGCTGTTCACAGAAGATGTTATCACTGGAGAGAGTAT
CAAATGTCTATGACAGTTTGTATGGAACTTATCTACTGAACAACGTTACT
GACATCTTCGTTGTCTGAGCCAACCATAGTCTGTATAACGCAAACTCCAG
CTGTCCAGGGGCTTCTGTCCCCTCTCCGCAGCGAGCAGTTACAGGATGGC
GAGCGGTTACAGGAGGCTTGATTGAAATCAGGCTAAGCCAACCATAGTTA
TATGGATCATTGTAAACTCAGCTGCTTGATATTTGTATACTGTCCGAGAT
TGACACCGAAAAAATGCATGATATAGCAGTCAAGACTCAGGTTGTTACAT
GTATACTTATATGTATTTTATTTCTGTTTTCTTTATACAGGGTAGGTATG
CTCAGTGTTTAACACACTGCTTGACAGGCATGTTGGTATCTAATGCATTT
GCATTCAAGTTAAACTGACTGGTGTTGCCATATTTCTGAGAAAATATGTT
TTATTATTTACATCTGTACCATTTTGTATTCTTTATTCATTCATATGCAT
GTGTACCAGTACATGTACTACAATACTACATCTTGATAAGCACTACTGCA
CTAAAGCCTGTCCTGATCACCTGACTGATGTGTACAGTATCAACTAAGCA
TCAATCAAGTACATATACAAATATATGTATATATATCTATCAAGGTTAGA
TGTGCATTGTTACGTATTAAAGTGAAGATCTCTGTACTTGCATCTTGATT
CCTT

Coding sequence (CDS) from alignment at Sc0000790:1611..4914-

>transcript:BL77300_cuf0 ID=transcript:BL77300_cuf0|Name=transcript:BL77300_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1326bp|location=Sequence derived from alignment at Sc0000790:1611..4914- (Branchiostoma lanceolatum)
AGAACATCAGGGGCTGCAGCTACGCTTTTCACCCAACCTTTCGGCAATCA
CAGGGGGTTGACTCGGGGAGGAGGTAGACTCTCGACCGAGCGCGAGGCGT
CGGGAGAGCCGGTGGAAGAGATGCGGATGTGGCGGAGGCAACACGTAACC
AGCCAGATCAGCCGAAACACACTACGGGGGCGATCTATGGACGGGGTGAT
GCCAAACCGGAAACAGCAACTACTGTACACATCCGAAGGACGTCAGGGGT
TCAACAGTCATGCCGATGAGACTGATCCTGAGAGAATTCAGCAGATCATC
AAGAAAGCCATAGAGGATGCAGACTGGATCCTCAACAAGGTCTGTATGAG
ACAAACCAAATTTTCAACTAATCAACTCCAGTCTTTGACAAGGAATGAGC
AATCCACTGCTTCTGTGACGTCACGTCATGAGATGGAACATGTAACTCAT
CGTCATCATCATCACTGCAGATCAGTGTGTAACACAGAGGCGGGCCGTGA
TTGTCCTACACATCTTCTTATCAGTTATGCCCCATCCCATTGGCAACCCA
TCTTGGCAAGGTCCCACTCGATTGTCCTTCTGCAAGTCATTGATAATTGC
CCCCCCCCCCCCCCCCCCCCCCCCCCCNTTGGTTGCTGGTGGATTTGTTC
AGAGCTTCACTGAAGAACATCAGGGGCTGCAGCTACGCTTTTCACCCAAC
CTTTCGGCAATCACAGGGGGTTGACTCGGGGAGGAGGTAGACTCTCGACC
GAGCGCGAGGCGTCGGGAGAGCCGGTGGAAGAGATGCGGATGTGGCGGAG
GCAACACGTAACCAGCCAGATCAGCCGAAACACACTACGGGGGCGATCTA
TGGACGGGGTGATGCCAAACCGGAAACAGCAACTACTGTACACATCCGAA
GGACGTCAGGGGTTCAACAGTCATGCCGATGAGACTGATCCTGAGAGAAT
TCAGCAGATCATCAAGAAAGCCATAGAGGATGCAGACTGGATCCTCAACA
AGGTCTGTATGAGACAAACCAAATTTTCAACTAATCAACTCCAGTCTTTG
ACAAGGAATGAGCAATCCACTGCTTCTGTGACGTCACGTCATGAGATGGA
ACATGTAACTCATCGTCATCATCATCACTGCAGATCAGTGTGTAACACAG
AGGCGGGCCGTGATTGTCCTACACATCTTCTTATCAGTTATGCCCCATCC
CATTGGCAACCCATCTTGGCAAGGTCCCACTCGATTGTCCTTCTGCAAGT
CATTGATAATTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCNTTGGTTGCT
GGTGGATTTGTTCAGAGCTTCACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL77300gene:BL77300Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL77300_cuf0-E1BL77300_cuf0-E1-1564476830-498794Branchiostoma lanceolatumexon
BL77300_cuf0-E2BL77300_cuf0-E2-1564476830-498792Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL77300_cuf0transcript:BL77300_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000790genomeSc0000790:1611..4914 -
Properties
Property NameValue
Transcript idBL77300_cuf0
Biotypeprotein_coding