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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL77227_cuf3 >transcript:BL77227_cuf3-protein ID=transcript:BL77227_cuf3-protein|Name=transcript:BL77227_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=211bp
MTHRDDDFIHPPGGKRWNIFGHHAFYNRTRFRQLMAPNTRYVAILREPLQ
RLKSAFQYFHLAKGFPGLQNKTPKGIAPVTTYLARSRYWDPLYKPWSTVT
VKEREHFCFRNCMSRDLGFAEKDYDNHTAVEEFVRGIENDFKTMLIIEYL
PASLILLKRRMCWTFYDILYTMGRHPRQQRYKLKTPITEEMKRTFYQHNY
ADLILYTRFNE Run BLAST on NCBI mRNA from alignment at Sc0000255:4663..7528+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL77227_cuf3 ID=transcript:BL77227_cuf3|Name=transcript:BL77227_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=2866bp|location=Sequence derived from alignment at Sc0000255:4663..7528+ (Branchiostoma lanceolatum)
AGTATAATCATATGGTATCTACATTTCAATGGTTGTTTTAAAGCTATCTA
TTTGCACGGTTTATCATAAGCAAATCGATGATGATTTTCTTTTTGATGTC
ATGAATAATAACTATTTTTGTGTATTATTGATATTTGTCTATCAATGTTA
CGCGTCCACTTACATATAGAAGTGCTGCAACAGAACTGACGAACTGACAT
GACACTATGTAGACTTGCCCTACTCCTGCGAGTGGCTGTCAACATAAAGA
AGTGGACCAGGTATTCTTTACAAAACTGCAAAAGTCATAACGTTGTTGTT
TCGATGTTATGACTCACAGAGATGACGACTTTATCCATCCCCCTGGCGGA
AAACGCTGGAACATCTTCGGTCACCACGCCTTTTACAACAGAACACGCTT
TCGCCAACTCATGGCCCCCAACACAAGGTACACATTGCTTCGTTGGTAGT
GATGCCATACTGATTTGATTATATGGATGACATCATCTGGGCAAAATCGC
TGCACCAGGTCATAAGACAGTAAGGTTTGATCCACTCACACCGGGGTGGA
CCCCTACTCTTTTGGATAAGTGTAGTGGGTTCTTTAATGTGCTCGAGGCG
TGGCGTTCCTCAAACACGGGACATCCAGCTAGCTTTACATCCCGTCCGAG
AGAACGTCCCTAACTGAAGCTGGGTACTCATTTTCACCTGACCGAAGTGA
GGAAACTGATGTTAAGTGTCTTTCTCAATGATATACCAAGGATATAAGGC
TATGGAATCATAAAGCGTCTGGCCCTCTAAAGAATTTGAACCTCTCGATT
TCAGGTCAAACACTATAGTAGTCAAACACCCGGCCTCCTTTCGAGGAAGA
GTGATTCCATGGAGTCAGTTTAGATATGGTCACGGAAATCATTCTGCAAC
ACTGAAGTCTCCTTTTGTTTCCAATCCAGGTATGTCGCCATTCTACGAGA
ACCTCTACAACGGCTCAAGTCTGCTTTCCAATATTTTCATCTCGCAAAAG
GATTTCCTGGACTTCAGAACAAAACTCCCAAAGGCATTGCTCCCGTCACG
ACCTACCTTGCCAGGTCACGATACTGGGATCCGCTGTACAAGCCATGGTC
AACCGTTACTGTGAAGGAAAGAGAACATTTTTGCTTCAGGAACTGCATGT
CACGCGACTTGGGATTTGCAGAGAAAGATTACGACAACCACACTGCCGTT
GAAGAGTTCGTGCGAGGCATCGAAAACGATTTTAAAACAATGCTAATCAT
AGAGTATCTTCCAGCATCCTTGATTCTACTTAAGCGACGCATGTGTTGGA
CTTTCTATGACATTCTTTATACAATGGGGCGTCACCCCAGACAGCAAAGA
TATAAACTTAAAACACCCATCACAGAAGAGATGAAACGAACGTTCTACCA
GCACAACTACGCCGACTTGATACTATACACTCGTTTTAACGAATAATTAC
ACCAGCAGATCAGTCGAGAGAGTGCTGACTTTCAAGATGAATTAAATCAT
TTCATGCGTGTTAACAAGGACGTCGATATTTACTGTCGTTCGAAGACAAG
GCTAGGAAAAGGAAATATGATCGTTAAGGAAAGCAGGTGGAACGACGCTT
TCTCTGTTGGCAAATCACTTTGCGCGCGATATGGTCAAGATAGAAAGTAT
TGGGACAAGCTACTGAGAAGAAGGTACCAACAACATACTCAGAACAAAGA
TTTAGGAGAAGTAAAGAGTGTTGTTCACTCTACCAAATCCCGTCCTCGAC
AACGCCGAAAACGTCCTCCTCGAAAACGCCGAAAACGTCCTCGAAAACCC
CGAAAATTACACGGTAAAGAAAGCACTGAGCTCAGCGACCTGCGAGTAAA
GCACGAGTGCACTGTTAACCACGACTGTGTCTAGTCCTAAGTAACATGTC
CAAAACATAATTAGATCTCGTATAACTTAATGGTTATTACAATTGTGTGA
AAAATAACAACAGACTGCACCTTGTGAGAGTTCTTGACAGACAAGAATAG
GAATAGGAAATAAAATCACCCTATAGATTCAGCTAACTTAAAGCCCCCCT
CTGACTGGACCCGTGGCACGCTGGCGGCGTCGCTGCGGCTGATCGAATTG
ACAAATTTTAAAGCACTCAACGGATTTCATCGACAGAAAACGAATCTTTT
TAAGCTTTGTTTGTTTTGTTGTCTTTTTGGCCATACTTGTACGTTTTGAA
TGATATTCCCACTATAAAGTCAAGGGTAACACAAGTCCAGTTTAGGACGA
AGCGACGCCGTCCAGTGAGAGGGGGGCTTAAACTACTAGTACCAGACCTA
GTCGGTCTGCTATTCACAGCCGTGGTGTTTACATCGTGGAGGCTTAAGCT
GGCTAATATTGTGACCAATATTGTTATAGCTCGCCATGCTGTCCATGTCA
AAATTCAATTGTACTTTCTTGTATTTTGTAACAGCAACAGGCTAGTTGGG
TAGCCCTGGCTGTGTATGCTGAATAGCCAAACCAATAAATAGATGAATGA
ATGAATACAGTGACCAAGAAGACTTATTCTTCAAGACACCTTTGAAACGT
ATAGACAATAGATAGATCAGGAATTGAAGTGCTGCACTTACAAGTATTTA
AGAATAGAAGACCGTCTGTATTTTGTATTTTGTAGCTGTAATTGTAAACA
ATAGACAGTGCATGTACTAAGTACTTTTCGAGTTGATATTAGATATTCTC
TGTAATATGTAAATACTAGTATTCCATCCAATTGCGACGTGTATTGTTAG
GTTTGCTGATCAATTTCATCATTGACTTTTACTGATCATTGACTTTTACT
GACCATTCTAGCTTATAATATACAGAACTTTATTTATTTTTTGTCATTTT
ACTTGTATCTCTAGTC Coding sequence (CDS) from alignment at Sc0000255:4663..7528+ >transcript:BL77227_cuf3 ID=transcript:BL77227_cuf3|Name=transcript:BL77227_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1272bp|location=Sequence derived from alignment at Sc0000255:4663..7528+ (Branchiostoma lanceolatum)
ATGACTCACAGAGATGACGACTTTATCCATCCCCCTGGCGGAAAACGCTG
GAACATCTTCGGTCACCACGCCTTTTACAACAGAACACGCTTTCGCCAAC
TCATGGCCCCCAACACAAGGTATGTCGCCATTCTACGAGAACCTCTACAA
CGGCTCAAGTCTGCTTTCCAATATTTTCATCTCGCAAAAGGATTTCCTGG
ACTTCAGAACAAAACTCCCAAAGGCATTGCTCCCGTCACGACCTACCTTG
CCAGGTCACGATACTGGGATCCGCTGTACAAGCCATGGTCAACCGTTACT
GTGAAGGAAAGAGAACATTTTTGCTTCAGGAACTGCATGTCACGCGACTT
GGGATTTGCAGAGAAAGATTACGACAACCACACTGCCGTTGAAGAGTTCG
TGCGAGGCATCGAAAACGATTTTAAAACAATGCTAATCATAGAGTATCTT
CCAGCATCCTTGATTCTACTTAAGCGACGCATGTGTTGGACTTTCTATGA
CATTCTTTATACAATGGGGCGTCACCCCAGACAGCAAAGATATAAACTTA
AAACACCCATCACAGAAGAGATGAAACGAACGTTCTACCAGCACAACTAC
GCCGACTTGATACTATACACTCGTTTTAACGAATAAATGACTCACAGAGA
TGACGACTTTATCCATCCCCCTGGCGGAAAACGCTGGAACATCTTCGGTC
ACCACGCCTTTTACAACAGAACACGCTTTCGCCAACTCATGGCCCCCAAC
ACAAGGTATGTCGCCATTCTACGAGAACCTCTACAACGGCTCAAGTCTGC
TTTCCAATATTTTCATCTCGCAAAAGGATTTCCTGGACTTCAGAACAAAA
CTCCCAAAGGCATTGCTCCCGTCACGACCTACCTTGCCAGGTCACGATAC
TGGGATCCGCTGTACAAGCCATGGTCAACCGTTACTGTGAAGGAAAGAGA
ACATTTTTGCTTCAGGAACTGCATGTCACGCGACTTGGGATTTGCAGAGA
AAGATTACGACAACCACACTGCCGTTGAAGAGTTCGTGCGAGGCATCGAA
AACGATTTTAAAACAATGCTAATCATAGAGTATCTTCCAGCATCCTTGAT
TCTACTTAAGCGACGCATGTGTTGGACTTTCTATGACATTCTTTATACAA
TGGGGCGTCACCCCAGACAGCAAAGATATAAACTTAAAACACCCATCACA
GAAGAGATGAAACGAACGTTCTACCAGCACAACTACGCCGACTTGATACT
ATACACTCGTTTTAACGAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000255 | genome | Sc0000255:4663..7528 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL77227_cuf3 |
| Biotype | protein_coding |
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