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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL77209_cuf1 >transcript:BL77209_cuf1-protein ID=transcript:BL77209_cuf1-protein|Name=transcript:BL77209_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=183bp
MNISLRTPVQTGCSDDDDDVIFLGTVENANNLDNAPDVIAQNNPLGTPQK
KGRNPSVIILGTPQKTRCESVAESPGQEGLLVTYCRPSDTDDYPHPRSAC
PHHPFSIASFDYIVCRGPYQQNAAHCDKCYCYVCDNPAKEVRLLLKYCSV
MHEIGTSLTPTIVNFLLKHHSTRMGMSCQTNSQ Run BLAST on NCBI mRNA from alignment at Sc0000011:1274008..1284034- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL77209_cuf1 ID=transcript:BL77209_cuf1|Name=transcript:BL77209_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=10027bp|location=Sequence derived from alignment at Sc0000011:1274008..1284034- (Branchiostoma lanceolatum)
TGTAGACTCACATCAGTTGCATGAACATCTCTCTTCGGACACCTGTGCAG
ACTGGGTGTAGCGATGATGATGATGACGTCATCTTCCTCGGCACTGTGGA
AAACGCCAACAACTTGGATAACGGTCAGTTTTGTTCGTTTGTCTCTTATA
ACTGGTTAACTGACTCAAGGCACAGCACACCAGTTTTGACAATGAAGTTT
ATTGCATATTCATGCCCCATTGATTGAGACTGTAAGTTAGATTGTCAAGA
GTCCTTAGTCTATCGTTAGCGTTCACCCTACGCTAATGTACTAAGGGTTA
GCGTACAAAGAAGAGCTTGTAAGCGAACTCCTGCTCTGGGCACCAACTCA
TGGGCACTCCTGTGTCGGGCGACCCCGACGGACCTACATAGACCAACTTG
TACCAAGTTGTACCAAGTTGGTCTATGTACCAAAAATCATGACCATCCAT
CAGGCCCTTCTTGAGTTATTCTATTTCAAAGTCTGAAGCAAAACCTGCTC
CTGCAGTTCCAAAAGCCCCTATAGGGGGGCCCAAACCTAGACCACTTACT
CTCTGTCCAAAGAGCTATCTACCACTCAAAAATCAGGACCATAGCATGTC
CAGAACACGAAATCGCTTGGGGACCCAAAATCTAATCATTTCCAAGTCTC
ATCAAGACCCACCCACCTACCAAATATCAAAACAATCCATCCAAGCCTTC
TCGAGTTATGTTGTACGTTACAAACAAGCACACAAACGCTACCCTAGCCT
CTGCATAACCTTCTCGGCGGAGGTAGTAATTTCTACCACAGAGGAGCTAC
CAAAGAACAAGGAGAGTGCTCCAAGTGTGATTGAACATAGCACTCCAAAA
AAGGTGTGTGTCCCAGTTACGCCTGATGACCACTAATGCAGATTTTTCCT
TTCTTCTCTACGATATTTTCCAGTGCCAGATGAGATTGCACAGAAGAACC
TACTTAGCACTCCACAGAAGGAGAGGACCCCAAGTCTGATCGTACTTTGA
ACTCCGCAGAAGACCCGGTGTGTGTCTGTCCCTGATTTGCCAGGTGACCA
CTAAAACAGATTTTTCCTTACTTCTCTACGATATTTTCCAGTGCCAGATG
AGATTGCACAGAAGAACCTACTTAGCACTCCACAGAAGGAGAGGACCCCA
AGTCTGATCGTACTTGGAACTCCGCAGAAGACTCGGTGTGAGTCTGTTCC
TGGTTCGCCAGGTGACCACTAATGCAGCTTTTTCCTTACTTCTCTACGAT
ATATTCCAACACCAGATGAGATTGCACAGAAGACCCCCCCCTCCCCAGTA
CAGAAGAACCCCCTCGGCACTCCACAGAAGGAGAGGACCCCAATTGTACT
ATCACTGTATCAGCCAAGAAGAAAGCCCCATCCTTAACCACAGTGGAAGA
TGACTGCTTTACTTTCCTTATCTTTAATAATTTCTACCACAGAGGAGCTA
CCAAAGAACAAGTAGAGTGCTCCAAGTATGATCGAACATAGCAGTCCAAA
AAAGGTGTGTGTCCCGGTTACGCCTGATGACCACTAATGCAGATTTTTCC
TTTCTTCTCTACGATATTTCCAGCGCCAGATGAGATTGCACAGAAGAATC
CACCTGGCACTCCACAGAAGGAGAGGACCCCAATTGTACTATCACTGTAT
CAGAAAAGAAGAAAGCCCCATCCTTAACCACAATGGAAGATGAATGCTTT
ACTTTCCTTATCTTTAATAATTTCTACCACAGAGGAGCTACCAAAGAACA
AGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGATTTTTCCTTTCTT
CTCTACGATATTTTCCAGTGCCAGATGAGATTGCACAGAAGAACCTACTT
AGCACTCCACAGAAGGAGAGGACCCCAAGTCTGATCGTACTTTGAACTCC
GCAGAAGACCCGGTGTGTGTCTGTCCCTGATTTGCCAGGTGACCACTAAA
ACAGATTTTTCCTTACTTCTCTACGATATTTTCCAGTGCCAGATGAGATT
GCACAGAAGAACCTACTTAGCACTCCACAGAAGGAGAGGACCCCAAGTCT
GATCGTACTTGGAACTCCGCAGAAGACTCGGTGTGAGTCTGTTCCTGGTT
CGCCAGGTGACCACTAATGCAGCTTTTTCCTTACTTCTCTACGATATATT
CCAACACCAGATGAGATTGCACAGAAGACCCCCCCCTCCCCAGTACAGAA
GAACCCCCTCGGCACTCCACAGAAGGAGAGGACCCCAATTGTACTATCAC
TGTATCAGCCAAGAAGAAAGCCCCATCCTTAACCACAGTGGAAGATGACT
GCTTTACTTTCCTTATCTTTAATAATTTCTACCACAGAGGAGCTACCAAA
GAACAAGTAGAGTGCTCCAAGTATGATCGAACATAGCAGTCCAAAAAAGG
TGTGTGTCCCGGTTACGCCTGATGACCACTAATGCAGATTTTTCCTTTCT
TCTCTACGATATTTCCAGCGCCAGATGAGATTGCACAGAAGAATCCACCT
GGCACTCCACAGAAGGAGAGGACCCCAATTGTACTATCACTGTATCAGAA
AAGAAGAAAGCCCCATCCTTAACCACAATGGAAGATGAATGCTTTACTTT
CCTTATCTTTAATAATTTCTACCACAGAGGAGCTACCAAAGAACAAGGAG
TGCTCCAAGTGTGATCGAACATAGCAGTCCACAAAAGGTGTGTTGACCAC
TATAGTAGTAGTAGTAGTAGTATCCGGTATTTTGATTAAACTGCTGGCTA
GTCGTCACACCCCTCTTCCATGCAGCTCTGTCCAGGGGGTTCACGCTGGT
CAGGCCGCACACCTTCATGTCCTTCCTGACACACTCCATCCACGATTTCC
TAGGTCTACCTCGACCTCTGCTGCCTGGCAACTGCATTTTGGTGATGGTG
TTGATGCAGCCATTGGCACGTTCCACATGTCCATACCACCGGAGTCGGCG
AGACCGCAGCACAGATGCAATGTCCACAAGACCAAGTTTGGCGTGTAGAG
TTTCTGAGGGTGTTCATCCTGAGGTTTGGCACCACAGATCCATCTAATCA
TAGCTCGGTCGTTGCGACGCAAGCGCTGCAGATCCAAGGCAGTAGGGGCC
CATGATTCACTCCCATGGAGCATGGCTGCTCGTACGCAGGAGTCAAACAC
CTTGCCACGGGTTTTGAAGGGTAGGTGCCTGGAAGTAAGGATGGGCAGGA
GCTTCTTGAATCTTCCCCAGCCAACGCTGCATCTGATGCAGATTTTTCCT
TACTTCTCTACTATATTTCCAGCCCCAGATGTGATTGCACAGAACAACCC
TCTTGGCACTCCACAGAAGAAGGGGAGGAACCCAAGTGTTATCATCCTCG
GCACTCCGCAGAAGACCCGGTGTGAGTCTGTCGCAGAGTCGCCTGGCCAG
GAGGGTCTCCTGGTGACGTACTGTCGACCCTCAGACACAGACGACTACCC
CCACCCCCGGTCTGCCTGCCCACACCATCCCTTCAGGTTAGTAATGAAAA
ATCTCATAAGACAGTTCTAGTTCTTAAGTTCTAGTTCTAGTTCTAGTGCT
AGTTTTTGTTCTAGTTCTTGTTCTAACTAGTTCTAGTTTTTGTTTAAGTT
CTAGTTTTTGTTCTAGTTCTAGTTTTTGTTCTATCTAGTTCTAGTCCTAA
TCCTAGTTTTTGTTCTAGTTCTAGCTCTAGTTTTTGTTTAAGTTCTAGTT
TTTGTTTTAGTTCTAGGTCTAGTTTTTGCTCTAGTTCTAGCTCTATAGTT
CTTGTCCTAGTTCTAGTTCTAGCTCTAGTTTTTCTTTGAATTCTAGCTTT
TGTTTAAATTCTAGTTTTTGTTCTAGTTCTAGTCTATCTAGTTCTATCTA
GTTCTAGTCCTAATCCTAGTTTTTGTTCTAGTTCTAGCTCAAGTTTTTGT
TTAAGTTCTAGTTTTTGTTTTAGTTCTAGGTCTAGTTTTTGCTCTAGTTC
TAGCTCTAGTTCTTGTCCTAGTTCTAGTTCTAGTTTTTCTTTGAATTCTA
GCTTTTGTTCTAGTTCTAGTCCTAGTTCTAGTTTTGGTTGTAGTTCTAGC
CCTAGCTCTAGTTCTAGCTCTAGTTTTTGTTCTAGTTCTAGGTCTAGGTC
TGCATGGTCGCATCACCCCTTCAGGTTCGTATGACAAATATCATAAGCGG
GTATAGAGTAGGGTATAGGGTATAATATTTTGTGTAGAGAAATACCTATC
TGGAAAGTAGACAAAATTTACAAAAAGATAGCAGTCTAAATACGGTGGTG
CAGATTTCGAGTACTTAGCTAGGTGTTCATGAATATTCCAATCCTGCCAT
TTTTGTAAACATTTTGAAGATATTAATACAAATATTTCTTATTATCATAG
TTGTACCTGTAATTAGACTGCAGTGTTGTAGAGTAATCCATGCTGAACAC
ATAGATACTAATTTTTTATGGAAAATGTGTACCTTGAAGGCCCACAGGGT
ACTTGAATGTGACAAAATTAAGAAGTCCTTATCATATTTAATATTTTAAT
ATCTGAAGGCTGTTTGTAAAACCAATATGGTTTGAGGATGTCTACTTGAT
ATGGTGATCCACTCTTTGCCGAAAATTTGAGCAAATAACCACTCAACAAC
CTTGTATAATACATAAAAGTCTGGGTATCAGTTAATTAGGCTGGAAGGGT
AAATCATGACTTAATCATTATGAGCAGTCGTCCTGTTTAGACTCAGTGTC
TGGTACTTTGACTTCGCCCAACAAGACAGTACGGCCTGCATGGCAAAGGG
CAGTTTTTGGTGTGTGCGATTCATACTCATGTGCAAAGCAGTGTGGGTAA
AGGGGTGAAGTCTGCCATCTCTGATTGCCATGATGACTTTTACTGATGTT
ATTTTCATTCATAATTTTTTTTTTTTTTTTTCCCTGCAGCATCGCTAGTT
TTGATTATATTGTATGCAGAGGACCCTACCAGCAGAATGCAGCTCACTGC
GACAAGTGCTACTGCTATGTGTGCGACAATCCTGCAAAAGAGGTGAGATT
GCTCCTCAAGTACTGTAGTGTCATGCATGAGATTGGGACTTCATTAACCC
CAACCATAGTAAATTTTCTACTAAAACACCACAGTACAAGAATGGGAATG
TCATGCCAAACAAATTCTCAGTGAGCTAAAAAGGTTTGAGATACATTTGT
AATTACTCTGGAAATCATTTTACCGAGATGTCTTAGATATTCTTTGATTA
TATCTACCGTCACAGAAGTTGTTTTAGGTCAGTTTCCTCTTCCTCTTTGT
TCCAAACTAATAAGGTCAACGACCTGGACCAGACGACTGTCGCCATGGTT
ACTGATAAAGTAGCAGACACCCTGTGGTGTTTGATTACATAATGTAGCAA
GTGGCAGGACAGAGCTGGAGGGGCTTGTCACCATATATATGATTGTGTTT
GAGTAAGAATAAACAGAGCAGTAGTTCGTTAGGTTAGACCATGTGATGAT
AAACATTATGCATTTGTCCGAAAATAATTTCATCAGGTTGGTAGAACAAA
CTTAAGGATATTGGAGGTTCTTTTTTCACAACTGGCGAGTCTTACCTGCT
GATGTTTTGGTGTCTCTCGGACATGGGACGAGGGGGATACAAACTTAGCC
ACGTTTGGGACAGTGTTCTCACCGCAAAAGCGCCACCTACTTCAGCTTTT
TATAGTGTTGAGAAGCATTGCTCCAGTCAGAAGAAGGTGTCTGACAGACA
CCGAAACGTTAGCAGGGGAGAATTACTGGTTGTGAAATAAAAGAACCTCC
AATATCCATAATGCATTTGCTTGTAAATGCTGCCTTTCTAGTCTTATTTT
TTGTCTTCTCTATAGTGCCAGTTCTGGACCAGAGGCCTTGCACACTGTAA
CGCCCACAAATGCCCAGCATGGCAAAGACTACGATCAATATTTAAGACAT
AATGTTGAGTTTAGTATGTAACATTTTGAAATAATAATGATGTTCATATT
ATGTTTATATGCGGTTCTATACAGATATGTCTGGAAATAAACTTGTCAAA
GTGAAATGTTTTCTTTTGAAAATAATTTTATCAGGTTGGTAGAAAATAGG
ATTTGGAGATTAAGCGTGATGTTTATATTTATATTCACCTGGTTAATTGC
AGTATGTTTTACATGTGGCTTGAGAGTTGAAATAAGTTGTTAAGTATGAT
GCAGTCTTTGCAATAATACTTGTCTTATAAATCTGTTTAACATGTTTTGT
GTTGTCCTATACATTTGTCTGAAAATTGACAATAAAGTTGCTGATAAACA
ATGTAGTCATTGAGGACAATTATTCGC Coding sequence (CDS) from alignment at Sc0000011:1274008..1284034- >transcript:BL77209_cuf1 ID=transcript:BL77209_cuf1|Name=transcript:BL77209_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1656bp|location=Sequence derived from alignment at Sc0000011:1274008..1284034- (Branchiostoma lanceolatum)
ATGAACATCTCTCTTCGGACACCTGTGCAGACTGGGTGTAGCGATGATGA
TGATGACGTCATCTTCCTCGGCACTGTGGAAAACGCCAACAACTTGGATA
ACGCCCCAGATGTGATTGCACAGAACAACCCTCTTGGCACTCCACAGAAG
AAGGGGAGGAACCCAAGTGTTATCATCCTCGGCACTCCGCAGAAGACCCG
GTGTGAGTCTGTCGCAGAGTCGCCTGGCCAGGAGGGTCTCCTGGTGACGT
ACTGTCGACCCTCAGACACAGACGACTACCCCCACCCCCGGTCTGCCTGC
CCACACCATCCCTTCAGCATCGCTAGTTTTGATTATATTGTATGCAGAGG
ACCCTACCAGCAGAATGCAGCTCACTGCGACAAGTGCTACTGCTATGTGT
GCGACAATCCTGCAAAAGAGGTGAGATTGCTCCTCAAGTACTGTAGTGTC
ATGCATGAGATTGGGACTTCATTAACCCCAACCATAGTAAATTTTCTACT
AAAACACCACAGTACAAGAATGGGAATGTCATGCCAAACAAATTCTCAGT
GAATGAACATCTCTCTTCGGACACCTGTGCAGACTGGGTGTAGCGATGAT
GATGATGACGTCATCTTCCTCGGCACTGTGGAAAACGCCAACAACTTGGA
TAACGCCCCAGATGTGATTGCACAGAACAACCCTCTTGGCACTCCACAGA
AGAAGGGGAGGAACCCAAGTGTTATCATCCTCGGCACTCCGCAGAAGACC
CGGTGTGAGTCTGTCGCAGAGTCGCCTGGCCAGGAGGGTCTCCTGGTGAC
GTACTGTCGACCCTCAGACACAGACGACTACCCCCACCCCCGGTCTGCCT
GCCCACACCATCCCTTCAGCATCGCTAGTTTTGATTATATTGTATGCAGA
GGACCCTACCAGCAGAATGCAGCTCACTGCGACAAGTGCTACTGCTATGT
GTGCGACAATCCTGCAAAAGAGGTGAGATTGCTCCTCAAGTACTGTAGTG
TCATGCATGAGATTGGGACTTCATTAACCCCAACCATAGTAAATTTTCTA
CTAAAACACCACAGTACAAGAATGGGAATGTCATGCCAAACAAATTCTCA
GTGAATGAACATCTCTCTTCGGACACCTGTGCAGACTGGGTGTAGCGATG
ATGATGATGACGTCATCTTCCTCGGCACTGTGGAAAACGCCAACAACTTG
GATAACGCCCCAGATGTGATTGCACAGAACAACCCTCTTGGCACTCCACA
GAAGAAGGGGAGGAACCCAAGTGTTATCATCCTCGGCACTCCGCAGAAGA
CCCGGTGTGAGTCTGTCGCAGAGTCGCCTGGCCAGGAGGGTCTCCTGGTG
ACGTACTGTCGACCCTCAGACACAGACGACTACCCCCACCCCCGGTCTGC
CTGCCCACACCATCCCTTCAGCATCGCTAGTTTTGATTATATTGTATGCA
GAGGACCCTACCAGCAGAATGCAGCTCACTGCGACAAGTGCTACTGCTAT
GTGTGCGACAATCCTGCAAAAGAGGTGAGATTGCTCCTCAAGTACTGTAG
TGTCATGCATGAGATTGGGACTTCATTAACCCCAACCATAGTAAATTTTC
TACTAAAACACCACAGTACAAGAATGGGAATGTCATGCCAAACAAATTCT
CAGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000011 | genome | Sc0000011:1274008..1284034 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL77209_cuf1 |
| Biotype | protein_coding |
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