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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL77160_cuf0 >transcript:BL77160_cuf0-protein ID=transcript:BL77160_cuf0-protein|Name=transcript:BL77160_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=180bp
MKALLFTAVTVCLLGVAVCCGPPFGPPPPATTSPPATPCPPGVSQVNCFT
DPCASATCDAHPGATCEANYCGGCNAIFFDSNNNEVNCDDPYCPSGGQYI
PNIFCGRGLGRQDCPPTHSCQTHPADRWAVCCPATVGECPDTTGMVGTCV
EECSSDSECAAGQKCCSNGCGHVCMDVTRR Run BLAST on NCBI mRNA from alignment at Sc0000095:132855..139452- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL77160_cuf0 ID=transcript:BL77160_cuf0|Name=transcript:BL77160_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=6598bp|location=Sequence derived from alignment at Sc0000095:132855..139452- (Branchiostoma lanceolatum)
GTTTGCGTGACCGTAGCGCGTTATTCGTCCTGCCTTCCGGTTTGTATAAT
GATTAGTTGCTTCAACCCTAAAACTTATTTGCATAGATCCTAGCTCTTGT
GAAGAAGTCTCTCACGAGTACTCTGCTTACACGAACACGAACATGAAGCT
GCTGCTGTACATTTCACTTTGTGCGGCTGTAGTTAGCTTGGGTAGGCCAC
ACGCAACATCAGCCCAGTTAAACGCATTGGTCTCCATATTGGAATCACAG
GGGCTTCTCCAACAGAGTCTTGTCGACACCATCCTCAATTCGAGCACCGT
GAACTGGACAAATGTCTCCATTCCCGCCCAACCTACCGCCAACATTAGCC
AACAGTGTCAGAAGGATGTTGCACAGTACAAAGAAGACCTGCTCCAAGGA
AAGATGTACGCCATAAGAAGTATGTGAACTACTTAGCTATTGACTTTTCT
GACTCGTTAAGTTAATGCCTGCTTCCCAGAGACTTTGCTGTCAGTTTGTC
TATTTAGGGGGTATGTGTGAAATGTTCTAATGCCCTTAGAAAACGCCTAG
CTGTATAGACCAGGTTGATAAAACATGGACTACTTGTACTGTAACTTATC
CACACTTGGCATTGCTCATAGATAAACTAATTTATAGTTATAAAATAATT
TCATCTGTCATCTTGTTTGTCCATCTGATATCAGAGGATGATAGATTCTA
TGCACCGTTTTAGCTGCTTTAACCTAGGCACATCTTTAGCTTAAGCTTTC
AGGGTCAGGGATCATGGTGGCAGCCAATACCAGTCCCCTCCATAGTTCCT
GTTTTAAGCCCGAAACTAGTTGGGGATTGTCATATGCATTTGCAAATAGT
CGCCAACTAGTTGCATCCCAATAAGAGGGGGGCTTTAGAGTCTTTCCACC
CAGTCTTGCCCCCCTCCCCACCTCCTGCATGGTATCACATGACCCCTTAA
TTACACAGTCGTCCTCATGTATTCAAAGAAGACAAGGGAGGCCAATGGCC
TCTCTTCTCCCCATTCATGAAGTCTGACTCACCAAAAATAATTGGTATAT
TACAAAAGGTTACATTCTTTCAATTACATACGACTTCAAATGCCCTTTGC
TTACTTTGTCCTCGAATAAGCCTGACTTCAAATAAGCTTTGAAAAGACGC
GGTGAAAACATTACAAGGCATTTTTTCTGGGTAAAAGTAATATATTGCAA
AGGTGACGTGACTTTATGAGAATATCATATTGTATTGGGCATCTAATAAA
GTTGGTCTTCGAAGTTTGTTAAAAAGCTGTAAGTTTTTTTTTTTTAATCT
GACGGAAGCTATCCAAATGATATTCTATTGGAATGGCACTAGCAGCTATT
CTTTTTGCAATATCATTAATGTGTTTTCTGTTGTGAGAAACTGTTATGTT
AGCTGATTGCGCAATGATCTATGGGTTCATGAACAGAAGACCGGTCTAAC
GTGTCACAGGATTCGTACACTCCTCGAGGTCGGAACAAACCATTATGACC
ATGTGACTTCAACAGGCCGCGTCTACGGAAACAGTAAGTTAACGCCATTC
TTTTCCCATAAAAAGAATAATTAGATCATCCTTCACACGCAGCGAAAGAT
AAAACCGTGACAAAACTTCATGAAACTGAATTATATAGGCCTGAACAAAA
ACCAACCTGAACAAAGTGGACTCTTCCACTGGTGTGACGCAACCTGTCGT
CTCACGTTTTCATTGTGAGGCAGTGTCAGCATTTGCCTGTCACCGCCCGA
CGTCCGAACAGATTACAAAGATGAAGGCTCTCCTGTTTACAGCTGTAACC
GTGTGTCTGCTCGGGGTGGCTGTGTGCTGTGGCCCACCCTTTGGGCCACC
ACCACCGGCAACAACATCACCTCCAGGTATACTCAACAACGCTGTGTTGT
ACTTTAAAAGTTGACGAAAGTAACAAGTAGTAGTTTTAGTTGTATTGCTC
TACAACGATATAAAGATAGTGTCCTGTCAAAACTGTTATACACAAACAAG
GCGCCCGTTCACACTTGTCGTACGATAGTATATTTAGGGAATTTTAGAAG
TCTTATGAATGTGTCGTACAAAATTAGGCAGTCTAATGGTATTGAATGAT
AGATCCTTCTCGACGGCCTGTTCTGTCAGACCCTCGCTTCTGAGTTCCTT
GGTCACACTAAGCCGACCAAGACCTGCCGACCACTCACAACATTCCCAAG
TTTTTGCTTACTCGGATGACTGTACGTGGTTGGTAACACGTACGTCGAAT
TTGGAGTTAATGCATTGTTAGAGTTTTGGGAAAGAATTCTCGTCCCTGCT
AGCTATTTGTAGACATAACATTCTGTTGTATGTTTGAATTGAGTCATGTT
GTGCGTCATCTTTCGCACAGTTACTGTGGCTTAGTCTGTGGCTTAGTCTG
TGCAACGCTAACTCCACCGTCCGAGGCTGCGAATGGCCCCTTCCCTCGGA
TGTTGACCATGGGCGGGCCACTATAAGCGCGAATTAATCAGGCTACTAGT
ATTTACTTGGGACAACAAAGTTTTAGAACGCAAGCTACCAATGCACATAT
AAGATTGCTAGTTACTTACCAGACTGGTTTGCATGATGTAGGATTGCACA
AGAAGTTCTCACAGTCACTATTCTAGCATGGAAACTGCGTTGTAAGTCTA
GTTAGACTGTCCAATTAATTATCATGTGTTAGAGTTGAGCCATTGTCGTG
AGTTTGTTCTCATTCAAGCATGTCTCATTCAATTAGGAGAGTACGAAAGA
TCTACAATGATACTGGGCAGCTTGCTTTGGGCCTCTATAGTGCGGGCTTC
TTGCCCCACCCATAAAGTCAATTCACCGTTCAGCCAGCAGGCATGTCTTG
TCGGTCATTGACCTCCAGCTATTCATAACATAACTGTGCCTGACCCACCT
TCAGGCTGTCTGTAACACCCCTATTCCACCAGGGCGGCGACCTTACGGCG
ATCGCCCTGCGACGTAAAATTTGACACACTGCTCAACGAATTTCATTGTC
AAAAAAACGAATCTTTTTACGCTTTGTGTGTTTTGTCGTCTTTTCTGTCA
TACTTGTACATCTTGAAGGATATTCCAATAATGAAGTCAAGGGTTGCACA
AATTTAAAGTATTACGCAGCTTGAGCGCAACGTGATCGCCGTCAAGTTGA
ATGGGGGCCTGGCGTATGTCAAAAGGCGTAACTTACATTGTGAGTCATCT
TCAAAAGTAATTACTGCTATAGCTATTCACAGGAACATCCTGTCGATTGT
CAAAAAAATCAAATCTTATGGACAGAAACATCCTGTGAATAACTCCGGCC
TTGCTGTATATGGTGAGTCATCATCTAGTCACATATATTTATCGAAAAGA
TGAGGGGTCCTTCCCGGTGTGAGTCGATCAATCTGTCCGGATATGCAGCT
TGTAGTCTTCAGTACAAACCTGGTGTGTTACTCCATGGTTTACCGCGTAT
GCAATACAAACAAAGACCCGATACACATTTGGAAAATTTTCTAGACGTAC
GTCGGCTTTTCTCCTGGGTGAGAATCGACCCGCGCGTCGAACAACAGGAT
TTTTTTTCGTCGTACGTTACATCCAGGGTGAACGTACGCTGACGGGCCAT
AAAAAAGCCTGTCATACGACGCGCGGAGCCGATTCACATCCAGGAAAAAG
GCGACGGACGTAGAAGACGTACGACGTTGTCGCACGTCATTCTCGTACGT
CCAGAAAATGTTCCCAGTGTGTATCGGGTATGATGTAGCACGATTCTTTT
TGCTTTTACCATGCAGCAACCCCGTGTCCTCCTGGAGTGTCCCAAGTCAA
CTGTTTCACAGACCCGTGTGCTTCTGCCACATGTGACGCACATCCGGGTG
CAACCTGTGAGGCTAACTACTGTGGAGGCTGCAACGCAATCTTCTTCGAC
AGCAATAACAACGAAGTTAACTGCGATGGTACGAGCACATTTGTTTAACT
CAGGGTCTGTAATACGCAATCCCTGGCTTTAAGCATTTAGCTAATAACCG
TAACATTGTACAGTAAAACTTGGCTATATTCAGCAATAACAATGACATAA
ATCAACCAAAAATACATCAAGTCATTCGCTGCTAATCTCATACAACTTAC
AATCACAAAGTAATCGACATTATTTGATTAGTGCTATTCTTAAAAAAAGT
AATGTTCAGTATCATATGTATCTAGTACTGTGTTTGTGAGTTCCGGAAGA
TAGTTGACTGACAAGATTTTAGTATCCCTTTACGCCTTTATTGTGAACAT
CAGAGAATGCTTTGATTTAATTGTAAGATTTCAACCATTCAAATTGTCGG
ACTTTTTTTTTCAACCCACAGACCCCTACTGCCCGTCGGGGGGTCAGTAC
ATACCTAACATCTTCTGTGGGCGGGGTCTTGGTCGCCAGGACTGTCCTCC
AACTCACTCTTGCCAAACTCACCCGGCGGACCGCTGGGCTGTATGCTGTC
CGGGTAAGATCTTTGGACTTGAGGCCATGTTGATTTGATTATATTGATGA
CATCCGCGCGAGAAATCAATTTTCGTCCGTTTCCAAGAAAAATGTTTTCG
GCCATACTGTAAATCGTAAAAAGCAGCTGCAAAATGAGAAAATGCATGCT
GTTAGTTGCAAATGCTTTTTTTAAGTGGATACTAATGTCCTAGAATGCAG
GGTCCATTCCAAAGTCGAAGAAGAAGTTTTGAAAGAACAAAAATGAAGAA
CATATATGCCATACTCTGTGTGTTTAGTTTTGTTCATCCTTCCTGACCAC
GTAGATTTCATAATGAAGGCATTTTTTGTCAGGCTTTTTTTCCATTCGTA
CTCTCCCATCAGTTTTGGACTTCCTCAGGATGCCATCCATTTATCATTAA
ATCAATATGGCCTTAGTGGGAATACCAAGCGGCTCTAATTATAAGATGTA
AACAATATTGTACTGTAGATGGTGTTGTAGGCTGGGTGCCTTTTCCTCCA
AAGGATCAGTTTTTATCTTGACATACAAGTACATTTTCTAAAGAGTTGAC
AGCTATTCTGGACTTTTCGTCAGTGTGCGGTTATATGTAGACCTCTATTC
CATGCAAACATATCGCTACAGGCATTATTTTTTTTCCGTTGAGGAAACAC
TATATCCACACAAAATTATAGAGTTCTTTTGGTTATTCTTTTCCCTCTTC
TTTTCTCTTCCTCTTTTCCCACTGTCTAGCTTTTAGTTGAATCAGTTATT
GAGTCAGCCCCCTTTTATCAATCTAGACGCCGAGCTTCTTGGTCTTTTAA
GGACAAAACACGTACACATTTGATGATATGAAACATATAATAGTAGCTTA
CTGTGTATAGTATACCTTAACACGTCGATGAAAGTTAGACATTCGGGTAA
TAAGATACGCCAAATTACAGCTACTCAAGTAACTGGATGAAATTTAGAAA
CAGTCAGACGTTTCAGACAGCATCTGCTGTCTTTCGTCAGTGACTGGAGA
ACCAGGTTTTATACTATAACGCTGAATTGATATGTTAACGAGGTGAAGAC
AATTTTAGGATGGTTCAGTAGAAGACATGCGGATGCTGTCTGTATCTGTA
TCTATATAGTCGGTATAATTGCCCTTCTGCGTAACACACCAGCTTCGCAA
GCACGTGGCACGGCCACAGCTGATTATATTGCACTGAACGACCAAGATCT
GAAACGTCTGTCGTTTGGTGTAATTAACGAAGACTTTCTGAAACGTCTGG
ATTTTTCAAAATTTTATCCAATCATGTGGAGTGTACCTTAATGTATGTGT
TTTTGACCGTGATTTATAATTGTGTGTTAGCCACAGTTGGGGAATGCCCG
GACACCACTGGAATGGTTGGTACCTGCGTTGAGGAGTGCAGCAGTGACTC
TGAGTGTGCTGCGGGACAGAAGTGCTGCTCTAACGGATGCGGACATGTCT
GTATGGACGTTACCAGGCGCTAGACTACAAAAGACTGTATCTCAGTCATT
TCAATTGTTATATTAACGCTAAATAGCAACTAGACATTGGTATGGCATTA
GCAGCAATAGTTAATCATTCACGGCAATGAAGCCCTTGACTACGTACTAC
AAAAATGCATATAGATATGAGAGATACATGTATAATCCAAAGTAGCCACC
TAAGGTTCAGTCCGGTAACATATGTACACATATATAGCATGCTCTGTTTC
AATGGTTAATGCTCTTAGTAAACAATACACAACATAGGGTTTGACTAAAA
GTAGCGAGCAAACACGGTAAGTAATTTTCACTGGTGATGCTTTATTGTTA
TATATGATCAGGTGTTCCTTATCATCTATATCGAAAGCTATTACTGGGTT
ACAAATATACTGTAGTATGTAATCATCAAACCTCTGCATGGTGCATTAAA
CTAAGGATTGCATTTTCAGACTTGTTCCAGAAACTAAGTTGTCTATGTCT
ATCTCTAATTTCGAATGCCCACATTCTAATTCTAAACTTGTTGGCTTTGA
TTTATTTTTTAAAACAATGGAATATATAGGGCATCCAGCTCATGTCTTAG
AATAGTATTAAATACATCTAAATGTATGTGAAGGAACTGTGTATTCTATG
ATATAAGATATGTCAATAAATGAGCTATAAATCCGTGGTTTTGTGGGC Coding sequence (CDS) from alignment at Sc0000095:132855..139452- >transcript:BL77160_cuf0 ID=transcript:BL77160_cuf0|Name=transcript:BL77160_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2172bp|location=Sequence derived from alignment at Sc0000095:132855..139452- (Branchiostoma lanceolatum)
ATGAAGGCTCTCCTGTTTACAGCTGTAACCGTGTGTCTGCTCGGGGTGGC
TGTGTGCTGTGGCCCACCCTTTGGGCCACCACCACCGGCAACAACATCAC
CTCCAGCAACCCCGTGTCCTCCTGGAGTGTCCCAAGTCAACTGTTTCACA
GACCCGTGTGCTTCTGCCACATGTGACGCACATCCGGGTGCAACCTGTGA
GGCTAACTACTGTGGAGGCTGCAACGCAATCTTCTTCGACAGCAATAACA
ACGAAGTTAACTGCGATGACCCCTACTGCCCGTCGGGGGGTCAGTACATA
CCTAACATCTTCTGTGGGCGGGGTCTTGGTCGCCAGGACTGTCCTCCAAC
TCACTCTTGCCAAACTCACCCGGCGGACCGCTGGGCTGTATGCTGTCCGG
CCACAGTTGGGGAATGCCCGGACACCACTGGAATGGTTGGTACCTGCGTT
GAGGAGTGCAGCAGTGACTCTGAGTGTGCTGCGGGACAGAAGTGCTGCTC
TAACGGATGCGGACATGTCTGTATGGACGTTACCAGGCGCTAGATGAAGG
CTCTCCTGTTTACAGCTGTAACCGTGTGTCTGCTCGGGGTGGCTGTGTGC
TGTGGCCCACCCTTTGGGCCACCACCACCGGCAACAACATCACCTCCAGC
AACCCCGTGTCCTCCTGGAGTGTCCCAAGTCAACTGTTTCACAGACCCGT
GTGCTTCTGCCACATGTGACGCACATCCGGGTGCAACCTGTGAGGCTAAC
TACTGTGGAGGCTGCAACGCAATCTTCTTCGACAGCAATAACAACGAAGT
TAACTGCGATGACCCCTACTGCCCGTCGGGGGGTCAGTACATACCTAACA
TCTTCTGTGGGCGGGGTCTTGGTCGCCAGGACTGTCCTCCAACTCACTCT
TGCCAAACTCACCCGGCGGACCGCTGGGCTGTATGCTGTCCGGCCACAGT
TGGGGAATGCCCGGACACCACTGGAATGGTTGGTACCTGCGTTGAGGAGT
GCAGCAGTGACTCTGAGTGTGCTGCGGGACAGAAGTGCTGCTCTAACGGA
TGCGGACATGTCTGTATGGACGTTACCAGGCGCTAGATGAAGGCTCTCCT
GTTTACAGCTGTAACCGTGTGTCTGCTCGGGGTGGCTGTGTGCTGTGGCC
CACCCTTTGGGCCACCACCACCGGCAACAACATCACCTCCAGCAACCCCG
TGTCCTCCTGGAGTGTCCCAAGTCAACTGTTTCACAGACCCGTGTGCTTC
TGCCACATGTGACGCACATCCGGGTGCAACCTGTGAGGCTAACTACTGTG
GAGGCTGCAACGCAATCTTCTTCGACAGCAATAACAACGAAGTTAACTGC
GATGACCCCTACTGCCCGTCGGGGGGTCAGTACATACCTAACATCTTCTG
TGGGCGGGGTCTTGGTCGCCAGGACTGTCCTCCAACTCACTCTTGCCAAA
CTCACCCGGCGGACCGCTGGGCTGTATGCTGTCCGGCCACAGTTGGGGAA
TGCCCGGACACCACTGGAATGGTTGGTACCTGCGTTGAGGAGTGCAGCAG
TGACTCTGAGTGTGCTGCGGGACAGAAGTGCTGCTCTAACGGATGCGGAC
ATGTCTGTATGGACGTTACCAGGCGCTAGATGAAGGCTCTCCTGTTTACA
GCTGTAACCGTGTGTCTGCTCGGGGTGGCTGTGTGCTGTGGCCCACCCTT
TGGGCCACCACCACCGGCAACAACATCACCTCCAGCAACCCCGTGTCCTC
CTGGAGTGTCCCAAGTCAACTGTTTCACAGACCCGTGTGCTTCTGCCACA
TGTGACGCACATCCGGGTGCAACCTGTGAGGCTAACTACTGTGGAGGCTG
CAACGCAATCTTCTTCGACAGCAATAACAACGAAGTTAACTGCGATGACC
CCTACTGCCCGTCGGGGGGTCAGTACATACCTAACATCTTCTGTGGGCGG
GGTCTTGGTCGCCAGGACTGTCCTCCAACTCACTCTTGCCAAACTCACCC
GGCGGACCGCTGGGCTGTATGCTGTCCGGCCACAGTTGGGGAATGCCCGG
ACACCACTGGAATGGTTGGTACCTGCGTTGAGGAGTGCAGCAGTGACTCT
GAGTGTGCTGCGGGACAGAAGTGCTGCTCTAACGGATGCGGACATGTCTG
TATGGACGTTACCAGGCGCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000095 | genome | Sc0000095:132855..139452 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL77160_cuf0 |
| Biotype | protein_coding |
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