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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL77085_cuf1 >transcript:BL77085_cuf1-protein ID=transcript:BL77085_cuf1-protein|Name=transcript:BL77085_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=168bp
MTVILFSTVIYYAEKGVPNGRFTSIPQTSWYVVVTMTTLGYGEIVANTVF
GKIVTAVCCVSSVILLTLPVTVIVSNFNNLYRPDKLKDDSPPRKNPPPLA
PKELEIFHAQHRHLLTCIEKSTGHNFTTLRFPYIETEHWEGCGHLHGHGH
SHGLRHLTHRDSHSSSHL Run BLAST on NCBI mRNA from alignment at Sc0000228:251893..256044+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL77085_cuf1 ID=transcript:BL77085_cuf1|Name=transcript:BL77085_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4152bp|location=Sequence derived from alignment at Sc0000228:251893..256044+ (Branchiostoma lanceolatum)
GTGATGTACAGTGGTCACATAGAAGGTCATTTGGCTATGGGACGGACTCC
AGTAAAAGTTCGTTTTAGCACGTATGTGATCGTAAACACACTACTGAAAC
GCATTGCAGCGCAGATAAAGGTATCTTTCATGTCCTTTCACAACTATATA
AAGTTACAAGCCGTGTTATAGATAATTCCAAGAAAAAGAAGTTTGCAGTT
CGTTGCTTTCTTCAATAGCTATATCCCTCAGTCATAACAATCTCAAACAT
ATATGCTAAATATGTTTCCGTTTATAGTTTGTCTATTGGTTCAAGATATA
ACATAAAAGACTGTTAGTCACTGGCCGTTTCATCCTCTTGTGTCCTAATG
GTTTTGAGAGCGTCGTGACTTTATTACCTTTCATAGGAGCCCTTAAGTGT
TAGAACGATTTGCTTTATATCACCCTCGAGCCAAATTCAATACTGCGCTT
GCAATGTAATGCCGTCCATTCAAAGTACCAAATCCCGCGTTCACTCGTCA
ACTTATTCTACGGTCTCATTTCCAGTTCGGGACCCGGCCGGGCTGTTTGC
AAAATTAAAAAATAAAAAGATGCGTAACAAGAAAATACACGATTTATGTT
TCGGATTTTTTTAACGTTTTGTGTCTTTTGTTGTCTTTTATATCATAATA
ATCGTTCCCATCGTTCTGTCGTGGGGTCGTGTGGCGTAACGGCAGAGTGT
TCGACTCAGAACCAAAAGGTCCCGAGTTCGAATCTCCCTGACGCCACCGA
TGTTGTGCCCTTGGGAAAGGCACTTTACACGACTTTCCTCACTTCGCCCA
GGTGTCTAAAAGAATGGGTATGTTGTTATCTGTACGTGGCACTGTTAATA
TAAGTTATAAAAAAACTTGAGTGCAGTCCCCCGTCGTCCTTGTTCTGTCA
AAAACCGAACCGAAGTAACAAAAAAAAATCGTTCCCATAAGCTGCCCGAC
CGGGCCCCGCCTTGGAAATGCATTAAATGCGAATAGTGTTGACTTCTTTG
ATAGAAATTCAATGGTACTATTCTATCTGACTTGCATGTTTATCCTGTTG
AGACCTGGCGTATCTGATTTGCTTAGCGCTTTTCTATTTGCCTATTTGTG
GAGGGGATCTCTTATCAACACGTAACCTCGTCGGGTAACTGATAGATAAT
AACATCATTAGCCGCACAAAGTGCAAACTCACGTATAGATGTAGGAACCA
ATCTCATCATCTAGACTTTCAATTCTCTGCTGAATTTGTTTCCACGCTTG
CTATACCATTGCGTGCACTTAACTACCTCACATGCATCCCATCATAGGGG
CGTGCAGACGCGTGGTCCGGAATACCATAGCTGCCTGGGCTCCATCGATC
CGAGCTGGGCCGTACGATACAACAAACTCCCGCCGTGCGGATCCGGACGG
CCGCTGAGCTGACGCCCCGGCCGCCCTTGCTGCGATGGTTTGCCAAACAA
CCCGCGGAGGACTGACAGAGGCGGAGGAGAAGTGATAAATCTACCCCGTC
TCGGTCCGTAGCGTTTTCCCGATATACGACCATCATGAGGAGGAGCCTGT
CGGGAAACGGGCCAATAAGGCGGCCTGACGCAACTGGTGAACAGAATCAC
TCGCCTACATTAAACAGGAGGAGGGGGAAGCCTACACCAAGACTGGCACT
CAATGACCGTCTTCTGGGAGGGTCGGTCGATCTGGAAGTCAGTCTGGATT
CAGTCAGACGAAACGCAGCCATGACTACCAAGACATCCGTCATTCAAAGG
AGTGCTACTTTTGATTCCGNGGCGTCTTCGTCACTCTAAGGGTTTTCCGG
GTGTTTCGGGTCTTCAAACTCTCGCGTTCGTCAACCAACCTGAAGCTGCT
AGGACTCACATTGAAAAGTTGTCTCCGAGATCTGAGTTTCCTGCTATTTG
CCTTGGCAATGACTGTAATCTTGTTTTCCACGGTGATCTACTACGCGGAG
AAGGGAGTACCCAACGGAAGGTTTACATCCATCCCTCAGACCTCATGGTA
CGTGGTAGTTACTATGACTACGTTAGGGTATGGGGAAATAGTGGCGAATA
CTGTGTTCGGCAAGATTGTGACGGCGGTATGTTGCGTGAGCTCCGTCATT
CTCTTAACACTTCCCGTCACGGTTATCGTTTCGAACTTCAACAACTTGTA
CAGGCCAGACAAACTGAAAGATGACAGCCCCCCGAGGAAAAATCCTCCGC
CGCTGGCCCCGAAAGAACTGGAAATATTCCACGCCCAACATCGTCATCTT
TTGACTTGTATTGAGAAGAGCACGGGGCACAATTTTACCACTTTGCGGTT
TCCCTATATTGAAACTGAGCACTGGGAAGGGTGTGGCCATCTTCACGGGC
ATGGGCACAGCCATGGACTTAGACACCTCACGCACAGGGATTCTCACTCA
AGTTCTCATTTGTAACATGGATGGAGCCACACGTAGAACTCTTATGAAAT
TCACTTATCTAAAGGCCACAGTTCATGACACTGATGTAGGGACACAACAG
ATATACGTCGGGGAAACATGTCTGATATTTGCTGTCCATGTGAAAATCTG
TCAGTAGAACATTTGGGGCAAAATTATGCAGGCTCGTAACCAGCCTGTCA
ACCTGGATAGTCTACAACGTTTCCATGTCTGTCCTGCTGAGAATAATATG
TACTGGTTAAACAGTAGTAGTCAGTCACTATGAAGTGATTATACACGAGA
ACAGACCCACGAAATTATGTGTTTGGGGCTGTACGTGACTTCCTATATGC
CTGACTGTAGACAGTAAACTCACTTCTCACCGTAAAAAGTACAATGTGCG
GCAGCATCAAGTTGGTTGATCATTGGTTTGCACCTCACGTTGCAAACACT
CCAAGAGTCAAACAAGTGTAAGTAGTGAGATGTCACATCCAATGCCGAGC
AATATATCCGTATTCCTTCACAAACCTTTATATATGTGTATGTGTGTGAA
GAACATATCCACAATAGTTACTTTGTAGCTTGTTAGAACAATCGCTGCAC
ACGTCATTTAATCGTGTCGAGTGTAATGGAAGCGTGGTGTAGAAATATAC
GAGCACTCTGGGTGTAATGGAAGCCGGCTATGTGATTTATTTCTTCGCGC
CAACTCGTTACCGCCTCACGCCTGTTCAGATTACTAGTGTACGAGCACAG
AGCGGCGCAAGCGCGCTCGTTAGTAGTTTCCTTTTCGCCAGCTCTGTGAT
ATGACGCTCCTAAATTGGCATTCCACTCGACGAGGCAGCACATCTATAAA
CGTCAGGTTCCATACAGCCAAACAGCAGAGAGCTGCTGTAAGGTTAACTG
AAGCAGTGAAGGGTGCTATTCGTACCGTGCACATTTGAGAGGGGATCATT
TGAATGTGACAACCTTAATGTAGTATGATTTACTTGGGAGTATACTGCCA
AGTGACCTTAGAGAATTTTGTAAATCTAGAACCTTTCTAGAATAGAGAAA
TGATTAAGATTTGGCGACAGTTTGTACTTGTAATGATTTTATCAATATTA
AGACAAATCTGTACTATATATGTGTCGCACGTATCGTTTTAAAAATGACG
ACAGAATGACAGATATAAGTAACACCGTACCGAATCAAAGCTGCTCAGAT
GATATACGTCTTTATCCTGCACAGATGATAAAGATGCTAAAATCACAGAC
CCTTTTTCAGTACCAGGATGTTTTGTTGCACGAGCGTGTGATGCAAACAG
GAGAAACTTCCCTGTACTCAGTATCCCTTTTATTTGTCAATAGAATATCA
AAATGCTACCTGACATATTGCCAGGCTATATACAGTACGGAATAGGCTTA
TGGCATTGCAATGAGCCATGTGGTTGTTTTTTTATGATAAGTACAGCATG
AATATTACATTTGAGAAATGTATGATGATATCAAAAACAGAAAGAGACAA
ACACTATTGATACCTATTTTTCGGAAACCAATTAGTTGTTGAAGAAGCGA
TTTGTCAGGTTTTGGTACTTTTCTGCTGTCCAATGTTACTTGTAACTGTC
AATGTAGCCTCCGAGAGATATTACCCTTGTGATTACCACTATATACATAT
GTATGAGATATGCCATGAGTACAAGTATTGTATACTGCCTCTTTGGATGT
AAGAGGAATTGTTCACAAATCTGAATACACTTCATTTACATGTAAGTCGG
GC Coding sequence (CDS) from alignment at Sc0000228:251893..256044+ >transcript:BL77085_cuf1 ID=transcript:BL77085_cuf1|Name=transcript:BL77085_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=507bp|location=Sequence derived from alignment at Sc0000228:251893..256044+ (Branchiostoma lanceolatum)
ATGACTGTAATCTTGTTTTCCACGGTGATCTACTACGCGGAGAAGGGAGT
ACCCAACGGAAGGTTTACATCCATCCCTCAGACCTCATGGTACGTGGTAG
TTACTATGACTACGTTAGGGTATGGGGAAATAGTGGCGAATACTGTGTTC
GGCAAGATTGTGACGGCGGTATGTTGCGTGAGCTCCGTCATTCTCTTAAC
ACTTCCCGTCACGGTTATCGTTTCGAACTTCAACAACTTGTACAGGCCAG
ACAAACTGAAAGATGACAGCCCCCCGAGGAAAAATCCTCCGCCGCTGGCC
CCGAAAGAACTGGAAATATTCCACGCCCAACATCGTCATCTTTTGACTTG
TATTGAGAAGAGCACGGGGCACAATTTTACCACTTTGCGGTTTCCCTATA
TTGAAACTGAGCACTGGGAAGGGTGTGGCCATCTTCACGGGCATGGGCAC
AGCCATGGACTTAGACACCTCACGCACAGGGATTCTCACTCAAGTTCTCA
TTTGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000228 | genome | Sc0000228:251893..256044 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL77085_cuf1 |
| Biotype | protein_coding |
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