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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL77054_cuf0 >transcript:BL77054_cuf0-protein ID=transcript:BL77054_cuf0-protein|Name=transcript:BL77054_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=557bp
LTKTSPLDIAHVLNKYFGTVAETLAQNINKGLSHFSPLQFVRHYQSRFTL
KPVSVDFVTQELLALKSDKATGLDQLNNRLLKSAAQEIAPSLTTIINASI
QTSEFPEDWKKARLSPIHKAGDRDAPNNYRPISILPAVSKILERAVHTQL
YDYMTTNNILSEVQSGFRPGHSTQTAVHLLTERWYKAMNEGELTGAVFID
LSKAFDTLDHTILLQKMSRYGIQGPALDWFQSYLTGRKHCTSINGATSEF
HQVKYGVPQGSILGPLLFIIYVNDMPECLQSCDISMYADDTVIYYSNKDF
TNIENVLQNDLQRLSQWFAANSLSMNGGKCKSMLIGTNRRLASCNIPNLA
VNGVNLKTCDKYTYLGVVIDRQLKWKDQAKAVLGKLRRSLFMMKHLNPFI
STSALCTLYNAIFLPHITYACTAWEAAPDQDLQKIQSMQNRAGKLILKAP
HRTPSTEVLSRLSWKDIKETLQYYNAVQTYKALNNKLPPYMRQMFVYCRD
QSTRTTRQSTSSQLVVPKPKREIFRRSVAYRGPNVWNSLPPDTRTAPNLT
SFKRLLK Run BLAST on NCBI mRNA from alignment at Sc0000161:73936..75865- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL77054_cuf0 ID=transcript:BL77054_cuf0|Name=transcript:BL77054_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1930bp|location=Sequence derived from alignment at Sc0000161:73936..75865- (Branchiostoma lanceolatum)
CACTCACAAAAACCTCACCACTGGACATCGCCCATGTACTCAACAAATAC
TTCGGAACAGTCGCTGAAACGCTAGCCCAAAACATCAACAAAGGGTTGTC
ACATTTCAGTCCTCTACAGTTTGTCAGACACTACCAGTCCCGCTTTACCC
TCAAACCTGTGTCAGTGGACTTTGTGACCCAAGAACTCTTAGCTCTGAAG
TCTGACAAAGCCACTGGACTTGACCAGCTCAACAACAGACTTTTAAAGTC
AGCCGCCCAAGAAATAGCACCTTCCCTGACAACCATCATAAACGCGTCGA
TACAGACAAGTGAATTCCCAGAGGATTGGAAAAAGGCAAGGCTGTCACCC
ATACACAAGGCTGGGGACAGAGACGCCCCCAACAACTACAGACCCATCAG
CATCCTGCCTGCCGTCTCCAAAATCCTTGAAAGAGCCGTGCACACACAAC
TCTACGACTACATGACAACCAACAACATTCTATCAGAAGTTCAATCTGGC
TTCAGACCCGGACACTCAACACAAACAGCTGTACACTTACTAACTGAGAG
ATGGTACAAGGCCATGAACGAGGGTGAACTGACGGGAGCAGTGTTCATTG
ACCTGTCAAAGGCATTCGACACACTGGATCACACCATCCTCCTCCAGAAG
ATGTCCAGATACGGCATACAGGGACCCGCCCTTGACTGGTTCCAATCATA
CCTCACTGGAAGGAAACACTGCACATCCATCAACGGAGCAACCTCTGAGT
TTCACCAAGTAAAATACGGAGTACCCCAGGGATCCATACTAGGACCCCTG
CTATTCATCATCTACGTCAACGATATGCCAGAATGCCTTCAGTCTTGTGA
CATTTCAATGTATGCAGATGATACTGTTATCTACTATAGCAACAAGGACT
TCACCAACATTGAGAACGTACTTCAAAACGACCTTCAACGGCTGTCGCAA
TGGTTTGCTGCGAACTCGTTATCAATGAATGGTGGTAAATGTAAAAGTAT
GCTCATTGGTACAAACAGAAGACTGGCAAGCTGCAACATTCCAAACTTGG
CTGTCAACGGCGTCAACCTAAAAACATGCGACAAATACACGTACCTTGGT
GTAGTTATCGATCGTCAGCTCAAGTGGAAAGACCAGGCAAAGGCTGTACT
AGGAAAACTGCGGCGGTCATTATTCATGATGAAACACTTAAACCCTTTCA
TCTCAACCTCAGCACTCTGTACCCTGTATAATGCCATCTTCCTACCACAC
ATCACATACGCTTGCACAGCATGGGAAGCTGCCCCCGACCAGGATCTACA
GAAAATTCAAAGTATGCAGAATCGGGCTGGAAAACTGATACTAAAGGCCC
CACACAGGACACCATCAACCGAAGTGCTCTCTCGGCTGAGCTGGAAAGAC
ATTAAAGAAACACTCCAATACTACAATGCCGTACAAACCTACAAAGCCCT
AAACAACAAACTGCCACCCTACATGCGCCAGATGTTTGTGTACTGTAGAG
ACCAGAGTACTCGTACAACCAGACAAAGCACAAGCAGTCAGCTGGTTGTC
CCCAAACCCAAGCGAGAGATCTTCAGAAGATCGGTAGCCTACCGTGGACC
AAATGTCTGGAACAGCCTACCGCCAGACACACGTACGGCTCCGAATCTGA
CTTCCTTCAAGAGACTCTTGAAGTAACGGAAATGAACTAAACGAACGGAC
ACGGACCATGAACCAGCTTTCGCCCTACTTTATGTTGTATGTTGTAGAAA
TTGTATATTGTTGTACCATAAATATGTAATGATATATGTTGATAGAGTTA
TTAGGACTCAAATGACTGTGTATCTCTGTTATATTGTATCTGACCCTTAC
CTCTTCCCTCATGACCTCAATGAAAAGCGGCCTGCGTGCCGATTTGAGCT
TATCATGAATAAACAAAGGTTCAAACAAAC Coding sequence (CDS) from alignment at Sc0000161:73936..75865- >transcript:BL77054_cuf0 ID=transcript:BL77054_cuf0|Name=transcript:BL77054_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1674bp|location=Sequence derived from alignment at Sc0000161:73936..75865- (Branchiostoma lanceolatum)
CTCACAAAAACCTCACCACTGGACATCGCCCATGTACTCAACAAATACTT
CGGAACAGTCGCTGAAACGCTAGCCCAAAACATCAACAAAGGGTTGTCAC
ATTTCAGTCCTCTACAGTTTGTCAGACACTACCAGTCCCGCTTTACCCTC
AAACCTGTGTCAGTGGACTTTGTGACCCAAGAACTCTTAGCTCTGAAGTC
TGACAAAGCCACTGGACTTGACCAGCTCAACAACAGACTTTTAAAGTCAG
CCGCCCAAGAAATAGCACCTTCCCTGACAACCATCATAAACGCGTCGATA
CAGACAAGTGAATTCCCAGAGGATTGGAAAAAGGCAAGGCTGTCACCCAT
ACACAAGGCTGGGGACAGAGACGCCCCCAACAACTACAGACCCATCAGCA
TCCTGCCTGCCGTCTCCAAAATCCTTGAAAGAGCCGTGCACACACAACTC
TACGACTACATGACAACCAACAACATTCTATCAGAAGTTCAATCTGGCTT
CAGACCCGGACACTCAACACAAACAGCTGTACACTTACTAACTGAGAGAT
GGTACAAGGCCATGAACGAGGGTGAACTGACGGGAGCAGTGTTCATTGAC
CTGTCAAAGGCATTCGACACACTGGATCACACCATCCTCCTCCAGAAGAT
GTCCAGATACGGCATACAGGGACCCGCCCTTGACTGGTTCCAATCATACC
TCACTGGAAGGAAACACTGCACATCCATCAACGGAGCAACCTCTGAGTTT
CACCAAGTAAAATACGGAGTACCCCAGGGATCCATACTAGGACCCCTGCT
ATTCATCATCTACGTCAACGATATGCCAGAATGCCTTCAGTCTTGTGACA
TTTCAATGTATGCAGATGATACTGTTATCTACTATAGCAACAAGGACTTC
ACCAACATTGAGAACGTACTTCAAAACGACCTTCAACGGCTGTCGCAATG
GTTTGCTGCGAACTCGTTATCAATGAATGGTGGTAAATGTAAAAGTATGC
TCATTGGTACAAACAGAAGACTGGCAAGCTGCAACATTCCAAACTTGGCT
GTCAACGGCGTCAACCTAAAAACATGCGACAAATACACGTACCTTGGTGT
AGTTATCGATCGTCAGCTCAAGTGGAAAGACCAGGCAAAGGCTGTACTAG
GAAAACTGCGGCGGTCATTATTCATGATGAAACACTTAAACCCTTTCATC
TCAACCTCAGCACTCTGTACCCTGTATAATGCCATCTTCCTACCACACAT
CACATACGCTTGCACAGCATGGGAAGCTGCCCCCGACCAGGATCTACAGA
AAATTCAAAGTATGCAGAATCGGGCTGGAAAACTGATACTAAAGGCCCCA
CACAGGACACCATCAACCGAAGTGCTCTCTCGGCTGAGCTGGAAAGACAT
TAAAGAAACACTCCAATACTACAATGCCGTACAAACCTACAAAGCCCTAA
ACAACAAACTGCCACCCTACATGCGCCAGATGTTTGTGTACTGTAGAGAC
CAGAGTACTCGTACAACCAGACAAAGCACAAGCAGTCAGCTGGTTGTCCC
CAAACCCAAGCGAGAGATCTTCAGAAGATCGGTAGCCTACCGTGGACCAA
ATGTCTGGAACAGCCTACCGCCAGACACACGTACGGCTCCGAATCTGACT
TCCTTCAAGAGACTCTTGAAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000161 | genome | Sc0000161:73936..75865 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL77054_cuf0 |
| Biotype | protein_coding |
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