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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL77042_cuf0 >transcript:BL77042_cuf0-protein ID=transcript:BL77042_cuf0-protein|Name=transcript:BL77042_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=222bp
YDNNLHCNWTIQANTSVTLTFMDFDVYFDRGCSGDHVDVFEGDENGRRIG
RYCGDITVRDHYPVRKVVSNSNTTTVVFTSDAWSAGRGFKASYATFDPNL
QQDENVTCGRALTGSSGNFTSPNYPDSYGDMADCIWTITVNDTRSVSLTF
DFFDLEKEPDCSFDAVEVYQGTPEAGRELGTFCGNSTTDEKYPRGQIRSN
LHVMTLTFRSDLSMTRPGFHVT Run BLAST on NCBI mRNA from alignment at Sc0000002:1417111..1419174- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL77042_cuf0 ID=transcript:BL77042_cuf0|Name=transcript:BL77042_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2064bp|location=Sequence derived from alignment at Sc0000002:1417111..1419174- (Branchiostoma lanceolatum)
CTACGACAACAACCTCCACTGTAACTGGACTATCCAGGCCAACACCTCCG
TAACTCTAACCTTCATGGACTTCGATGTCTACTTCGACCGCGGCTGCAGC
GGGGACCACGTTGACGTGTTTGAGGGTGATGAGAATGGCAGACGCATAGG
TGAGAGTGATACTTCATAAAAAACATTCCTATGAACAGTGTTGTTATTGT
TCGCCTTGTAGTGCCAAGTGGCACATAGGTCAGCGAGTTTCCTTGCTGTT
TCAGTATATTTTTACAGGGAGGAGTTGCTAGACCTTCCCCTTTAACGTGC
TTGAGGCACGTATTCAAACATGACACACCATTTTACGTCCTTTCCGAAAG
ACGGGGGCAGCCCCAACCGAGATATCCAATCCCAGGCTTTGAACCAAGGC
GCATACGCACTCTCCAAGCAGAGGTTGGTGGGAGAAGATCTTGACCTTTT
TATCACATGCCCCGTTTTTTTCCATGCATGGATGGGGGAACGGACATAAA
ACGGGGCATATGATAAAAAGGTCAAGATTTTCTCCCACCAGCCTCTGCTT
GGAGAGTACCCAGAAGCTTAACTGTGAGGTTGAGTTGAGTTACAAAGAAA
CCCTCTTTAAACATTACTTCACCAAAACTCTAATCAATTTTTTATCAATT
TGATATTGGTTACTTACTTTCTCATTTACGTTTTTGTTTATTTGTTTGTT
TGTCTGCTTAGGTCGGTACTGTGGTGACATTACTGTGAGAGACCACTATC
CTGTAAGAAAAGTCGTGTCAAATAGCAACACAACAACAGTGGTGTTTACC
AGTGACGCGTGGTCGGCTGGGCGGGGCTTCAAAGCGTCATATGCCACCTT
TGACCCCAACCTCCAACAAGGTCATTGTACAATTACTATAGATGTTCTCA
TACTAGCGGCATTCACGTTTGTAACTTCTCATCAGAAAGATATTAAGTCG
TTTTACTTAAGATAGTAAACTTGACATTGTATGAGGTAGTATGATGTTGC
AATAAATGAGCTTTCATGTTAATGTAATATGATTTTGTTGACGTTGAAAA
TATTTTCCTCTCGTTGCAACTTGACTACATAAATTTACATAAACTGTGTT
ACCATTTAGCTCTAAGGCCCCTTTTTTACATTAGACAGCGATCTCTCCAT
GACCCAAAACTGGATTTGTGTAACGTTGGAAAAGTATGAGTTTTAAAAAA
TATTTTATAAAACACAGATCATGTCATTTTCTATCAATGAGCGACCTGTC
GAATCTTTGGTCGTCAAGTGGTCGCTCATCGTTCGCAACCTCTGTGTGGC
AAAGAAGGCATTTATGATGATGATGATTGATAACTGTTATTGCAGATGAG
AACGTGACCTGTGGCCGTGCGCTGACCGGGTCATCCGGCAACTTCACCTC
ACCAAACTACCCGGACAGCTACGGAGACATGGCCGACTGTATCTGGACCA
TCACAGTCAACGACACTCGATCCGTGTCCTTGACCTTCGACTTCTTTGAC
CTTGAAAAGGAGCCAGACTGTAGCTTTGACGCGGTAGAAGTCTACCAGGG
AACTCCAGAGGCTGGACGTGAACTTGGTAAACTTGAGTGTACCGTTGTAA
CAAATGACAAGATGAATATACTAGTAATGATAAACACTATTGCTAACCAA
ATCTGTTTGTCAAGCGGCAGTATCTTTCGCTATTTCTCAACAGCAAGCTA
GTAAGTCGCTGTATATAAAAACTTAAAACATGATACTCATGTGATATGAC
TTTGCTGACGTTAGAAATCATTTCTTTAAATCACTATAGCTGTGGATGCA
GCAACAACTGCACTTTATTGAACAGTTTGGGGGAACAGAATTCAGATGCA
ATGCGATACTGACCCCATTCATATTTTGTATTCGTACCAAAATCCATATT
ATTTGACAATGATTGAGATGTATATCATAACTCAGGTACGTTTTGCGGCA
ACTCCACCACCGATGAAAAGTATCCCAGGGGTCAGATCAGGTCCAACCTT
CACGTGATGACGCTGACCTTTCGCAGTGACCTGTCCATGACTCGACCAGG
ATTCCATGTTACTT Coding sequence (CDS) from alignment at Sc0000002:1417111..1419174- >transcript:BL77042_cuf0 ID=transcript:BL77042_cuf0|Name=transcript:BL77042_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2664bp|location=Sequence derived from alignment at Sc0000002:1417111..1419174- (Branchiostoma lanceolatum)
TACGACAACAACCTCCACTGTAACTGGACTATCCAGGCCAACACCTCCGT
AACTCTAACCTTCATGGACTTCGATGTCTACTTCGACCGCGGCTGCAGCG
GGGACCACGTTGACGTGTTTGAGGGTGATGAGAATGGCAGACGCATAGGT
CGGTACTGTGGTGACATTACTGTGAGAGACCACTATCCTGTAAGAAAAGT
CGTGTCAAATAGCAACACAACAACAGTGGTGTTTACCAGTGACGCGTGGT
CGGCTGGGCGGGGCTTCAAAGCGTCATATGCCACCTTTGACCCCAACCTC
CAACAAGATGAGAACGTGACCTGTGGCCGTGCGCTGACCGGGTCATCCGG
CAACTTCACCTCACCAAACTACCCGGACAGCTACGGAGACATGGCCGACT
GTATCTGGACCATCACAGTCAACGACACTCGATCCGTGTCCTTGACCTTC
GACTTCTTTGACCTTGAAAAGGAGCCAGACTGTAGCTTTGACGCGGTAGA
AGTCTACCAGGGAACTCCAGAGGCTGGACGTGAACTTGGTACGTTTTGCG
GCAACTCCACCACCGATGAAAAGTATCCCAGGGGTCAGATCAGGTCCAAC
CTTCACGTGATGACGCTGACCTTTCGCAGTGACCTGTCCATGACTCGACC
AGGATTCCATGTTACTTACGACAACAACCTCCACTGTAACTGGACTATCC
AGGCCAACACCTCCGTAACTCTAACCTTCATGGACTTCGATGTCTACTTC
GACCGCGGCTGCAGCGGGGACCACGTTGACGTGTTTGAGGGTGATGAGAA
TGGCAGACGCATAGGTCGGTACTGTGGTGACATTACTGTGAGAGACCACT
ATCCTGTAAGAAAAGTCGTGTCAAATAGCAACACAACAACAGTGGTGTTT
ACCAGTGACGCGTGGTCGGCTGGGCGGGGCTTCAAAGCGTCATATGCCAC
CTTTGACCCCAACCTCCAACAAGATGAGAACGTGACCTGTGGCCGTGCGC
TGACCGGGTCATCCGGCAACTTCACCTCACCAAACTACCCGGACAGCTAC
GGAGACATGGCCGACTGTATCTGGACCATCACAGTCAACGACACTCGATC
CGTGTCCTTGACCTTCGACTTCTTTGACCTTGAAAAGGAGCCAGACTGTA
GCTTTGACGCGGTAGAAGTCTACCAGGGAACTCCAGAGGCTGGACGTGAA
CTTGGTACGTTTTGCGGCAACTCCACCACCGATGAAAAGTATCCCAGGGG
TCAGATCAGGTCCAACCTTCACGTGATGACGCTGACCTTTCGCAGTGACC
TGTCCATGACTCGACCAGGATTCCATGTTACTTACGACAACAACCTCCAC
TGTAACTGGACTATCCAGGCCAACACCTCCGTAACTCTAACCTTCATGGA
CTTCGATGTCTACTTCGACCGCGGCTGCAGCGGGGACCACGTTGACGTGT
TTGAGGGTGATGAGAATGGCAGACGCATAGGTCGGTACTGTGGTGACATT
ACTGTGAGAGACCACTATCCTGTAAGAAAAGTCGTGTCAAATAGCAACAC
AACAACAGTGGTGTTTACCAGTGACGCGTGGTCGGCTGGGCGGGGCTTCA
AAGCGTCATATGCCACCTTTGACCCCAACCTCCAACAAGATGAGAACGTG
ACCTGTGGCCGTGCGCTGACCGGGTCATCCGGCAACTTCACCTCACCAAA
CTACCCGGACAGCTACGGAGACATGGCCGACTGTATCTGGACCATCACAG
TCAACGACACTCGATCCGTGTCCTTGACCTTCGACTTCTTTGACCTTGAA
AAGGAGCCAGACTGTAGCTTTGACGCGGTAGAAGTCTACCAGGGAACTCC
AGAGGCTGGACGTGAACTTGGTACGTTTTGCGGCAACTCCACCACCGATG
AAAAGTATCCCAGGGGTCAGATCAGGTCCAACCTTCACGTGATGACGCTG
ACCTTTCGCAGTGACCTGTCCATGACTCGACCAGGATTCCATGTTACTTA
CGACAACAACCTCCACTGTAACTGGACTATCCAGGCCAACACCTCCGTAA
CTCTAACCTTCATGGACTTCGATGTCTACTTCGACCGCGGCTGCAGCGGG
GACCACGTTGACGTGTTTGAGGGTGATGAGAATGGCAGACGCATAGGTCG
GTACTGTGGTGACATTACTGTGAGAGACCACTATCCTGTAAGAAAAGTCG
TGTCAAATAGCAACACAACAACAGTGGTGTTTACCAGTGACGCGTGGTCG
GCTGGGCGGGGCTTCAAAGCGTCATATGCCACCTTTGACCCCAACCTCCA
ACAAGATGAGAACGTGACCTGTGGCCGTGCGCTGACCGGGTCATCCGGCA
ACTTCACCTCACCAAACTACCCGGACAGCTACGGAGACATGGCCGACTGT
ATCTGGACCATCACAGTCAACGACACTCGATCCGTGTCCTTGACCTTCGA
CTTCTTTGACCTTGAAAAGGAGCCAGACTGTAGCTTTGACGCGGTAGAAG
TCTACCAGGGAACTCCAGAGGCTGGACGTGAACTTGGTACGTTTTGCGGC
AACTCCACCACCGATGAAAAGTATCCCAGGGGTCAGATCAGGTCCAACCT
TCACGTGATGACGCTGACCTTTCGCAGTGACCTGTCCATGACTCGACCAG
GATTCCATGTTACT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000002 | genome | Sc0000002:1417111..1419174 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL77042_cuf0 |
| Biotype | protein_coding |
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