transcript:BL76871_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL76871_cuf0
Unique Nametranscript:BL76871_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL76871_cuf0

>transcript:BL76871_cuf0-protein ID=transcript:BL76871_cuf0-protein|Name=transcript:BL76871_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=194bp
KDEQGDTALHWAAYRGHVKVIKLLLSKGLDSNAKGYYGRTAVHRAAEKGQ
AQTLEVLLEAGGSSNVTNEDGETPLHIALLRNPGITQLLLENGGDPSMKS
EDGGTALHLAAWSGSADTLKLVLETCKIDVDEKDSAGCTALHVASERGHY
DSVKMLLDHGSSASAIDNNNQTPLDKAQLKGHDEVSALLKSTVA
Run BLAST on NCBI

mRNA from alignment at Sc0000060:696369..697098-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL76871_cuf0 ID=transcript:BL76871_cuf0|Name=transcript:BL76871_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=730bp|location=Sequence derived from alignment at Sc0000060:696369..697098- (Branchiostoma lanceolatum)
CAAAAGATGAACAGGGAGATACAGCACTCCACTGGGCTGCATATCGCGGG CACGTTAAGGTGATAAAGCTATTACTCAGCAAAGGCCTGGACAGTAATGC AAAGGGTTATTATGGTAGAACAGCTGTCCATCGTGCTGCAGAAAAAGGAC AAGCACAGACACTTGAGGTGCTTCTAGAGGCGGGAGGGTCATCCAATGTA ACTAACGAAGATGGGGAAACACCGCTTCATATTGCACTGCTCAGAAACCC TGGCATTACTCAGCTTCTTCTTGAGAACGGTGGAGATCCCAGTATGAAGT CAGAAGATGGGGGGACTGCACTCCACCTTGCAGCGTGGAGTGGTAGCGCG GACACACTAAAGTTAGTGTTAGAGACTTGTAAGATTGATGTTGATGAGAA AGACTCTGCAGGTTGCACAGCACTCCATGTGGCCTCTGAGCGAGGTCACT ATGACTCAGTAAAGATGCTGTTGGATCATGGATCCTCAGCAAGTGCCATA GACAACAACAATCAAACACCATTGGACAAAGCACAGTTAAAGGGACATGA TGAAGTGTCAGCACTGCTGAAGAGCACAGTTGCTTAGATTTTTTATCCCA GGGGTATTGCTGTACTAAAGTCATAAGGGTCAAGCCAGTTATGTGTTTTT TTCAAAAGGCAGAACCTAGAATGGGGTAATTGTGCTAGCCTAAAATGTAT CCATTTGTCCTTAATCTACATGAAAGTGTG

Coding sequence (CDS) from alignment at Sc0000060:696369..697098-

>transcript:BL76871_cuf0 ID=transcript:BL76871_cuf0|Name=transcript:BL76871_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=585bp|location=Sequence derived from alignment at Sc0000060:696369..697098- (Branchiostoma lanceolatum)
AAAGATGAACAGGGAGATACAGCACTCCACTGGGCTGCATATCGCGGGCA
CGTTAAGGTGATAAAGCTATTACTCAGCAAAGGCCTGGACAGTAATGCAA
AGGGTTATTATGGTAGAACAGCTGTCCATCGTGCTGCAGAAAAAGGACAA
GCACAGACACTTGAGGTGCTTCTAGAGGCGGGAGGGTCATCCAATGTAAC
TAACGAAGATGGGGAAACACCGCTTCATATTGCACTGCTCAGAAACCCTG
GCATTACTCAGCTTCTTCTTGAGAACGGTGGAGATCCCAGTATGAAGTCA
GAAGATGGGGGGACTGCACTCCACCTTGCAGCGTGGAGTGGTAGCGCGGA
CACACTAAAGTTAGTGTTAGAGACTTGTAAGATTGATGTTGATGAGAAAG
ACTCTGCAGGTTGCACAGCACTCCATGTGGCCTCTGAGCGAGGTCACTAT
GACTCAGTAAAGATGCTGTTGGATCATGGATCCTCAGCAAGTGCCATAGA
CAACAACAATCAAACACCATTGGACAAAGCACAGTTAAAGGGACATGATG
AAGTGTCAGCACTGCTGAAGAGCACAGTTGCTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL76871gene:BL76871Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL76871_cuf0-E1BL76871_cuf0-E1-1564476830-244941Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL76871_cuf0transcript:BL76871_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000060genomeSc0000060:696369..697098 -
Properties
Property NameValue
Transcript idBL76871_cuf0
Biotypeprotein_coding