transcript:BL76820_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL76820_cuf0
Unique Nametranscript:BL76820_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL76820_cuf0

>transcript:BL76820_cuf0-protein ID=transcript:BL76820_cuf0-protein|Name=transcript:BL76820_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=180bp
VNECDTDNGGCDHTCTNTVGSYYCTCDAGYTLNVDGHACDDVDECLTNNG
GCGQTCTNTEGSYDCSCSNGYTLNVDGQSCDDDNECLTDNGGCDDTCTNT
MGSYMCSCDNGYVLNDDGHSCDDVDECNMYNGGCGQTCTNTMGSYDCSCD
TGYTLNADGHSCDGRRLLFCIDFAGSIHPL
Run BLAST on NCBI

mRNA from alignment at Sc0000027:2481013..2483810-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL76820_cuf0 ID=transcript:BL76820_cuf0|Name=transcript:BL76820_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2798bp|location=Sequence derived from alignment at Sc0000027:2481013..2483810- (Branchiostoma lanceolatum)
ACGTGAACGAATGCGACACGGACAATGGTGGTTGTGACCACACTTGCACG
AACACAGTGGGGAGTTATTACTGTACATGTGACGCTGGATACACCCTGAA
TGTTGATGGGCATGCATGTGACGGTAGGCGTCTTTTTGTTTTTTCATAGA
TTTTGCAGGCTTCTACAAGAGTGGAAACGTTTTAGAAAATTGCGACAATA
ATCATCATGATAGAAGAATGTGTTGTGTTGGGAAGATAAGACCTTAATAG
TCCGGACGCCTCTTGTAATCTTTGTAGGGAAGATCAATGATGTTTTTTAT
TCAAATGAGGACCCTATTTGCATTATTATAAAAAAAGAGAAACTAAAAAA
AAATCAGTTGTAGCAAGGTTTACATCGCTTGGCGAATGGATTACTAGTAT
AATGTGGACCTTTCGCGGTAGATACCACGTACATGTTCTTAACTTCTTAC
TGAATGTACTGTATAAACTTACGTTTGTGAAGGTTAGACATCCAGGTAAC
CAATATGTAAAGAGAATTCAAACTCTACAACTGGATAAGAATTCGGAGAT
TTATTTCCAGACGTTTCGAGTGACATCCATCACTCTTCTTCAGCGTCACT
AAAATGAACTAGCAGAACTAACCAGTTACTTATCCAGTTGTAGAGTTTGA
ATTCTCTTTACATACTGTATAAACTATAGACATTTTGAATCCCACGACCT
AAATCATCTTTCTTCACAACGCTAAGTCTTTGTAATAGGCACTGGCTAAT
CGAGCATCCCTGATTGTACGTTAATTAAAGCGAACGAATAAGAAGATCAA
TAAACATCATGTAAGTTTAAGGAAACAGAATGTTGGAATTGATAGTATTC
AAGTGATGACTGTATGTATTAACTAATGAGTATTGACACCAATTTTCCTC
TCTTTTGAACATAGACGTGGACGAATGTTTAACGAACAATGGTGGCTGTG
GCCAGACTTGCACGAACACAGAGGGAAGTTATGACTGTTCTTGTAGTAAT
GGCTACACCCTGAATGTTGATGGACAGTCATGTGACGGTAGGCGTCTTTT
GTTTTGCATAGATTTTGCTCCTACAGACCCCTGCAAAGGTGGACAAATTT
CAGAAAACTGCAACCACAATAACTATCATGATAGAGGAATGTATTTGTTG
TGTTGTTAAGACGCATCTTTAATACTTTGAATAACTTGTGCTATCTGCGT
AGAGAAGAGTATGTCTTTGCAAATGAGGACCCTATTTGCATTATCAAATA
AAGAGGATCTTTTAGTATACGTCAGTCATAAAGGTTTTCATCGTTTGGCG
AATGGATTTGGCTGCAGATCTCTATAGATACTACATATATGTTCTTATGA
AAGATACTGTGTATAATATTCCAGATATGGGAAATTCGCTTCAGGGCTAA
GCCATTGTGATAGTCACAGGCCAATTAGCCAGCCCTGACTGTATGTCGTT
TTAAGCCTAACGCATAAGAAAATAAATTAACCTCATTCTCAAGGAGACCA
AATATTTTCCTTACTAGCATTAGAATGATGGCTTTATGTATTAGCCAATG
TGCCTAAGCGTCGTTTTTCTCTCTTTTAAACATAGACGTGGACGAATGCG
TTACGAACGCAGTTCCACGTGGCTGTGAGTATACTTGCACGAACACAAAG
GGGAGTTATGAGTCATGTGATACTGGCTGCACCCTGAAAAAATACTCATG
TTTTTAAAAATCGACAAGTACTAATCACAGCTGTATGCATTAATGTATCT
TGGCACCATCTTCCTGTTCTTTGGAACATAGACGACAACGAATGCTTGAC
GGACAACGGTGGCTGTGACGACACTTGCACGAACACAATGGGGAGTTATA
TGTGTTCATGTGATAATGGCTACGTTCTGAATGATGATGGGCATTCTTGT
GACGGTAGGCGTCTTTTGTTTTGCATAGATTTTGCAGGTAGCATACATCC
ATTGTAAAGAGAAACTTCTACAAAGCGTTAGTTGTAAAGTTTTGAATCGT
CTCTTGTTTTGCAAAGATTTTGTCCATACAGGCTTCTAAAAAGGTTGACA
CATTTGGGAAAACAGCGACTACAAAAATGCGTTGCTTAGATAAAACTTTG
ATATTTTGAACAAGTTGTATTATTGTAAAGAGAAGATCATTTAATTAATG
ATACAATGTTTGCAAATGATGACCTTATTTGCATTACCAAAGAGAAATTT
TCAGAATACGTCAGCTGTAAAAGTTTACATTGTTTGGTGAAATGAATAGT
TTGCGTTCCTTTCACAGTAGGTACCAGACTTTTGCTCTTACTAAACAGTA
CTCTATATACTATAGGTTTGTTAAATTTTTACGACCTCTTTTAGTTTTAT
CTAGAGGGCCAATCCATTGTGATAGCAACTGGCTAGGAATTAAATCTTCA
AAAAACGTATCTTCAAAGAGATAAAAGAATCAACATTTACATGTATTAAG
AATGATGGCTGTATGTATTAACTAATGTGTGTTGGTACCACTTTCTCTAT
CTTGGAAACATAGACGTGGACGAATGTAACATGTACAATGGTGGCTGTGG
GCAGACTTGCACGAACACAATGGGGAGTTATGACTGTTCATGTGATACTG
GCTACACTCTAAATGCTGATGGGCATTCATGTGACGGTAGGCGTCTTTTG
TTTTGCATAGATTTTGCAGGTAGCATACATCCATTGTAAAGAGAAACTTT
TACAAAGCGTTAGTTGTAAAGTTTTGAATCGTTTTTCGAATGGACCTCTC
ACTGTACATGCCACATATATGATACTATAGATGCATTATCTAATGTGT

Coding sequence (CDS) from alignment at Sc0000027:2481013..2483810-

>transcript:BL76820_cuf0 ID=transcript:BL76820_cuf0|Name=transcript:BL76820_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2172bp|location=Sequence derived from alignment at Sc0000027:2481013..2483810- (Branchiostoma lanceolatum)
GTGAACGAATGCGACACGGACAATGGTGGTTGTGACCACACTTGCACGAA
CACAGTGGGGAGTTATTACTGTACATGTGACGCTGGATACACCCTGAATG
TTGATGGGCATGCATGTGACGACGTGGACGAATGTTTAACGAACAATGGT
GGCTGTGGCCAGACTTGCACGAACACAGAGGGAAGTTATGACTGTTCTTG
TAGTAATGGCTACACCCTGAATGTTGATGGACAGTCATGTGACGACGACA
ACGAATGCTTGACGGACAACGGTGGCTGTGACGACACTTGCACGAACACA
ATGGGGAGTTATATGTGTTCATGTGATAATGGCTACGTTCTGAATGATGA
TGGGCATTCTTGTGACGACGTGGACGAATGTAACATGTACAATGGTGGCT
GTGGGCAGACTTGCACGAACACAATGGGGAGTTATGACTGTTCATGTGAT
ACTGGCTACACTCTAAATGCTGATGGGCATTCATGTGACGGTAGGCGTCT
TTTGTTTTGCATAGATTTTGCAGGTAGCATACATCCATTGTAAGTGAACG
AATGCGACACGGACAATGGTGGTTGTGACCACACTTGCACGAACACAGTG
GGGAGTTATTACTGTACATGTGACGCTGGATACACCCTGAATGTTGATGG
GCATGCATGTGACGACGTGGACGAATGTTTAACGAACAATGGTGGCTGTG
GCCAGACTTGCACGAACACAGAGGGAAGTTATGACTGTTCTTGTAGTAAT
GGCTACACCCTGAATGTTGATGGACAGTCATGTGACGACGACAACGAATG
CTTGACGGACAACGGTGGCTGTGACGACACTTGCACGAACACAATGGGGA
GTTATATGTGTTCATGTGATAATGGCTACGTTCTGAATGATGATGGGCAT
TCTTGTGACGACGTGGACGAATGTAACATGTACAATGGTGGCTGTGGGCA
GACTTGCACGAACACAATGGGGAGTTATGACTGTTCATGTGATACTGGCT
ACACTCTAAATGCTGATGGGCATTCATGTGACGGTAGGCGTCTTTTGTTT
TGCATAGATTTTGCAGGTAGCATACATCCATTGTAAGTGAACGAATGCGA
CACGGACAATGGTGGTTGTGACCACACTTGCACGAACACAGTGGGGAGTT
ATTACTGTACATGTGACGCTGGATACACCCTGAATGTTGATGGGCATGCA
TGTGACGACGTGGACGAATGTTTAACGAACAATGGTGGCTGTGGCCAGAC
TTGCACGAACACAGAGGGAAGTTATGACTGTTCTTGTAGTAATGGCTACA
CCCTGAATGTTGATGGACAGTCATGTGACGACGACAACGAATGCTTGACG
GACAACGGTGGCTGTGACGACACTTGCACGAACACAATGGGGAGTTATAT
GTGTTCATGTGATAATGGCTACGTTCTGAATGATGATGGGCATTCTTGTG
ACGACGTGGACGAATGTAACATGTACAATGGTGGCTGTGGGCAGACTTGC
ACGAACACAATGGGGAGTTATGACTGTTCATGTGATACTGGCTACACTCT
AAATGCTGATGGGCATTCATGTGACGGTAGGCGTCTTTTGTTTTGCATAG
ATTTTGCAGGTAGCATACATCCATTGTAAGTGAACGAATGCGACACGGAC
AATGGTGGTTGTGACCACACTTGCACGAACACAGTGGGGAGTTATTACTG
TACATGTGACGCTGGATACACCCTGAATGTTGATGGGCATGCATGTGACG
ACGTGGACGAATGTTTAACGAACAATGGTGGCTGTGGCCAGACTTGCACG
AACACAGAGGGAAGTTATGACTGTTCTTGTAGTAATGGCTACACCCTGAA
TGTTGATGGACAGTCATGTGACGACGACAACGAATGCTTGACGGACAACG
GTGGCTGTGACGACACTTGCACGAACACAATGGGGAGTTATATGTGTTCA
TGTGATAATGGCTACGTTCTGAATGATGATGGGCATTCTTGTGACGACGT
GGACGAATGTAACATGTACAATGGTGGCTGTGGGCAGACTTGCACGAACA
CAATGGGGAGTTATGACTGTTCATGTGATACTGGCTACACTCTAAATGCT
GATGGGCATTCATGTGACGGTAGGCGTCTTTTGTTTTGCATAGATTTTGC
AGGTAGCATACATCCATTGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL76820gene:BL76820Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL76820_cuf0transcript:BL76820_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL76820_cuf0-E1BL76820_cuf0-E1-1564476830-168656Branchiostoma lanceolatumexon
BL76820_cuf0-E2BL76820_cuf0-E2-1564476830-168653Branchiostoma lanceolatumexon
BL76820_cuf0-E3BL76820_cuf0-E3-1564476830-168651Branchiostoma lanceolatumexon
BL76820_cuf0-E4BL76820_cuf0-E4-1564476830-168649Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000027genomeSc0000027:2481013..2483810 -
Properties
Property NameValue
Transcript idBL76820_cuf0
Biotypeprotein_coding