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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL76686_cuf0 >transcript:BL76686_cuf0-protein ID=transcript:BL76686_cuf0-protein|Name=transcript:BL76686_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=742bp
MRRIACWKYIIVSDLTFAYHQIPLHPNSRKYCGIVTPLKGIRVYLRSAMG
MPGSETALEELMSRTLGPLLMRGAVAKIADDLYCGGNTFDELVNNWRDVL
TALHNCDLRLSPSKTIICPRSTTILGWHWNQGQISASQHTLCTLATCPPP
QTMTALRSYIGSYKALSRVIPGTSVLLGPLDDMVAGQPSTDKIQWNDDTL
SIFHKAQHGLAAHQTIVLPRPEDELWLVTDAAVRPTGIGGTLFIRRNGAT
RVAGFFSCKLKKNQRQWLPCELEALAISSALKHFKPYFIQTTMPAFVLTD
SKPCVEAVEKIRRGEFSCSPRVSTFLSAVSQFPITVKHIRGKHNLSTDFA
SRHPLECTESKCQICSFVHTISEEPVINTSSLNSKSDLNSPVYTSRSAWR
TIQSSCPSPRRVFAHLQQGTRPSKKEMNILDIKSYLWKTAISADGLLIAP
NRDIFGMTRHRIVVPRHVVHGLTTAIHLKLGHPSQHQLKTVFSRYFYALG
MDAIVHKVTTACDQCEALKRQIPVPPTFTTQPPPKSVLTTFATDVMKRAR
QIILVVRECSTSYISTQVIPDETSKTLRDGLPVVTLCTPLRPLDSPPAII
RCDPAPGFQTLVHDSWLAENSLQLEIRENKNVNKNPVAERAIEELRAELC
KVDPLGQPVSPAQLAVVTAAINTKVRSNGLSSREYMYLYQRDQFSGEQIP
LSDRYLLEEQHQRRSDNHLPSNLGQKHPRARSNQPHLSLLVT Run BLAST on NCBI mRNA from alignment at Sc0000658:62490..66162- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL76686_cuf0 ID=transcript:BL76686_cuf0|Name=transcript:BL76686_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3673bp|location=Sequence derived from alignment at Sc0000658:62490..66162- (Branchiostoma lanceolatum)
GCTGAATCCAGCATGATCCGTGAGGATGAAGCCAAATGCCTGGGACTGAA
GATCGTTCCCAACAGCACACAGAAACCAAGCCAGGCTGATGGCGGACGCA
TGTCTGGTGTTCTAGGGGAATGCAGAACCACTTTCTACCGACACAAATTG
CCCCTGCAGTTTGACGCTCTAGTGGTTACCGATTTGGCATCTCCCATCAT
CGCTGGAAATCCCTTTCTAGAGACCAATGACCTTCACAATAGACTTCAAA
CGAAAACAAATCCAGCTTCCAGATGGATCTACCACAGAGTATACCCCAGT
CAGAAAGCAGTTCCAGCCACACATTAACCGCATCTCAAACAACCTTCTCC
GAATGCAAGACAAAACCGCAACGATATGGCCTAATGACTTCATAGATCTA
GCACTTTCAGCCGAGATCAATGACTACCAAGATGTAGTGTTAGAGCCCAG
GTATGACTCCCTCTCTTACAAACAGATGAAATCTTTCAAACAGGGCACAT
ATCGCAACATTGCAGGCCACATCCGAGTCCCTAACATCTCAACCGTCCCC
ATCCATGTTACCAAAAACATGCATCTCTTCAATGTCGTGCCAGTAGTTCC
AGTAGAAGAGAACCCACCAGCAGAGCAGAGTTGTGAAGAACCACTCCTAC
ACTTGCCCACCAGTCAACACCGTTTACTGATACAGTACAACTGGACCCAG
ACAACACTCTCAGCTCAACTCAGCGCCACAAAATGTCTTCAGTCCTTCAA
GCCTATGACAAGGTATTTGACACTGCCTTTCCAGGATACAATGACGCTGT
TGGTCCTATTCGTGCAGTAGTCAATATGGGTCCAGCCCAACCTCCACAGA
GAAAGGGACGACTCCCCCTTTATGGCAGAAACCGTCTTGTGGACCTGCAA
CAGAAGCTTGATGAGCTGGAGACAAGGGGGGTAATAGCTACACCCGAATC
TGCAGATACTGTGGTGGAATATTTGAATTCTTCATTCCTGGTAAATAAAC
CCCACGGTGGCCACCGCCTGGTCACAGCCTTCGCAGACGTTGCAAAATAC
TGTAAGCCACAGCCCTTCTTGCTTCCTGATGTCAATCAAGTTATATGCGT
CGAATCGCATGCTGGAAGTACATTATTGTCTCAGATCTTACTTTTGCATA
TCACCAGATTCCCCTGCACCCTAACTCTCGCAAGTATTGTGGTATTGTAA
CACCTTTAAAGGGAATTCGTGTCTACCTCAGAAGTGCCATGGGCATGCCG
GGTAGTGAGACAGCACTTGAGGAGCTCATGTCACGCACTCTGGGACCTCT
GCTGATGCGGGGAGCTGTGGCGAAGATTGCAGATGACCTGTACTGCGGTG
GCAACACATTTGATGAGCTTGTTAACAACTGGAGAGATGTCCTGACAGCC
CTACACAACTGCGACTTGAGACTCTCTCCCTCCAAAACCATCATCTGCCC
CAGAAGCACAACCATCTTAGGGTGGCACTGGAACCAGGGTCAGATATCAG
CGTCCCAACACACCTTATGCACACTGGCTACCTGCCCTCCTCCACAGACC
ATGACTGCTCTAAGGTCATATATTGGCTCCTACAAAGCTCTCTCCCGCGT
TATCCCAGGAACTTCTGTCCTCCTGGGTCCCCTAGACGACATGGTCGCAG
GTCAGCCTTCTACCGATAAGATTCAATGGAATGATGACACCTTATCAATA
TTCCATAAGGCCCAACATGGACTTGCAGCACACCAGACTATTGTCCTCCC
AAGACCGGAAGACGAGCTTTGGCTTGTAACAGATGCAGCTGTCAGACCCA
CAGGAATTGGCGGAACGCTATTCATTAGACGAAATGGTGCAACCAGAGTG
GCAGGATTCTTCAGTTGTAAGCTGAAGAAGAACCAGCGACAGTGGCTACC
CTGTGAACTGGAAGCATTAGCCATCTCCTCCGCCTTAAAACATTTCAAGC
CCTACTTCATTCAGACAACAATGCCTGCGTTTGTCCTCACCGACTCCAAA
CCATGTGTCGAAGCAGTAGAAAAGATTCGCCGTGGAGAGTTCTCCTGTAG
CCCAAGGGTATCCACCTTCCTGTCAGCAGTCAGCCAGTTTCCTATCACTG
TCAAGCACATCAGAGGAAAACACAACCTTTCAACTGACTTTGCGAGCCGC
CACCCGCTAGAATGTACGGAAAGCAAGTGCCAAATATGCTCCTTTGTCCA
CACCATCAGTGAAGAACCAGTAATCAACACATCATCGCTCAACTCCAAGT
CTGACTTAAACAGCCCTGTGTACACAAGCCGTAGTGCATGGCGCACCATC
CAATCCTCCTGCCCTTCACCACGCCGGGTATTTGCTCACCTTCAACAAGG
CACCAGACCATCCAAAAAGGAAATGAATATACTTGATATCAAGTCCTACC
TATGGAAGACCGCTATCTCTGCAGACGGTTTGTTGATTGCACCTAATAGA
GATATATTCGGAATGACTAGACACCGAATCGTCGTCCCCCGCCACGTCGT
ACATGGCCTAACCACAGCCATCCACCTCAAGCTTGGACACCCCTCTCAGC
ACCAGCTGAAAACAGTGTTTTCCCGATATTTCTATGCCTTGGGTATGGAC
GCCATTGTCCACAAAGTCACAACAGCATGTGATCAATGTGAAGCTCTCAA
ACGACAAATCCCTGTGCCCCCGACCTTCACGACACAGCCTCCTCCTAAAT
CAGTCTTAACAACGTTCGCAACAGATGTTATGAAAAGGGCCAGGCAGATC
ATCCTCGTCGTCAGAGAGTGTAGCACTTCGTACATCTCCACTCAAGTCAT
CCCAGATGAAACATCGAAAACCCTCCGGGATGGTCTACCGGTAGTTACTT
TGTGCACACCACTCCGCCCCTTAGACAGCCCTCCCGCTATTATCCGCTGT
GATCCAGCCCCAGGCTTCCAGACTCTGGTTCACGACTCCTGGTTGGCTGA
GAACAGCCTTCAGCTGGAAATTCGAGAGAACAAAAACGTGAACAAGAACC
CAGTAGCAGAGAGGGCGATTGAGGAACTGCGAGCTGAGCTCTGTAAGGTT
GACCCCCTAGGCCAACCTGTCTCCCCTGCTCAACTAGCCGTGGTAACTGC
AGCTATCAACACAAAGGTTCGTTCCAATGGCCTATCATCTCGAGAGTACA
TGTACCTCTACCAGCGAGATCAATTCAGCGGAGAACAGATACCACTTTCA
GACCGATACCTTCTGGAGGAACAACACCAACGACGATCAGACAACCATCT
ACCTAGCAATTTAGGTCAAAAGCACCCAAGGGCAAGGTCAAACCAGCCCC
ATTTATCACTGTTGGTGACTTAATCTACTTACACTCGGACAGAAACAAGT
CCCAGGCACGTAACAGATACTTGGTCACGGCTGCTGACAAAGACTGGGTA
TACATTTCAAAATTCGTGGGCCGTCAACTGCGATCAAGGTCCTATAAAGT
CCGTCCAGTTGACTGCTACTTAGTACCCAACCAGGTCCTACCTCAACACC
GCACAAGCACACATACACTGAGGACGATTCTGACAATGACATCCCTGTTC
CACTGCACCTGCCTTCTGACCCAGCAGAACAACTCCACCCGCCGCACCTG
CCTCCTGTTCCACCAGAACATCAAAACCCACCGCACCTGCCTCCTGACCC
AGCAGAACAACTCCACCCGCNNN Coding sequence (CDS) from alignment at Sc0000658:62490..66162- >transcript:BL76686_cuf0 ID=transcript:BL76686_cuf0|Name=transcript:BL76686_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2229bp|location=Sequence derived from alignment at Sc0000658:62490..66162- (Branchiostoma lanceolatum)
ATGCGTCGAATCGCATGCTGGAAGTACATTATTGTCTCAGATCTTACTTT
TGCATATCACCAGATTCCCCTGCACCCTAACTCTCGCAAGTATTGTGGTA
TTGTAACACCTTTAAAGGGAATTCGTGTCTACCTCAGAAGTGCCATGGGC
ATGCCGGGTAGTGAGACAGCACTTGAGGAGCTCATGTCACGCACTCTGGG
ACCTCTGCTGATGCGGGGAGCTGTGGCGAAGATTGCAGATGACCTGTACT
GCGGTGGCAACACATTTGATGAGCTTGTTAACAACTGGAGAGATGTCCTG
ACAGCCCTACACAACTGCGACTTGAGACTCTCTCCCTCCAAAACCATCAT
CTGCCCCAGAAGCACAACCATCTTAGGGTGGCACTGGAACCAGGGTCAGA
TATCAGCGTCCCAACACACCTTATGCACACTGGCTACCTGCCCTCCTCCA
CAGACCATGACTGCTCTAAGGTCATATATTGGCTCCTACAAAGCTCTCTC
CCGCGTTATCCCAGGAACTTCTGTCCTCCTGGGTCCCCTAGACGACATGG
TCGCAGGTCAGCCTTCTACCGATAAGATTCAATGGAATGATGACACCTTA
TCAATATTCCATAAGGCCCAACATGGACTTGCAGCACACCAGACTATTGT
CCTCCCAAGACCGGAAGACGAGCTTTGGCTTGTAACAGATGCAGCTGTCA
GACCCACAGGAATTGGCGGAACGCTATTCATTAGACGAAATGGTGCAACC
AGAGTGGCAGGATTCTTCAGTTGTAAGCTGAAGAAGAACCAGCGACAGTG
GCTACCCTGTGAACTGGAAGCATTAGCCATCTCCTCCGCCTTAAAACATT
TCAAGCCCTACTTCATTCAGACAACAATGCCTGCGTTTGTCCTCACCGAC
TCCAAACCATGTGTCGAAGCAGTAGAAAAGATTCGCCGTGGAGAGTTCTC
CTGTAGCCCAAGGGTATCCACCTTCCTGTCAGCAGTCAGCCAGTTTCCTA
TCACTGTCAAGCACATCAGAGGAAAACACAACCTTTCAACTGACTTTGCG
AGCCGCCACCCGCTAGAATGTACGGAAAGCAAGTGCCAAATATGCTCCTT
TGTCCACACCATCAGTGAAGAACCAGTAATCAACACATCATCGCTCAACT
CCAAGTCTGACTTAAACAGCCCTGTGTACACAAGCCGTAGTGCATGGCGC
ACCATCCAATCCTCCTGCCCTTCACCACGCCGGGTATTTGCTCACCTTCA
ACAAGGCACCAGACCATCCAAAAAGGAAATGAATATACTTGATATCAAGT
CCTACCTATGGAAGACCGCTATCTCTGCAGACGGTTTGTTGATTGCACCT
AATAGAGATATATTCGGAATGACTAGACACCGAATCGTCGTCCCCCGCCA
CGTCGTACATGGCCTAACCACAGCCATCCACCTCAAGCTTGGACACCCCT
CTCAGCACCAGCTGAAAACAGTGTTTTCCCGATATTTCTATGCCTTGGGT
ATGGACGCCATTGTCCACAAAGTCACAACAGCATGTGATCAATGTGAAGC
TCTCAAACGACAAATCCCTGTGCCCCCGACCTTCACGACACAGCCTCCTC
CTAAATCAGTCTTAACAACGTTCGCAACAGATGTTATGAAAAGGGCCAGG
CAGATCATCCTCGTCGTCAGAGAGTGTAGCACTTCGTACATCTCCACTCA
AGTCATCCCAGATGAAACATCGAAAACCCTCCGGGATGGTCTACCGGTAG
TTACTTTGTGCACACCACTCCGCCCCTTAGACAGCCCTCCCGCTATTATC
CGCTGTGATCCAGCCCCAGGCTTCCAGACTCTGGTTCACGACTCCTGGTT
GGCTGAGAACAGCCTTCAGCTGGAAATTCGAGAGAACAAAAACGTGAACA
AGAACCCAGTAGCAGAGAGGGCGATTGAGGAACTGCGAGCTGAGCTCTGT
AAGGTTGACCCCCTAGGCCAACCTGTCTCCCCTGCTCAACTAGCCGTGGT
AACTGCAGCTATCAACACAAAGGTTCGTTCCAATGGCCTATCATCTCGAG
AGTACATGTACCTCTACCAGCGAGATCAATTCAGCGGAGAACAGATACCA
CTTTCAGACCGATACCTTCTGGAGGAACAACACCAACGACGATCAGACAA
CCATCTACCTAGCAATTTAGGTCAAAAGCACCCAAGGGCAAGGTCAAACC
AGCCCCATTTATCACTGTTGGTGACTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000658 | genome | Sc0000658:62490..66162 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL76686_cuf0 |
| Biotype | protein_coding |
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