transcript:BL76627_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL76627_cuf1
Unique Nametranscript:BL76627_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL76627_cuf1

>transcript:BL76627_cuf1-protein ID=transcript:BL76627_cuf1-protein|Name=transcript:BL76627_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=164bp
MATEGVTELKKENNFLRSEVDQLMLALQQEAKRLEKLIIVGQGKGTTHLK
RTDSVSAAHKRHNPFNDSRTSKLYPDLPKETAEIGHQNVGNSTASIAENE
RNLQSWWARNVCGPLKKKLGNAIDSFFEHVHLRSKMRHKSRRRRRQFEGT
IPDSAARNSSAVVA
Run BLAST on NCBI

mRNA from alignment at Sc0000102:50540..54200-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL76627_cuf1 ID=transcript:BL76627_cuf1|Name=transcript:BL76627_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3661bp|location=Sequence derived from alignment at Sc0000102:50540..54200- (Branchiostoma lanceolatum)
GGATAATAAACCAAGACGAAGCGACCAGCAAAGAGGGTAAGTAAGCTAAG
GAAAGAAGGATTCTTGTACTAGTTTCTTTTTGGGGTCAATTGTTGTCCAT
CGCAATTTTTCCGCCAGTCCATTTCTTTTGTAAGTGTTCTGTCAACTGCT
TGTTTTGTTTACTAGCCCGTCTTATCCGCGAATCTTTCTGTGCTCGTTTT
AAACCAGGTCAAATCGTTTATCTGGGTTCGTCCACTGCGTGGTTTGACAA
TGGATTGTGAATTCACGCCGTATCTCGCTTTACGATCTTGTGAATCTTAG
ACTCGTTATGAAACATTAACGCTGTTCCCGTTGAACCACTTGAAGATCCT
CCATATCCAAATACAAATTCAGGTTTTGTCGCTTTTTAGATTATGAATAA
TTACCTGTATTGTTTATTTCTACCAAAGATCTCATATCCTCTGCATGGAC
AAGGAAAACCATTGGTGGAAACCTGTTCTGTTGGTTCATGAATATTCATA
TCGTAAAACATTCTGTCCAAAGTCTTCAGCATAAAATTCTTCCCTTGGAT
TGAACACTCACGTCTTTTGGCTGAGAATGCGGTGGGCACAGTTAATGAGT
TATATTTCATTGTGTAACGGTAATAAGAGCGACACATTTGTATGCACGTC
GAAAGAAATCATTTTGTAGTATGAAAATGTTTTTTCAAGTGTGCTTTCGT
AATCTTTTAAGCCTCGCCCCACATTCAAGAGGTGGACGTTTATCCAAGAG
GGCTCGTATACCCCGGAACACCGGCTGCTTTCCGACAGATAGGATCTAAC
CATCGCAGCAAAACAAGATGGCGACTGAGGGTGTAACTGAGCTGAAGAAA
GAGAACAACTTCTTGAGAAGCGAGGTGGATCAGCTGATGCTTGCCCTACA
ACAAGAAGCCAAGCGGTTGGAGAAACTGATAATTGTGGGCCAAGGGAAGG
GAACGACACATTTGAAAAGGACAGATTCCGTTTCCGCAGCCCATAAAAGA
CACAACCCTTTCAACGATTCTCGGACGTCCAAACTCTACCCAGACCTACC
AAAAGAAACAGGTACCAATTCTAGTTCACTAGCCTGGATACCAGACCGCT
CGCGCGATGCGATAATCCCTTTTGGGCGGGGAAGCCTGGTAGGGATAGAG
TTGGCACCCGGGCGCTCTTGGCAGCTCGTGTGCTATCTGTGGCGGCGGCG
AAAGTTGCTTCCCCGGCCGAAGGATTAGCGCCAGGAGCGCGGTGGTCTGG
CACCCAGGCTGAATGTAAGGGGAATAGAGATGCAGGCATGTCTGGAGTGC
ATGTGAATGGTGACATATGATATACATGCCTGGAGGTGTATATTATGTAA
TTTAAAAAAAAGAAGACTTATCTAAGGTGTGAATGGGTTAGGGAAGGTTG
GGGAAAGTCATATTAAGGTCACCTGGTGGCGCCGAATGGCAGCCGCCCAG
ACCCTTGTGACAGTTACACAATATGCAAGTGTGGAGCAAATATGCTCATA
TATATTATGCGATTTTAAACCCTGCACCAATTAAGAGCTAAAAAGGTTGC
CATTGCACGGGTAATTTCTGACCAATGAAAACCATAATTCTAACCATTGC
ACAATCTATGTTTCATCCTTTAGCCGAAATAGGCCATCAGAACGTCGGGA
ATTCGACCGCCTCCATTGCTGAAAATGAACGCAATTTGCAGTCATGGTGG
GCGAGAAATGTTTGTGGGCCTCTGAAGAAGAAGCTGGGAAATGCAATAGA
CTCATTCTTCGAACATGTCCACTTGCGGTAAGCAGAAAACAAATTGAGTG
TTACTGTAAATGTATTTAAGTTCGCGTGGTTTTTATTTCGCGCTAAGGCG
AAAATTGAGTATTCACGGTGGTTTAAGTTTGCAGCAGTGCTATAGTCACA
TACTGCTACAGTATTGGACAAAAATGCGGTGGCTTTAAGTTCGCGGTGAA
ACGGTCACGCGAAAACCGCGAACATAAAACCACCGTGAACATTTCTGCAT
TTACAGTATATTTGAACAATAGCCATGGCAAAGTGTGTGTGTGCGGGGGG
TAAAATTAGAGTTTGATTCTTATCAAGAATATTTCCCCCACTCTGCAATC
TTGTCACCATGGGTTTTAGTAATCGTGTACCATGGTTATTGAATATTGAC
TTTGCTATGATACTTATACTCACGACAATAACAAAGGGGCGTTTTGTTTG
AGTTTCCAACATTACTTGTATGACATAGTGATACACATATCGTTTCATAC
AAAGTCAAACACTCAGAACTTCACTATCACACATACACACACACACACAC
ACACACACACATCGAAAAAACAACAACACCTTAGATGTACAGTCAGCAAC
ATCTGTTCCTTGAATCCTACTTGACTGAATTTGTAATTAATCATCTTTTT
TTCAGGAGCAAAATGCGTCATAAAAGTCGTCGTCGACGAAGGCAGTTTGA
GGGAACTATACCGGACTCAGCTGCAAGGAATTCAAGTGCCGTAGTTGCAT
GACTGGCGCCAGTAGAATAGTTTGATGATGCATATGATTCGCTTTTCAAA
TACAAAGGAAGTTGAAGTACAGGCTTTAAAAGACAATCTCAAGCGTAGAT
GATATTGTAAAGATGGACAAAATGTTACATACAAATTGGAATGATAACGT
TTTACTGGTATTCAATGCTTCTGGATTAGACCTTATTTACATATGTTTGC
CGTAGAATGAAAGTGATAAATTAAATGATTTAGCTACCATGGAGTTAATT
GGGTAAGCGAGCAGCTACCATGTTTATCTACTTGTCTTCGCTGATTATAT
TACATTAATTGTACCGTAATTTGTACGTAAATTGTATCCTTAATGACAGT
AAATTGCCGAACAATGTGCCACATATGGAGAAGGCAACGCCCAACAGCGA
CAATGATAGGAATGAAAATAGTAATAAATACTGTGTTTCGAGAATGATAA
GTACAGTAATCCTGAGGAACACTTCGTGCATAGCTGTTATCACTGCAAAA
TATTTGTGTTGCACAGCAAACAGTCGGGGGTGTCCCTGTGGTGTGGTGGT
CTGCGCTTCTGTTACTTACCACATCTGGTTCTGATTACTTGAAACCAGAA
GGCCCGAGTTCAACTCCCGGGTAGGACACCTAGGCCTCTGGACAAGAGGC
GCATTGAGTCAAAGACTTTATAAAAATGGTACATACTTATCAAACTGTAT
GGAAATTAAACACACTCCACTGCCAGTGGACTAGCCCCCTGCTGCAGTGA
TTGCACCACAGTGTGGCCCAGGGCTATGAAACGGGGATGGGCACCGCCCT
ATACACCTTATGTGGGAGGATTTTAACTAACTAACTGCACACAGTCAGTG
GCTGAGAAACCGGCACCCAGGGTTAGCCCTTAGAAATAGCTTTCTCTAGT
TGGGCAACCCTGGCATGTAAATACAATGTAACGTTGGGTAACATAAATTC
GCCATTTTTCCGATAATGGTTGACTGAAATCAATCTAGCAGAACAATAAA
CCATCCTTTTTTTCCATTATTCTGTCAGTATCATGTACTATCTTTGCACT
AATCATATATATGGTAGATTTTGTCTCTAGTCGTGCTGACACCATAATAT
TTCAACTTGAAACTACCGTCCGCCGCACGCACAATGACAGTGCTGTCGGA
CAGGGGTGAAC

Coding sequence (CDS) from alignment at Sc0000102:50540..54200-

>transcript:BL76627_cuf1 ID=transcript:BL76627_cuf1|Name=transcript:BL76627_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1485bp|location=Sequence derived from alignment at Sc0000102:50540..54200- (Branchiostoma lanceolatum)
ATGGCGACTGAGGGTGTAACTGAGCTGAAGAAAGAGAACAACTTCTTGAG
AAGCGAGGTGGATCAGCTGATGCTTGCCCTACAACAAGAAGCCAAGCGGT
TGGAGAAACTGATAATTGTGGGCCAAGGGAAGGGAACGACACATTTGAAA
AGGACAGATTCCGTTTCCGCAGCCCATAAAAGACACAACCCTTTCAACGA
TTCTCGGACGTCCAAACTCTACCCAGACCTACCAAAAGAAACAGCCGAAA
TAGGCCATCAGAACGTCGGGAATTCGACCGCCTCCATTGCTGAAAATGAA
CGCAATTTGCAGTCATGGTGGGCGAGAAATGTTTGTGGGCCTCTGAAGAA
GAAGCTGGGAAATGCAATAGACTCATTCTTCGAACATGTCCACTTGCGGA
GCAAAATGCGTCATAAAAGTCGTCGTCGACGAAGGCAGTTTGAGGGAACT
ATACCGGACTCAGCTGCAAGGAATTCAAGTGCCGTAGTTGCATGAATGGC
GACTGAGGGTGTAACTGAGCTGAAGAAAGAGAACAACTTCTTGAGAAGCG
AGGTGGATCAGCTGATGCTTGCCCTACAACAAGAAGCCAAGCGGTTGGAG
AAACTGATAATTGTGGGCCAAGGGAAGGGAACGACACATTTGAAAAGGAC
AGATTCCGTTTCCGCAGCCCATAAAAGACACAACCCTTTCAACGATTCTC
GGACGTCCAAACTCTACCCAGACCTACCAAAAGAAACAGCCGAAATAGGC
CATCAGAACGTCGGGAATTCGACCGCCTCCATTGCTGAAAATGAACGCAA
TTTGCAGTCATGGTGGGCGAGAAATGTTTGTGGGCCTCTGAAGAAGAAGC
TGGGAAATGCAATAGACTCATTCTTCGAACATGTCCACTTGCGGAGCAAA
ATGCGTCATAAAAGTCGTCGTCGACGAAGGCAGTTTGAGGGAACTATACC
GGACTCAGCTGCAAGGAATTCAAGTGCCGTAGTTGCATGAATGGCGACTG
AGGGTGTAACTGAGCTGAAGAAAGAGAACAACTTCTTGAGAAGCGAGGTG
GATCAGCTGATGCTTGCCCTACAACAAGAAGCCAAGCGGTTGGAGAAACT
GATAATTGTGGGCCAAGGGAAGGGAACGACACATTTGAAAAGGACAGATT
CCGTTTCCGCAGCCCATAAAAGACACAACCCTTTCAACGATTCTCGGACG
TCCAAACTCTACCCAGACCTACCAAAAGAAACAGCCGAAATAGGCCATCA
GAACGTCGGGAATTCGACCGCCTCCATTGCTGAAAATGAACGCAATTTGC
AGTCATGGTGGGCGAGAAATGTTTGTGGGCCTCTGAAGAAGAAGCTGGGA
AATGCAATAGACTCATTCTTCGAACATGTCCACTTGCGGAGCAAAATGCG
TCATAAAAGTCGTCGTCGACGAAGGCAGTTTGAGGGAACTATACCGGACT
CAGCTGCAAGGAATTCAAGTGCCGTAGTTGCATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL76627gene:BL76627Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL76627_cuf1transcript:BL76627_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL76627_cuf1-E1BL76627_cuf1-E1-1564476830-303156Branchiostoma lanceolatumexon
BL76627_cuf1-E2BL76627_cuf1-E2-1564476830-303154Branchiostoma lanceolatumexon
BL76627_cuf1-E3BL76627_cuf1-E3-1564476830-303151Branchiostoma lanceolatumexon
BL76627_cuf1-E4BL76627_cuf1-E4-1564476830-303149Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000102genomeSc0000102:50540..54200 -
Properties
Property NameValue
Transcript idBL76627_cuf1
Biotypeprotein_coding