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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL76531_cuf1 >transcript:BL76531_cuf1-protein ID=transcript:BL76531_cuf1-protein|Name=transcript:BL76531_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=438bp
MGNKITSIQRTAFVNLSRLSIIQLHHNKISSVEVGAFDRQSGTLSQLALN
SNELETLEVGVFRNLTELMYLDLSDNLISSLNVGLFRGLQNLTSIELSGN
RISGLPLGVFEDLPSLRKLSLARNDIHNIDNILLALPSNLTSLDLNDNGL
GNLRAGMFSGFPNLRSLKLEANNMDSLPHNLFLGLEKLSLLQLGHNMLVE
LNRSSFGGHPLLEYLSFANNSIVRIEPGFFSTFLKLRQIDVNANDLSCLP
PGIFQNLTALKYLTLDDNRLDNLDADLFRDLNDLSNIYLHENNIKSLPST
IFHGLKSLKILYLHSNELTVIENGTFGGLPEIQYIYLENNPLTNITCGML
PSQNVSKSLWEIDVDCTCEWKPVYDCPEFQWFGSIVTCLRPTHLWADSLD
EIPKDALTCAAPRIACFNLVGMLALSVLTLLSNILIRN Run BLAST on NCBI mRNA from alignment at Sc0000415:152665..157187+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL76531_cuf1 ID=transcript:BL76531_cuf1|Name=transcript:BL76531_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4523bp|location=Sequence derived from alignment at Sc0000415:152665..157187+ (Branchiostoma lanceolatum)
AGTACAGCCGTTCTGTCTCTGCAATATTGCAGTTGTTGGACTCTCCAAAA
TAAGTCCCCGCTCAGATATGTTGTAAAATCGTCGTACGATTGCAAAGTGA
GTACATTCGTGGAGTAGTCATGCATGTGTCGTCCAAAGTTAGGCTGTCAT
GTTTCGGAAAGTGTTGTCTTAGATCCTTACGGTGGTAGTTGGTTCTGTCA
CAGCCTGCCCAAAAATTCCTCTCTACGGAATCAAAATCGTATAAAGACCC
CGCCGTGACGCTAAATCACCTCTTTGCATTTCCATATGTCCAGTGTGACT
CTCGTAAAGGGTGTTAGTTACTCCTGGAAGGGATGTGGGGATGGGGGTGC
AGCAAGGAGCTTTTGTACAGACGCCATATGAATCGCCATGCATAAGCTCA
TTGGTTTAACAAATCTAAGAAGCCAAGATCCATTCATTAATTGTCCATGT
ATATGATAACGTGACGAGATAAAAGAAGGGGACAGTTTATTAGCACGCTA
TAGTCCTTAAACACTACGGGGAAAGTTCGTTATTTCTGAACACATGTGAG
GGCCAATGTCGGGGAGGGAGTAGCTGAACAGACGTCAGTTAGATCATGTA
CAAAAAAAGGAACAAAAACAGGCTTCCAATACACTAATCAGTATTTCAAT
GTCCCAAAACTTTCATCCACTGGACAGCTAAACATATCTAGTTGCCTTTT
TTTTTTCAAAGCCGGGCGTCGACTCCTGTTTTCTAAACCGCTAGAGTGGT
TTGAACGAAAGGAAGCACTAGATTTGAAAAGTAAACACATGCCTGAGCTC
CCTTACTAAAAAGGTAATTCTCCTGCATACGTTGTTAGAGAATTACCGTT
TTTAGTCAGGTAGACCAGGCATGTCTTTAATTTTCAGGAGAATTACCGTG
ACCTTGCCCTGGGCCAAAAATAGCACACGGAGTACACTAGAGAATGACTG
TGACCTTGCTCTGAGCCATGTATGCTAGAGTTGTGTCAACCACTCCCTTT
CTCTGTTCCACAGAACGCCAAACAGCGTACACAGGACCAGAAATAGTACA
GTGTGTCAGAAGGTCACTGCGAGCTCGAGTCATCTTATTGCTTAAACGAG
CGCTCAAGATGCAGGTATTGGATTACAGATCATTTACTATGTACATAATA
TACATAGACCAATTATGGGTTGACTGCATTGGTAATTTGGAGATCTAGCC
CATAGAGCGGGACTGTTCATTTGTAGAAGGTGGTACCCTTAGGCCATGTT
GATTTTATTACATGGATGACATCCTCCGGGAACCCCCAAACTGATGCGTG
CGTGCGAATAAAATGAAAACGTTTTGCAAATTAAAAGTTGCCTTTATTAT
GAAATCTACGTGATCAGGAGATCGTATATCAAATACTGGATTCTTCATTT
TTGTTCTTTCACATTGTTCTTCTTTGACTTTCTACAACTGTTACATTAGT
ATTCGCTTTTCAAAGTGTCTTGTTTCAATTTGCGACGTATATTTGCTCAT
TTGTGGCAGCTTTGCACGATTTACAGTAACCCTTTTTTTTGGAAATAGAC
GAAAATTGATACGTGCGCGGATGCCATCCATATACTAGTAATCAAATCAA
CACGACCTTACCCCTTAGAGAGAGAGGGGGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTCATGATATATTAACTCA
ATATATGGAGATGGACCATAGAGTTATTCATCTCCAAGCAGATATTTCGA
CCTATCTCCAATGTAGGAAATCGCGGCCATCATTAGGGGTAGGTACTATT
TCGCAAAAGTGCTGTTTTTGCAGAAATACGCACCAAGAAATATAGGGACG
GTCTATCTGAATATTAAAATGCAAAAATTTAGTATTTTCTTCAATATTAA
CCCCCCTGTACAACCCCCAATTCAATGGCTTAGTGGGTAGAGTGTTCGCC
TTGCATACGGTAGGTCGTGAGTTCGAACCCCGGCCGGGTCATACCAAAGG
ACTTAAATTTTTAACTTAACATACCCCCTAAAGTTTGTACCATGACTATG
TACTAAACCAGTATAAAGGTATGCTAGCAAAAATGATTAATGCCTTAAAG
TATAAGTACTTTTAGTTCAGAAGATATTACAGTGAACATCTGACCCCAGA
ATCTATTCTCCACACAGATGTCGGCTATTCCCAAATCACCCCCATTGAAA
AAAATGGACTAGTCCAATTAGAACATGTACAAACTTCAAGGGGTATGTAC
AGGGGGGTTAGACCCCAATGATTGGCCAAATTTTGTGATTTCTGTGCTTA
GATAGACAATCTCCATATTCTGAAATGCGTAAAAGTTTGAATAAGTAACC
CCCACCCCCCTACCAATACTTATCCCCCGACTGAACCATTTTGAAAGAAA
AAGCAAACAAACAAATGTGTTCTTGCTTCCCGTGACATTATATCGCCAGC
ATTATCTAGTTGACGTGTATTCCTCAATTTCAGGACTCAAAAGCTTTCGC
CAAGTTCACCGCAAGGACAGTATGTGCACTGGTTCTGATGACGCATCTGA
TTCCTGTGCACGGCCAGCCCGTGGTAGCCTGTGACGCCGCCGGAGACAGC
CTCGCCTGCAAATGTCGGCATAGTTACGTCTCCTGCAAGTTTGACGACTT
GACGGAAGTGCCGACGGGTTTGCCAAACGACACCGTCGTCCTAGACCTAT
GGGGAACAAGATCACGTCGATTCAGAGAACGGCGTTTGTTAATCTTTCCA
GATTGTCCATAATCCAGCTTCATCATAACAAAATTTCGTCTGTTGAGGTC
GGGGCTTTCGATCGGCAATCCGGCACTCTGAGCCAACTGGCGTTAAACAG
CAACGAGTTGGAGACTTTGGAAGTTGGTGTCTTTAGAAACCTGACAGAAT
TAATGTACTTAGACCTTAGCGACAACTTGATTTCGAGCTTAAACGTTGGT
CTCTTTCGAGGCCTGCAAAACCTAACATCCATCGAACTCAGTGGAAATAG
GATTTCAGGTTTGCCTTTGGGTGTTTTTGAAGACTTACCATCATTGCGTA
AACTTAGCTTAGCAAGGAATGATATACATAACATAGACAACATTTTACTT
GCTCTACCCTCAAACCTTACGTCTTTGGATTTAAACGATAACGGTCTGGG
GAACTTGAGAGCAGGTATGTTCAGCGGATTTCCCAACCTGAGGTCGCTGA
AGCTTGAAGCAAATAACATGGATTCTCTTCCCCATAATCTTTTTCTTGGC
CTCGAAAAGTTGAGTCTGTTACAGCTAGGCCACAATATGCTAGTGGAGCT
CAATCGAAGCAGCTTTGGCGGCCACCCCTTACTGGAGTATCTCAGTTTTG
CCAACAATTCTATCGTAAGAATAGAGCCTGGGTTCTTCAGTACATTTCTG
AAGTTAAGGCAAATTGATGTTAACGCTAACGACCTTTCATGCCTACCGCC
CGGGATATTTCAGAACCTCACTGCTCTCAAGTACCTTACGTTGGACGACA
ATAGACTTGACAATCTCGATGCCGATCTCTTCAGAGACCTTAACGACCTT
TCGAATATATATTTACATGAAAACAACATAAAAAGCCTACCTTCTACCAT
TTTCCATGGTCTGAAAAGTCTCAAGATTCTGTACCTTCACAGCAACGAAC
TTACCGTTATTGAGAACGGTACGTTTGGCGGCCTCCCAGAAATACAATAC
ATTTATCTGGAAAATAACCCACTGACGAACATAACCTGTGGTATGCTCCC
ATCTCAGAACGTGTCAAAGTCTTTGTGGGAAATTGATGTTGACTGTACGT
GTGAGTGGAAACCTGTGTACGACTGTCCAGAGTTTCAGTGGTTTGGTTCC
ATTGTGACGTGTTTGAGGCCCACTCACTTGTGGGCCGATTCGCTTGATGA
AATCCCAAAAGATGCTTTGACATGTGCCGCCCCTAGAATTGCTTGCTTCA
ACCTAGTAGGCATGCTTGCTTTGTCGGTCCTTACGTTGTTGTCTAATATC
CTTATAAGAAATTGACATGACAACACGATACTGGATGTGCTAGCATACTC
CTAGAATGATAATCTCCATAGTTCGATGCCTAGAAGTGCATCGTCAACTA
TAGCCTCACTATTGAGCAAACCCGTTAAGAATCTGCATTTTTGTAGAAAT
ATACATGAATAAATGTGTAATTCCCTGGACCATCGACAGGTTTTAAGAAA
GACAACAGTTGAGACAGACGCTAAATAAGTGAAGTAGTGCATCTGGTTAG
AGTAACTGCGCTTGATTCAAGAAGGTAACATCGACTGCAATGCCGTTTTA
ATTTCTGTATATGTCCATCATTTAAATAAACCATTTATATATGTATTGTT
TATAACATGAGTGTTGATATTGATGCCATGCATGTAACTGATAATACAAG
AAATAAACGCAGTTTTGAATAATATTGACAATGGAAAATCCACTGTTCAG
TAAGTGCTTAATATTGATGATATGCATGTAACTGATTGTACAAGAAATAA
ACGCAGTTTTCAGTATAAATTAC Coding sequence (CDS) from alignment at Sc0000415:152665..157187+ >transcript:BL76531_cuf1 ID=transcript:BL76531_cuf1|Name=transcript:BL76531_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1317bp|location=Sequence derived from alignment at Sc0000415:152665..157187+ (Branchiostoma lanceolatum)
ATGGGGAACAAGATCACGTCGATTCAGAGAACGGCGTTTGTTAATCTTTC
CAGATTGTCCATAATCCAGCTTCATCATAACAAAATTTCGTCTGTTGAGG
TCGGGGCTTTCGATCGGCAATCCGGCACTCTGAGCCAACTGGCGTTAAAC
AGCAACGAGTTGGAGACTTTGGAAGTTGGTGTCTTTAGAAACCTGACAGA
ATTAATGTACTTAGACCTTAGCGACAACTTGATTTCGAGCTTAAACGTTG
GTCTCTTTCGAGGCCTGCAAAACCTAACATCCATCGAACTCAGTGGAAAT
AGGATTTCAGGTTTGCCTTTGGGTGTTTTTGAAGACTTACCATCATTGCG
TAAACTTAGCTTAGCAAGGAATGATATACATAACATAGACAACATTTTAC
TTGCTCTACCCTCAAACCTTACGTCTTTGGATTTAAACGATAACGGTCTG
GGGAACTTGAGAGCAGGTATGTTCAGCGGATTTCCCAACCTGAGGTCGCT
GAAGCTTGAAGCAAATAACATGGATTCTCTTCCCCATAATCTTTTTCTTG
GCCTCGAAAAGTTGAGTCTGTTACAGCTAGGCCACAATATGCTAGTGGAG
CTCAATCGAAGCAGCTTTGGCGGCCACCCCTTACTGGAGTATCTCAGTTT
TGCCAACAATTCTATCGTAAGAATAGAGCCTGGGTTCTTCAGTACATTTC
TGAAGTTAAGGCAAATTGATGTTAACGCTAACGACCTTTCATGCCTACCG
CCCGGGATATTTCAGAACCTCACTGCTCTCAAGTACCTTACGTTGGACGA
CAATAGACTTGACAATCTCGATGCCGATCTCTTCAGAGACCTTAACGACC
TTTCGAATATATATTTACATGAAAACAACATAAAAAGCCTACCTTCTACC
ATTTTCCATGGTCTGAAAAGTCTCAAGATTCTGTACCTTCACAGCAACGA
ACTTACCGTTATTGAGAACGGTACGTTTGGCGGCCTCCCAGAAATACAAT
ACATTTATCTGGAAAATAACCCACTGACGAACATAACCTGTGGTATGCTC
CCATCTCAGAACGTGTCAAAGTCTTTGTGGGAAATTGATGTTGACTGTAC
GTGTGAGTGGAAACCTGTGTACGACTGTCCAGAGTTTCAGTGGTTTGGTT
CCATTGTGACGTGTTTGAGGCCCACTCACTTGTGGGCCGATTCGCTTGAT
GAAATCCCAAAAGATGCTTTGACATGTGCCGCCCCTAGAATTGCTTGCTT
CAACCTAGTAGGCATGCTTGCTTTGTCGGTCCTTACGTTGTTGTCTAATA
TCCTTATAAGAAATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000415 | genome | Sc0000415:152665..157187 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL76531_cuf1 |
| Biotype | protein_coding |
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