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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL76466_cuf0 >transcript:BL76466_cuf0-protein ID=transcript:BL76466_cuf0-protein|Name=transcript:BL76466_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=785bp
MMKKARLTMVLVMCSLAVCMSAATRGVQWCSYKTGVLSCVKMGLRHVPIL
VPRQTEELHISINRIPALYNDSFVGMGQLEVLDVSRNLITDIEEGTFWNL
KSLRLLNLGGNRLTVLRSHVFKTLSSLQRLQLDQNMFKSTAAISSALLPL
VSLNVLTFNKNKLSRIKLEPEFAKLNKLDILDLAEMSIPSLQAESFQVMK
NHSLTHFSLGGNRLVDIPQKALKPFVSIKQLDLGYNNLAPKVLATIFNNT
RGLGITNWTLMNNALTELTNATFFPLFDEEVIYIRLDGNSISQLTDYLFA
YVPQLRVLSLKNNPIERLSARVFAGCDRLLHLGLNSLDLSEIPSGSFEPL
KNLTKLNLDSNMIHEVRDRAFVSIPKLRILWMNGNRIEMIWKNAFSGLHH
LEDLNLGANNLRNIPSRALRVIGPSLKKLDLSANRNLKTISPNSFNRLHK
LAVLKLQSCRIRSIGNSTFAGLYNLQRLDLSYNKITTIDSGSFHDFLSIK
VLNLNDNVLGSHESSSPFRNLISLIELHSDYQKDTAGIFPDGYLDGLTSL
RLLSLKSEKLITLETKTDKTSIFKKLKDLRYLLLTQNKISHLTRDTFAGL
TNLTYLYLGSNSIRALPLGVFRDQGRLQYLELRYNGIVTLAPEVFSPLQS
LVMLNVYSNSLACSCAIEWFKDWIASSMNVTTGVQGVYFEAYKNYTCASP
KSLRNKPLIDINFDILGCKSRLNFYMAIGSSCTILILMMTITLTYRYRWY
GRYAMFLLRAKFNKYELIREEEENPKTYDAFVAHN Run BLAST on NCBI mRNA from alignment at Sc0000086:394420..397459- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL76466_cuf0 ID=transcript:BL76466_cuf0|Name=transcript:BL76466_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3040bp|location=Sequence derived from alignment at Sc0000086:394420..397459- (Branchiostoma lanceolatum)
AGCTTTCACTGTCTATAAATCGGACAAAGTTGGAGTAAGAGGCTGTTTGG
TGTTCTGCACGACATGTCTTCACACCTCAGAATTTGTACATCGCATATAG
CATAGGTAAATATTTTTCACTGACCCCTTTACTTAAACGTTATCGTAATT
TGCTGTTCTTCATCTGTGAATCCCATTGCAACAGAGATATCTTTTTCGTT
TGTTGAATCAGATCTTTCTCTACTTACATAATCAAACGGCCTAGTGCATG
TATTATTGTCTTCCTATTTTCACTTCTGTATTAATATATTAGGTTCACTT
CTGTCATTACATTGAATAAATGTTCAAATAGGATATGAATTAGTAATGCA
GAACTAACAGTTCTCTTTTCACTGGGCTGTTGGTTTTGAATATTCTCAAT
TCATTTTCTTTTCCTCTTTTTAACCCACTTTGGCCACCGGCCAAAATGTT
GACATATTATTATAAAAAATATAATGCTATTATAAAACTCTGTTTGCTGC
TAGACTTAACTTTAGGTACACCTTTTTAGGATACTTGCTTGCTCCTCAGA
TAACGCCTACGTCCTTAAGGAGTATTACTAATGTACTACATCTCTGTGGT
TTGAGATTACGTTATCCACGTATTTCTTACAGATTCAGCAAATTGATTTC
GCCTGTACGACGAACCCTACATACGCCCGGAGCATGATGAAGAAGGCCAG
ACTGACGATGGTGTTGGTGATGTGTTCACTGGCAGTCTGCATGTCTGCTG
CTACAAGGGGGGTGCAATGGTGCTCGTACAAAACTGGGGTCCTCTCTTGT
GTTAAAATGGGCCTCAGACATGTTCCTATATTAGTTCCCCGACAAACAGA
AGAATTGCATATTTCTATCAACCGCATACCGGCACTATATAATGATTCAT
TTGTTGGTATGGGTCAACTCGAAGTCTTGGATGTGTCTAGGAATCTCATA
ACTGATATTGAGGAGGGAACGTTTTGGAACCTGAAATCGTTAAGACTGTT
GAATCTGGGAGGAAATAGGCTGACGGTATTAAGGTCACATGTGTTTAAGA
CCCTGTCCTCCCTGCAAAGGTTGCAGTTAGACCAAAACATGTTTAAAAGC
ACCGCAGCCATTAGTTCAGCATTGCTGCCATTGGTCTCATTGAATGTCTT
AACATTCAACAAAAACAAACTGTCACGTATCAAGCTAGAACCAGAGTTTG
CAAAGCTGAACAAACTGGATATTTTGGATCTTGCTGAAATGTCGATTCCA
TCCCTGCAGGCTGAGTCTTTCCAGGTGATGAAGAATCACTCCCTCACTCA
TTTTAGCTTGGGAGGTAACCGTCTGGTAGATATACCACAAAAAGCCTTGA
AGCCATTCGTGAGTATCAAACAGCTAGATCTTGGTTACAACAACCTGGCA
CCAAAAGTATTGGCTACCATCTTTAATAACACCAGGGGACTGGGGATTAC
AAATTGGACTTTGATGAACAATGCCTTGACTGAATTGACAAATGCCACAT
TCTTTCCACTCTTTGATGAAGAAGTCATCTACATTCGTTTAGACGGTAAC
AGTATATCTCAGCTTACAGACTATCTCTTTGCATACGTGCCTCAACTGCG
CGTTCTTTCCTTAAAGAACAACCCGATTGAGAGGCTATCAGCAAGAGTGT
TTGCTGGTTGTGACAGATTACTACATCTAGGCTTAAACAGTTTGGATTTG
AGTGAAATTCCGTCAGGATCGTTCGAACCATTGAAAAACTTGACCAAATT
AAACCTGGATTCAAATATGATACATGAAGTCAGAGACAGGGCGTTTGTAT
CGATTCCGAAGTTGAGGATCCTGTGGATGAATGGAAACAGGATAGAAATG
ATTTGGAAAAATGCCTTCTCTGGTTTACATCATCTTGAAGATCTGAACTT
GGGTGCAAATAACCTAAGGAACATTCCCTCTCGTGCACTAAGAGTAATCG
GCCCATCACTAAAGAAGCTGGACCTTTCCGCCAATCGCAACTTGAAAACG
ATTTCACCAAACTCCTTTAACAGACTGCATAAACTCGCGGTCTTAAAGCT
TCAAAGTTGCCGCATAAGAAGTATAGGTAACAGTACATTTGCAGGTCTTT
ATAACTTACAGCGACTAGACCTGTCCTATAACAAGATTACGACAATTGAT
TCAGGTTCTTTCCATGATTTCTTGTCAATCAAAGTGCTTAATCTAAACGA
CAACGTTCTTGGAAGTCATGAAAGTTCATCTCCTTTTCGGAATCTGATTT
CTCTTATCGAACTGCATTCTGATTATCAAAAGGACACGGCTGGAATATTT
CCTGATGGTTACTTAGACGGTCTGACATCCCTTCGGCTGCTCTCATTGAA
GTCAGAGAAACTGATAACATTGGAAACCAAGACAGACAAAACCAGTATCT
TTAAAAAACTTAAAGACCTGAGATACTTGCTGCTGACCCAGAACAAAATC
AGCCATCTCACGAGAGACACCTTTGCAGGGTTGACTAACCTCACGTACCT
GTACCTCGGTTCTAACTCCATCAGGGCTCTCCCGTTAGGTGTATTTAGAG
ATCAAGGTAGACTGCAATATCTGGAGCTTAGATACAATGGAATTGTTACC
CTGGCCCCCGAGGTCTTCAGTCCCTTGCAGTCACTAGTTATGCTCAATGT
TTACAGCAACAGTCTGGCCTGTTCTTGTGCTATAGAATGGTTCAAAGACT
GGATAGCTTCAAGCATGAATGTTACTACAGGTGTACAAGGTGTCTACTTC
GAAGCCTATAAAAACTACACCTGTGCATCACCAAAAAGCTTAAGAAACAA
ACCTCTGATTGACATCAACTTTGACATACTTGGCTGCAAGTCCAGATTGA
ACTTTTACATGGCAATAGGATCGAGCTGTACCATCTTGATCTTGATGATG
ACCATCACATTGACGTATCGATACCGTTGGTACGGACGATACGCCATGTT
CCTACTCCGAGCCAAGTTCAACAAGTATGAACTCATCAGAGAAGAGGAGG
AGAACCCCAAGACGTACGATGCCTTTGTGGCACACAACAG Coding sequence (CDS) from alignment at Sc0000086:394420..397459- >transcript:BL76466_cuf0 ID=transcript:BL76466_cuf0|Name=transcript:BL76466_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2355bp|location=Sequence derived from alignment at Sc0000086:394420..397459- (Branchiostoma lanceolatum)
ATGATGAAGAAGGCCAGACTGACGATGGTGTTGGTGATGTGTTCACTGGC
AGTCTGCATGTCTGCTGCTACAAGGGGGGTGCAATGGTGCTCGTACAAAA
CTGGGGTCCTCTCTTGTGTTAAAATGGGCCTCAGACATGTTCCTATATTA
GTTCCCCGACAAACAGAAGAATTGCATATTTCTATCAACCGCATACCGGC
ACTATATAATGATTCATTTGTTGGTATGGGTCAACTCGAAGTCTTGGATG
TGTCTAGGAATCTCATAACTGATATTGAGGAGGGAACGTTTTGGAACCTG
AAATCGTTAAGACTGTTGAATCTGGGAGGAAATAGGCTGACGGTATTAAG
GTCACATGTGTTTAAGACCCTGTCCTCCCTGCAAAGGTTGCAGTTAGACC
AAAACATGTTTAAAAGCACCGCAGCCATTAGTTCAGCATTGCTGCCATTG
GTCTCATTGAATGTCTTAACATTCAACAAAAACAAACTGTCACGTATCAA
GCTAGAACCAGAGTTTGCAAAGCTGAACAAACTGGATATTTTGGATCTTG
CTGAAATGTCGATTCCATCCCTGCAGGCTGAGTCTTTCCAGGTGATGAAG
AATCACTCCCTCACTCATTTTAGCTTGGGAGGTAACCGTCTGGTAGATAT
ACCACAAAAAGCCTTGAAGCCATTCGTGAGTATCAAACAGCTAGATCTTG
GTTACAACAACCTGGCACCAAAAGTATTGGCTACCATCTTTAATAACACC
AGGGGACTGGGGATTACAAATTGGACTTTGATGAACAATGCCTTGACTGA
ATTGACAAATGCCACATTCTTTCCACTCTTTGATGAAGAAGTCATCTACA
TTCGTTTAGACGGTAACAGTATATCTCAGCTTACAGACTATCTCTTTGCA
TACGTGCCTCAACTGCGCGTTCTTTCCTTAAAGAACAACCCGATTGAGAG
GCTATCAGCAAGAGTGTTTGCTGGTTGTGACAGATTACTACATCTAGGCT
TAAACAGTTTGGATTTGAGTGAAATTCCGTCAGGATCGTTCGAACCATTG
AAAAACTTGACCAAATTAAACCTGGATTCAAATATGATACATGAAGTCAG
AGACAGGGCGTTTGTATCGATTCCGAAGTTGAGGATCCTGTGGATGAATG
GAAACAGGATAGAAATGATTTGGAAAAATGCCTTCTCTGGTTTACATCAT
CTTGAAGATCTGAACTTGGGTGCAAATAACCTAAGGAACATTCCCTCTCG
TGCACTAAGAGTAATCGGCCCATCACTAAAGAAGCTGGACCTTTCCGCCA
ATCGCAACTTGAAAACGATTTCACCAAACTCCTTTAACAGACTGCATAAA
CTCGCGGTCTTAAAGCTTCAAAGTTGCCGCATAAGAAGTATAGGTAACAG
TACATTTGCAGGTCTTTATAACTTACAGCGACTAGACCTGTCCTATAACA
AGATTACGACAATTGATTCAGGTTCTTTCCATGATTTCTTGTCAATCAAA
GTGCTTAATCTAAACGACAACGTTCTTGGAAGTCATGAAAGTTCATCTCC
TTTTCGGAATCTGATTTCTCTTATCGAACTGCATTCTGATTATCAAAAGG
ACACGGCTGGAATATTTCCTGATGGTTACTTAGACGGTCTGACATCCCTT
CGGCTGCTCTCATTGAAGTCAGAGAAACTGATAACATTGGAAACCAAGAC
AGACAAAACCAGTATCTTTAAAAAACTTAAAGACCTGAGATACTTGCTGC
TGACCCAGAACAAAATCAGCCATCTCACGAGAGACACCTTTGCAGGGTTG
ACTAACCTCACGTACCTGTACCTCGGTTCTAACTCCATCAGGGCTCTCCC
GTTAGGTGTATTTAGAGATCAAGGTAGACTGCAATATCTGGAGCTTAGAT
ACAATGGAATTGTTACCCTGGCCCCCGAGGTCTTCAGTCCCTTGCAGTCA
CTAGTTATGCTCAATGTTTACAGCAACAGTCTGGCCTGTTCTTGTGCTAT
AGAATGGTTCAAAGACTGGATAGCTTCAAGCATGAATGTTACTACAGGTG
TACAAGGTGTCTACTTCGAAGCCTATAAAAACTACACCTGTGCATCACCA
AAAAGCTTAAGAAACAAACCTCTGATTGACATCAACTTTGACATACTTGG
CTGCAAGTCCAGATTGAACTTTTACATGGCAATAGGATCGAGCTGTACCA
TCTTGATCTTGATGATGACCATCACATTGACGTATCGATACCGTTGGTAC
GGACGATACGCCATGTTCCTACTCCGAGCCAAGTTCAACAAGTATGAACT
CATCAGAGAAGAGGAGGAGAACCCCAAGACGTACGATGCCTTTGTGGCAC
ACAAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000086 | genome | Sc0000086:394420..397459 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL76466_cuf0 |
| Biotype | protein_coding |
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