transcript:BL76248_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL76248_cuf0
Unique Nametranscript:BL76248_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL76248_cuf0

>transcript:BL76248_cuf0-protein ID=transcript:BL76248_cuf0-protein|Name=transcript:BL76248_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=143bp
PYCRYDALSPMHHGIEIKRSARNMADDHASSVNFVRSFGDSSQSAINVTA
TLTLQNGVKQEFCERVSQGGAVPKLKNVREALKAVRTASQDAVNQMVEEE
RRQPSTQQQITKDGEESDYDEDDDDENSEEKALSGTGKNVAND
Run BLAST on NCBI

mRNA from alignment at Sc0002174:198..627+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL76248_cuf0 ID=transcript:BL76248_cuf0|Name=transcript:BL76248_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=430bp|location=Sequence derived from alignment at Sc0002174:198..627+ (Branchiostoma lanceolatum)
GCCTTATTGTCGTTATGATGCTTTGTCTCCGATGCATCATGGGATAGAGA
TCAAGAGGTCAGCAAGAAACATGGCCGACGATCATGCTTCTTCCGTCAAT
TTTGTCCGATCTTTTGGTGATTCTTCCCAGTCTGCGATCAACGTTACGGC
AACGTTGACTCTCCAGAACGGAGTCAAGCAAGAGTTTTGCGAGAGGGTAT
CCCAAGGAGGCGCCGTACCCAAGCTAAAGAACGTGCGAGAGGCGTTGAAA
GCGGTGAGGACAGCTTCCCAAGACGCTGTCAATCAAATGGTGGAAGAAGA
AAGGAGACAACCATCAACCCAACAACAAATTACCAAGGACGGGGAAGAAA
GTGACTATGACGAAGACGACGATGATGAAAATTCTGAGGAAAAAGCATTG
AGTGGAACAGGCAAAAATGTTGCAAATGAT

Coding sequence (CDS) from alignment at Sc0002174:198..627+

>transcript:BL76248_cuf0 ID=transcript:BL76248_cuf0|Name=transcript:BL76248_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=429bp|location=Sequence derived from alignment at Sc0002174:198..627+ (Branchiostoma lanceolatum)
CCTTATTGTCGTTATGATGCTTTGTCTCCGATGCATCATGGGATAGAGAT
CAAGAGGTCAGCAAGAAACATGGCCGACGATCATGCTTCTTCCGTCAATT
TTGTCCGATCTTTTGGTGATTCTTCCCAGTCTGCGATCAACGTTACGGCA
ACGTTGACTCTCCAGAACGGAGTCAAGCAAGAGTTTTGCGAGAGGGTATC
CCAAGGAGGCGCCGTACCCAAGCTAAAGAACGTGCGAGAGGCGTTGAAAG
CGGTGAGGACAGCTTCCCAAGACGCTGTCAATCAAATGGTGGAAGAAGAA
AGGAGACAACCATCAACCCAACAACAAATTACCAAGGACGGGGAAGAAAG
TGACTATGACGAAGACGACGATGATGAAAATTCTGAGGAAAAAGCATTGA
GTGGAACAGGCAAAAATGTTGCAAATGAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL76248gene:BL76248Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL76248_cuf0-E1BL76248_cuf0-E1-1564476830-512173Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL76248_cuf0transcript:BL76248_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0002174genomeSc0002174:198..627 +
Properties
Property NameValue
Transcript idBL76248_cuf0
Biotypeprotein_coding