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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL76152_cuf1 >transcript:BL76152_cuf1-protein ID=transcript:BL76152_cuf1-protein|Name=transcript:BL76152_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=322bp
MNERSSDIAMNDQPTLHPGNGANSSERLDIGKQQDKAGDIPCGETCGVKS
DHHPVQGQTEQRNRLVVKRNVAKRFVCTECGYRAASNANLLIHTRIHTGE
KPYKCDQCDYSAAQKRSLDLHLTKHTGEKPYMCEECGYRAAFRSHLSKHM
RRHTGVKPYKCDQCHYSAASKCNLAQHIAKHIAVKPYKCDQCEYSAAWKS
SVDRHMVRHTGKKPYICGECGYRAAAKFSLTVHMMTHTGVKPYKCEQCDY
SAVRKNQLGQHMATHTGEKPYMCDECKYRTAHMSHLYRHMRKHTGEKPYK
CNQCDYSATKKLYLNQHLVKHT Run BLAST on NCBI mRNA from alignment at Sc0000042:814391..816860+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL76152_cuf1 ID=transcript:BL76152_cuf1|Name=transcript:BL76152_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2470bp|location=Sequence derived from alignment at Sc0000042:814391..816860+ (Branchiostoma lanceolatum)
TTTCAGCTTCCAGATGAGTTTGGCAGATGCTATTTAGTTCTAGGACAGGT
TACAGCACTATTGAGAACATTTAAACGCACCCTTGGAGCAGCGTGATGCG
TTACATCGTTATTGGCAGTATGGTGTAATCAGGTATGTAAACTCTGACCT
TCGACCTTCACAGCAAAGCACAGTCTGCCTGCCTGTCCGCCATTTTGGTT
TGTCGGAGCATTACGAGCACGATTCCTTTGTTTCCAAGACAATTCAACAC
GTTAGCAATTCACAAACTGCCAGGTAAGACATGTGTTAACTGCGTATCCT
CTGTATGTTTAAATATTCTTATGTACTTTAGAAAAACATTTTACTGTAAA
ATTAGTGATTGCTTTGTAAGGGGAGGGGGCATTACGAAGTAAACTAACTG
TGGACATCGACAAGCAGCGTTGACGGTTTGATATTTTGCATTGTAGAATT
CTGAAGTATTTTATATCCTGTGGGTGCGGGGGCTCTTGGTAAGTCATTGA
CACGACTTATTTGTACGTGTGTGTTAGTCACGAGTGTGTGTGTGAAAACG
TGTTTGTTCGTGTATGTATGTATGTCTGTGTTTGTGTGTTTGCAAGTGTG
TGTGTGTGAGTGTGCATGCATGCATGTGTACGTGTGTGTGTGTGTGTGTG
TGTGTGTGACCAAATGATACGGAACACGCCATGTTGTATTCTATTAGCCT
GGATTCCAGCCATCTTAGATTTAGTCCGCTCTTGGCAGGGAGCTGAGCTA
GGGTAGCGGACTTAAGCTAAGAAGGCTGGACTCCAGGCTAGTATTCTACG
TACAACAAGGCATCAATCAACATAGTAATACCCCCAGATGACCCAGCGAG
GGGTAAAGTAGGGAGGAGGGGGGCAAGTACTAAGTATGTATACGATTGGA
ATGTTTGCTATCTTTTAATTTTTGATAGTTTATTATCGTTGTTGTTCTTA
GAAATGAACGAGAGAAGCAGCGACATTGCAATGAACGATCAACCAACTCT
ACACCCTGGTAACGGGGCAAACAGCAGCGAGAGGTTGGACATTGGAAAAC
AGCAGGACAAGGCGGGGGATATCCCATGCGGGGAAACATGCGGAGTAAAA
TCTGACCATCATCCCGTACAGGGTCAAACAGAGCAGAGGAACAGGCTTGT
GGTGAAACGCAATGTGGCCAAACGCTTCGTGTGTACGGAATGTGGCTATA
GGGCTGCCTCGAATGCTAACCTATTAATACACACACGAATACATACGGGG
GAGAAACCATATAAATGTGACCAGTGCGACTATTCAGCTGCACAGAAACG
TTCTTTAGACCTTCATCTTACTAAACACACCGGCGAAAAACCATACATGT
GTGAAGAGTGTGGATACAGGGCGGCTTTCAGGTCTCACCTATCCAAACAT
ATGAGAAGACATACAGGTGTGAAACCATATAAATGTGACCAATGCCATTA
TTCTGCTGCATCTAAATGTAATTTAGCCCAACATATAGCTAAACACATCG
CTGTAAAGCCGTACAAATGTGATCAGTGCGAATATTCTGCTGCATGGAAA
AGCAGTGTTGACCGACACATGGTCAGGCACACCGGAAAAAAGCCCTACAT
ATGTGGCGAGTGCGGGTACAGGGCGGCAGCCAAGTTTTCCTTAACCGTAC
ATATGATGACACATACTGGTGTGAAACCTTATAAGTGCGAGCAGTGCGAC
TACTCTGCTGTACGAAAAAATCAGTTAGGCCAACACATGGCTACACATAC
TGGAGAAAAACCCTACATGTGCGATGAGTGCAAATACAGGACTGCTCACA
TGTCTCACCTATATCGACATATGAGAAAACATACAGGTGAGAAACCCTAC
AAATGTAACCAATGCGACTATTCTGCTACAAAGAAACTCTATTTGAACCA
ACACTTGGTCAAACACACTTAGAGATACAGTTGCGGGGCTTGTGGATACA
GTACGGAAGTCTAACCTTTCCAGGTACATGCCAGGTGATCAGTTCGACTA
TTGTGTTTAATTGAAAAGTAGTTTAGACCTAACTTGAAACTTAATCTTGT
TGATAGACGGCATTCTGGATCAAAGTCAAACTGTACATTTCCAACACAAA
AGTAGAAATTTGTTTGTAAGTTAAGTTGAAATTCTGTATATCTTTTGTTT
TGATTTTGTATATATGTTGCTTTTAATCTTGCAGTCTGTATGTATGTCTG
TATTTAAAAGTATGCTGAACCCTGTACAACAACAAAAAGCAAAAAATTCG
ACTAGCCAATCCAGTCTTTGTCTGGTTTCATGATTTATACATTGAACTTT
GCAGTGAGATCACTGAATTACATTCAATGTACAAATAAGAATGTAGAAGC
TTACAATATTGCACATTTCGAAGTAAATAATAGAATTTTTAAGATTATTC
CACATTTCCCCACACAGAATGAATAACACAGACATATATTCCACATTACT
TGAATAAAGTAATATGTATG Coding sequence (CDS) from alignment at Sc0000042:814391..816860+ >transcript:BL76152_cuf1 ID=transcript:BL76152_cuf1|Name=transcript:BL76152_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=969bp|location=Sequence derived from alignment at Sc0000042:814391..816860+ (Branchiostoma lanceolatum)
ATGAACGAGAGAAGCAGCGACATTGCAATGAACGATCAACCAACTCTACA
CCCTGGTAACGGGGCAAACAGCAGCGAGAGGTTGGACATTGGAAAACAGC
AGGACAAGGCGGGGGATATCCCATGCGGGGAAACATGCGGAGTAAAATCT
GACCATCATCCCGTACAGGGTCAAACAGAGCAGAGGAACAGGCTTGTGGT
GAAACGCAATGTGGCCAAACGCTTCGTGTGTACGGAATGTGGCTATAGGG
CTGCCTCGAATGCTAACCTATTAATACACACACGAATACATACGGGGGAG
AAACCATATAAATGTGACCAGTGCGACTATTCAGCTGCACAGAAACGTTC
TTTAGACCTTCATCTTACTAAACACACCGGCGAAAAACCATACATGTGTG
AAGAGTGTGGATACAGGGCGGCTTTCAGGTCTCACCTATCCAAACATATG
AGAAGACATACAGGTGTGAAACCATATAAATGTGACCAATGCCATTATTC
TGCTGCATCTAAATGTAATTTAGCCCAACATATAGCTAAACACATCGCTG
TAAAGCCGTACAAATGTGATCAGTGCGAATATTCTGCTGCATGGAAAAGC
AGTGTTGACCGACACATGGTCAGGCACACCGGAAAAAAGCCCTACATATG
TGGCGAGTGCGGGTACAGGGCGGCAGCCAAGTTTTCCTTAACCGTACATA
TGATGACACATACTGGTGTGAAACCTTATAAGTGCGAGCAGTGCGACTAC
TCTGCTGTACGAAAAAATCAGTTAGGCCAACACATGGCTACACATACTGG
AGAAAAACCCTACATGTGCGATGAGTGCAAATACAGGACTGCTCACATGT
CTCACCTATATCGACATATGAGAAAACATACAGGTGAGAAACCCTACAAA
TGTAACCAATGCGACTATTCTGCTACAAAGAAACTCTATTTGAACCAACA
CTTGGTCAAACACACTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000042 | genome | Sc0000042:814391..816860 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL76152_cuf1 |
| Biotype | protein_coding |
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