transcript:BL76048_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL76048_cuf0
Unique Nametranscript:BL76048_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL76048_cuf0

>transcript:BL76048_cuf0-protein ID=transcript:BL76048_cuf0-protein|Name=transcript:BL76048_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=121bp
XISKHTNTNKRLYACFVDFRKAFDCVWREGLRYKLLSSGIGGKFYSLLTS
MYSNPKTCVKTSTGLTPLFTTDRGVKQGCNLSPTLFNLFINDLVKELDNP
DCEPPLYTIYLFLVYYMLMMS
Run BLAST on NCBI

mRNA from alignment at Sc0000724:30483..31204-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL76048_cuf0 ID=transcript:BL76048_cuf0|Name=transcript:BL76048_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=722bp|location=Sequence derived from alignment at Sc0000724:30483..31204- (Branchiostoma lanceolatum)
NNTAATATCTAAACACACCAATACTAACAAACGTTTATATGCATGTTTTG
TAGATTTTAGAAAAGCATTTGACTGTGTGTGGAGAGAGGGACTCCGTTAC
AAATTACTAAGTTCGGGAATAGGTGGTAAATTCTATAGTTTACTTACATC
AATGTATTCTAATCCAAAGACCTGCGTCAAAACCTCTACGGGTCTTACAC
CATTATTCACTACTGATAGAGGCGTGAAACAGGGATGTAACCTCTCTCCC
ACACTTTTTAACTTATTCATAAATGATTTAGTCAAAGAATTAGATAATCC
CGACTGTGAACCCCCACTCTACACAATCTACTTGTTCCTTGTTTATTATA
TGCTGATGATGTCGTGATATTTTCAGAGTCGGAAAAAGGATTACAACGTG
CCTTGGACAGACTGAACATATTCTGTACAAAATGGAAACTACAATTAAAC
ATGAAGAAAACTAAAGTTGTAATTTTCAACAAATCTGGACGATCAGTAAA
AAATGTGAAATTTTCCTTTGGCTCAGATACTATTGAAATAACTAATTCTT
ATTGTTTTCTGGGACTATTGTTGTCCTCATCAGGCACTTTTTCCTTAGCA
AAAAAACAGTTGNAATTCTTATTGTTATCTGGGACTATTGTTGTCCTCAT
CAGGCACTTTTTCCTTAGCAAAAAAACAGTTGTCCTTAAAAGCACGCAAA
GCCCTTTTCAGTCTCAAACCGC

Coding sequence (CDS) from alignment at Sc0000724:30483..31204-

>transcript:BL76048_cuf0 ID=transcript:BL76048_cuf0|Name=transcript:BL76048_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=366bp|location=Sequence derived from alignment at Sc0000724:30483..31204- (Branchiostoma lanceolatum)
NTAATATCTAAACACACCAATACTAACAAACGTTTATATGCATGTTTTGT
AGATTTTAGAAAAGCATTTGACTGTGTGTGGAGAGAGGGACTCCGTTACA
AATTACTAAGTTCGGGAATAGGTGGTAAATTCTATAGTTTACTTACATCA
ATGTATTCTAATCCAAAGACCTGCGTCAAAACCTCTACGGGTCTTACACC
ATTATTCACTACTGATAGAGGCGTGAAACAGGGATGTAACCTCTCTCCCA
CACTTTTTAACTTATTCATAAATGATTTAGTCAAAGAATTAGATAATCCC
GACTGTGAACCCCCACTCTACACAATCTACTTGTTCCTTGTTTATTATAT
GCTGATGATGTCGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL76048gene:BL76048Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL76048_cuf0-E1BL76048_cuf0-E1-1564476830-495697Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL76048_cuf0transcript:BL76048_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000724genomeSc0000724:30483..31204 -
Properties
Property NameValue
Transcript idBL76048_cuf0
Biotypeprotein_coding