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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL76009_cuf1 >transcript:BL76009_cuf1-protein ID=transcript:BL76009_cuf1-protein|Name=transcript:BL76009_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=219bp
KTLVRFCGGKNRHWRFNMAEAAVGSPTDVSQNSSHGSPAKVSWCRGTRGV
EDLSTGTKTSLHNQPKAHTDDKKPYICEECGYRTSQKYNLFEHMRIHTGE
KPYNCDQCDYSAAKKSSLDYHQAKHTGKKPYMCEECGYRTVQKSTLSEHM
RTHTGERPYKCDKCDYAATKKSTLASHLAKHSGEKPYMCGECGYRTTQKS
HLNQHLRIHTGEKPYRCEH Run BLAST on NCBI mRNA from alignment at Sc0000164:15461..20115+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL76009_cuf1 ID=transcript:BL76009_cuf1|Name=transcript:BL76009_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4655bp|location=Sequence derived from alignment at Sc0000164:15461..20115+ (Branchiostoma lanceolatum)
AGAAAACGCTTGTAAGATTTTGTGGAGGTAAAAATCGGCACTGGAGGCAG
GTAAGAACGTGAAATATACAAAATGACTGTCATGGCGTAAAGTTTAGTAG
GTATAGGTAATTTTTCTGGTAAATGAGTCACATTAGTACGAAAATGTAAG
ACTTTTCTGGCTAAGAAAAATGGGAGGGAGGGGCGATTAAGCAAACTGTG
AGTGAGGCATACGCAACATATTGCAGGGCTTACCTCAGATTTGCGTTGCG
CAGTGGTGAGCGTGAAGAAGAATTTTTAAGGTAGAATTAAGAAACTAAGA
TAAGTTCCTTTTCTCAGTACTCCATATTCTGAGCTTTGACGTCAGCCAAA
AAGTAACAACGCCCCCCCCCCTCCCGAGTAATGTAGCAGTTTCTTAATGA
CTTAGTTTTACATGTTAGTTACAGATTACCGATATTTGATCAAAAACAGA
CTGGACAGAAAAATGGACATCCCTTAGTACAAATGTATTAAATTTTCTCA
ACATTTTGATCGTTTTCAGACATATGATATATTGTGACCTTGCTATTTTT
CCAAAATACCAACTTAGTCCTTTGTCATTGGTCCATATTTAAGTCACCAT
ATGTTACAGGTAACTCATGCATACTATAAAATACCGTAATGTTGTTTTTT
TCCAAACTAGTTAAAAAAACAGAGATGCTTTGGGATTAGGACTGTTCCCA
TTACACTAGCAGGGAGAGTACGCTGCTAAATAGAGGACAGATTACACATA
ATTACAGAGCCATCAATGAATAATAGATATCCAGGTAGCAAGATCTGCAA
GATAACAGTACTGTTACTATCACCACAATGAGACAGAACTACATAATAGA
AACACTTGAGAAGGGCAAACAAATATCCAGGTCATACATGTGTGGCAAAC
GTTTACAAATTATTATTTGTATAGATTGATGATTGCTGGGACTGGACTGT
TCCAAATAAAACATGTGAAGAGGGGGTGTTACGTTTGGATTCTATGGATT
AGGTATAGAAAAGACAGGATTAGATGTGTGTACCCTTTCTGGGCCCTAAG
GCTATACATGCCCTTTATTACTAGTAATGGAATTTAATTGAGAAAAAACT
GGGTCCCGGGACAGCACTGTTCATGTTATCGACAGCCTCCATAGTTTGTC
CCTTAAAAGTCCTCAAAAAGATTTTAGAGGGGTGAATTAACATTTTTTTT
TGAGTGGGGTGCCCCGGACACACTTACTAAGAGAGAGTTTGTATGCATGT
TGGCCCTGTATGTTTGATTTTGTGTGTCCATGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTGTGCGCGTG
TGAGAGTTTGTTTGTGTGTGTGTACATATGTGTGTGTACATGTATGTTTG
TGTGCGTGTGTACATTGTATAGTGTTTCTGTTATTCCTGTCTTTCCGTCA
AGATTGTACATTGACTAACATCCACCCTGCTCCTTGTAGGCCTGACTGCC
AATAACAGCACAGTGCCTTCCATGTTAGAAAAAACAAACCCTGGGGGTTC
ATGTACAGTGGGTACACCCCTACTAGCAGGGCTCGAAATAGTGGGTGCAA
ACCGCCATGCATATTCTTGTGGCCCAGAATGGGTACGTAGCCCACCCCAC
TAGCAAACGCCCCCCCCCCCTTTCCGGAAAGCCATTATATGTTTAAGGTA
GCCTTAAGCAAGGTTCTGCACTAGGGTAGAGTGTGAGCAATTAATGATTA
GAACTAGGGAAGAATTGGACCAAATCTTTATTGGCATTAAGTATATCTAG
ATTAGAACTAGGGTAGGGTTTGAGTAAATATGGACTGGAAATAGGGTAGG
GTGGGGGTATATCTGGATTGGAACTAGGATAGGATTTGAGTAAATATGGA
TTGGAAATAGGGTAGGGTTTGAGTAAAAATGGATTGGAAGTAGGGTAGGG
TGTAAGTAAATACGGATTGGAAGTAGGGTATGGTTTGAGTAAATATGGAT
TAGAACTAGGGTAGGGTTTTAGTAAATATGGATTTTTTTTAAACTATAAA
AAAACTAGGGTCGGGTTTGAGTAAATATGGATTAGAACTAGGGTCGGGTT
TGAGTAAATATGGATTGAAAGTAGTGTAGGGTTTCAGTGAATCTAGATTG
GAACTAGTGTAGGGTTTAAGTGAATCTAGATCGGAACTAGGGTAGGGTTA
GAGTATATCTAGATTGGAACTAGGGTAGGATGTGAGTAAATACGGATTGA
AACTGGGGTAGTGTTTGAGTACATCTAGATTGGAAGTAAGGAAGGGTTTA
TCAAATCAGGATTGAAATAGGGTATTGGGTCTGAGCTAATCGAAATTGGA
AGTGGGTAGGTAATAAGTTCATTTTGGACCTCTTACACCCCCTCCTTTTA
CTTTTTTGAAACAACCCAATAAGGGAGGGGCAGTAAGAAACCAGTGGGTC
ATGTTCTAATGTAATTACAATGGGAGTGGAAAATGGACACATATGTAAGT
AACTTCCATTTTTTATCAGCATTAAAAAAGGACTTCTACCTAATTACATC
ATTGATTGACATTATTTTAAATCTTTATCCATTAGGTTTAACATGGCAGA
GGCGGCTGTTGGGTCTCCTACTGATGTTTCTCAGAACTCCAGTCATGGGT
CTCCTGCTAAAGTTTCATGGTGCAGAGGTACAAGAGGTGTTGAAGATTTG
TCAACAGGAACAAAAACTAGTTTGCACAATCAGCCAAAAGCACATACTGA
TGATAAGAAACCCTACATCTGTGAGGAGTGTGGGTACAGGACATCTCAAA
AGTATAACCTATTCGAACATATGAGGATTCATACAGGTGAAAAACCCTAC
AATTGTGACCAGTGTGATTATTCAGCAGCAAAGAAAAGCAGTTTGGATTA
TCATCAAGCCAAGCACACTGGTAAGAAACCCTACATGTGTGAGGAGTGCG
GGTACAGGACAGTTCAGAAGTCTACCTTATCCGAACATATGAGAACTCAT
ACCGGTGAGAGACCCTACAAGTGTGACAAGTGCGATTACGCTGCCACAAA
GAAATCCACTTTGGCCAGCCATCTAGCAAAACACTCTGGTGAAAAACCCT
ACATGTGTGGGGAGTGTGGGTACAGGACAACTCAAAAGTCTCACTTAAAC
CAACATCTTAGAATCCATACCGGTGAAAAACCCTACAGGTGTGAGCATTG
AGATTATTCTGCTGCAACGAAAACCACATTACATCGTCATCTAGCCAAAC
ATACTGTTGACAAAGCCTACATGTGTAGAGAGTGCGGGTACAGGACAAAT
CACAAGTCTCACTTTTCCCAACATGTTAAAACACATGCTGGTGAAAAACC
CTACAAGCGTGATTATTCTACAGCAAAGAAACCAACCTTAGACAGCCATT
TAGCAAAACACACTGGTAAACCTCATATATGTGGGACGTGTGGATACAGG
GCAGCACAAAAGTATACGTTATCGGAACATATGAGAATTCATACTGGTGA
AAGACCCTACAAGTGTGAGCAATGTGATTATTCTGCTACAGCGAAATCCA
CACTTGCCCGCCATTTACTTAAACATACTGGTGAGAAACCCTACATGTGT
GGGGAGTGCGGGTACAGGGCAGCTCGGAAGTCCCACCTATTCGAACACAT
GAGAACTCATACTGGTGAAAAACCCTACAAGTGTGACCAGTGCGATTATT
CTGCTGCACAGAGTTCTACCTTGTCCGCCCATCTAGCCAATCACTCTGGT
GTAAAACGCTATATTTGTGAAGAGTGCGGGTACAGGACAAATTGGAAGTC
TCATTTAGCAAAACATATGAGAACTCATACCAGGGAAAAACCTTTAAAAA
ATTGACCAATTTAATTATTCTGATGCACAGAAATATCCTCCCTGGCCATC
CGCCCTAGCCAAACACGCTCTCCCTGCGTGGGGTGTGTTGGTACAGCACA
TTTTTTTACTCAAAGGGCTACCTTAGTCCAACATATGAGAAATCAAGCAT
ACTGCTGAAAAACCATACGTGGGATCATTTTCACTTTTCTTCAACAAAGA
AAAGAAATATTGTGCATAAACTTTCAAGTGACAGGAGGGAGGGTATTGTT
TTTTTTAGAAGTCTCTTTTTACCCTAAAAATTGTGTTTTGATTTACTATT
ATACATCATTTTGCCTCTGACCTCTTCCACTCCGAGTTTAGGTTTAAGTT
TTCTTTGTCACGTTTTCTGGTAATTTCAAATGTACATTTTGTTGTATAGT
ATGCTGTACATTTGATTGATCTTATTNATATTTGATTGATCATATTGTAC
CTTGACGTGTTATTTGTCTGGCTTTGAGCTCAACTTATGTTTGTATTCTG
TTTATTGAAATGCCTAATTTGTTGTACTCTTCCGTTGCTATAATTTGTAT
AATTTTGATATGGACTCCAGGAAGAATAGTGATGTATCACTAACAGAGAT
CAAAATAAATCAAACCAAATCCAGAATTAGGAGAAACTTTTCAAGTGTGA
TTATTTAGCAGCACGAAGATTCTCTGTCATATTGCTAAACACACAGATGG
TAAATCTTGGACGCGTAAAAAAAAGAGGTTATCTTAAATAAAAGCCGCTA
AGAACTCACACATGTGAATACCCCAACAAGTGTGACCAGCGTGATTATTC
TGCAG Coding sequence (CDS) from alignment at Sc0000164:15461..20115+ >transcript:BL76009_cuf1 ID=transcript:BL76009_cuf1|Name=transcript:BL76009_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1320bp|location=Sequence derived from alignment at Sc0000164:15461..20115+ (Branchiostoma lanceolatum)
AAAACGCTTGTAAGATTTTGTGGAGGTAAAAATCGGCACTGGAGGTTTAA
CATGGCAGAGGCGGCTGTTGGGTCTCCTACTGATGTTTCTCAGAACTCCA
GTCATGGGTCTCCTGCTAAAGTTTCATGGTGCAGAGGTACAAGAGGTGTT
GAAGATTTGTCAACAGGAACAAAAACTAGTTTGCACAATCAGCCAAAAGC
ACATACTGATGATAAGAAACCCTACATCTGTGAGGAGTGTGGGTACAGGA
CATCTCAAAAGTATAACCTATTCGAACATATGAGGATTCATACAGGTGAA
AAACCCTACAATTGTGACCAGTGTGATTATTCAGCAGCAAAGAAAAGCAG
TTTGGATTATCATCAAGCCAAGCACACTGGTAAGAAACCCTACATGTGTG
AGGAGTGCGGGTACAGGACAGTTCAGAAGTCTACCTTATCCGAACATATG
AGAACTCATACCGGTGAGAGACCCTACAAGTGTGACAAGTGCGATTACGC
TGCCACAAAGAAATCCACTTTGGCCAGCCATCTAGCAAAACACTCTGGTG
AAAAACCCTACATGTGTGGGGAGTGTGGGTACAGGACAACTCAAAAGTCT
CACTTAAACCAACATCTTAGAATCCATACCGGTGAAAAACCCTACAGGTG
TGAGCATTGAAAAACGCTTGTAAGATTTTGTGGAGGTAAAAATCGGCACT
GGAGGTTTAACATGGCAGAGGCGGCTGTTGGGTCTCCTACTGATGTTTCT
CAGAACTCCAGTCATGGGTCTCCTGCTAAAGTTTCATGGTGCAGAGGTAC
AAGAGGTGTTGAAGATTTGTCAACAGGAACAAAAACTAGTTTGCACAATC
AGCCAAAAGCACATACTGATGATAAGAAACCCTACATCTGTGAGGAGTGT
GGGTACAGGACATCTCAAAAGTATAACCTATTCGAACATATGAGGATTCA
TACAGGTGAAAAACCCTACAATTGTGACCAGTGTGATTATTCAGCAGCAA
AGAAAAGCAGTTTGGATTATCATCAAGCCAAGCACACTGGTAAGAAACCC
TACATGTGTGAGGAGTGCGGGTACAGGACAGTTCAGAAGTCTACCTTATC
CGAACATATGAGAACTCATACCGGTGAGAGACCCTACAAGTGTGACAAGT
GCGATTACGCTGCCACAAAGAAATCCACTTTGGCCAGCCATCTAGCAAAA
CACTCTGGTGAAAAACCCTACATGTGTGGGGAGTGTGGGTACAGGACAAC
TCAAAAGTCTCACTTAAACCAACATCTTAGAATCCATACCGGTGAAAAAC
CCTACAGGTGTGAGCATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000164 | genome | Sc0000164:15461..20115 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL76009_cuf1 |
| Biotype | protein_coding |
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