transcript:BL72985_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL72985_cuf0
Unique Nametranscript:BL72985_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL72985_cuf0

>transcript:BL72985_cuf0-protein ID=transcript:BL72985_cuf0-protein|Name=transcript:BL72985_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=107bp
FACCKKKKKITSSKATQNSGTCRLRLPQKASIVPAYRKTGGVCGLVCHRC
WLGGFCVCTVVREDRGGHAASIAKTISNTTYPEWLSHVSFATMRDMGEEL
RDWQRDL
Run BLAST on NCBI

mRNA from alignment at Sc0000382:37639..38260+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL72985_cuf0 ID=transcript:BL72985_cuf0|Name=transcript:BL72985_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=622bp|location=Sequence derived from alignment at Sc0000382:37639..38260+ (Branchiostoma lanceolatum)
TTTCGCCTGTTGTAAAAAAAAAAAAAAAATCACCTCCTCCAAGGCTACAC
AGAACTCCGGAACTTGCCGACTTAGATTGCCGCAAAAGGCTAGCATTGTG
CCGGCTTATCGGAAAACTGGGGGCGTATGTGGATTGGTATGCCATCGATG
TTGGCTAGGGGGATTTTGCGTTTGCACAGTTGTACGAGAGGATCGCGGCG
GCCATGCAGCGAGTATCGCCAAGACAATTTCAAACACGACCTATCCAGAG
TGGCTCTCACACGTTTCTTTTGCAACAATGAGAGACATGGGAGAGGAATT
GAGGGATTGGCAGAGGGATTTGTGAGCGTAAACCATGGAATGCTTAATAT
GGAGTTCAATGCCATGTATGTTGAAACTGCCCTTATGGGTGTATATGAGT
ATTCTCATCACAGTCATATATCATCCACAGTCCTCGGAGCCAAATACCTT
CTAATAGTCTGCTATGATGAACAAAACAACCTACATGTACCTCCTACAAA
CAAACTGTGTTCTGTGGTTCAATTCGCAATACCAGCTTTGTACTAGTACT
AGTTGCCCTGTGGTTTAGCAGCATTTTTTTTGCTGGATTTTTCTTTTTTT
CGCCCGCGCGCATTAGTTTTGG

Coding sequence (CDS) from alignment at Sc0000382:37639..38260+

>transcript:BL72985_cuf0 ID=transcript:BL72985_cuf0|Name=transcript:BL72985_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=324bp|location=Sequence derived from alignment at Sc0000382:37639..38260+ (Branchiostoma lanceolatum)
TTCGCCTGTTGTAAAAAAAAAAAAAAAATCACCTCCTCCAAGGCTACACA
GAACTCCGGAACTTGCCGACTTAGATTGCCGCAAAAGGCTAGCATTGTGC
CGGCTTATCGGAAAACTGGGGGCGTATGTGGATTGGTATGCCATCGATGT
TGGCTAGGGGGATTTTGCGTTTGCACAGTTGTACGAGAGGATCGCGGCGG
CCATGCAGCGAGTATCGCCAAGACAATTTCAAACACGACCTATCCAGAGT
GGCTCTCACACGTTTCTTTTGCAACAATGAGAGACATGGGAGAGGAATTG
AGGGATTGGCAGAGGGATTTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL72985gene:BL72985Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL72985_cuf0-E1BL72985_cuf0-E1-1564476830-453395Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL72985_cuf0transcript:BL72985_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000382genomeSc0000382:37639..38260 +
Properties
Property NameValue
Transcript idBL72985_cuf0
Biotypeprotein_coding