transcript:BL72970_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL72970_cuf0
Unique Nametranscript:BL72970_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL72970_cuf0

>transcript:BL72970_cuf0-protein ID=transcript:BL72970_cuf0-protein|Name=transcript:BL72970_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=144bp
YCVADVTDPSDIKPKWRDYFTKAVSFSVMHWIHDKCNALVNIYSCLKPNG
IVLFNCFSDTSSIVQTIRAVENDTRWRNLVKSRGFTYTIYPWLESDVAGL
KRLIEGCGFEVEVCRSRRQRVKIPCEEIFRASIRPFLPHFDYMP
Run BLAST on NCBI

mRNA from alignment at Sc0000009:2825021..2825454+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL72970_cuf0 ID=transcript:BL72970_cuf0|Name=transcript:BL72970_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=434bp|location=Sequence derived from alignment at Sc0000009:2825021..2825454+ (Branchiostoma lanceolatum)
CCTACTGTGTTGCAGACGTCACAGATCCGTCTGATATCAAACCAAAATGG
CGGGACTATTTCACCAAGGCCGTCTCTTTCTCCGTCATGCATTGGATTCA
CGACAAATGTAACGCCTTAGTCAACATTTATTCCTGTCTAAAACCTAACG
GAATCGTCCTGTTCAACTGTTTCTCTGATACTTCATCAATTGTCCAGACA
ATAAGAGCCGTTGAAAACGACACAAGATGGCGAAATCTCGTGAAATCTCG
CGGATTCACGTACACGATATATCCGTGGCTTGAAAGTGACGTAGCCGGTT
TGAAACGTTTGATAGAAGGATGTGGCTTTGAAGTTGAAGTTTGTCGTTCT
CGTCGACAGAGAGTAAAAATTCCCTGTGAGGAAATATTCAGAGCTTCTAT
ACGCCCGTTTCTGCCTCATTTTGACTACATGCCG

Coding sequence (CDS) from alignment at Sc0000009:2825021..2825454+

>transcript:BL72970_cuf0 ID=transcript:BL72970_cuf0|Name=transcript:BL72970_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=432bp|location=Sequence derived from alignment at Sc0000009:2825021..2825454+ (Branchiostoma lanceolatum)
TACTGTGTTGCAGACGTCACAGATCCGTCTGATATCAAACCAAAATGGCG
GGACTATTTCACCAAGGCCGTCTCTTTCTCCGTCATGCATTGGATTCACG
ACAAATGTAACGCCTTAGTCAACATTTATTCCTGTCTAAAACCTAACGGA
ATCGTCCTGTTCAACTGTTTCTCTGATACTTCATCAATTGTCCAGACAAT
AAGAGCCGTTGAAAACGACACAAGATGGCGAAATCTCGTGAAATCTCGCG
GATTCACGTACACGATATATCCGTGGCTTGAAAGTGACGTAGCCGGTTTG
AAACGTTTGATAGAAGGATGTGGCTTTGAAGTTGAAGTTTGTCGTTCTCG
TCGACAGAGAGTAAAAATTCCCTGTGAGGAAATATTCAGAGCTTCTATAC
GCCCGTTTCTGCCTCATTTTGACTACATGCCG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL72970gene:BL72970Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL72970_cuf0-E1BL72970_cuf0-E1-1564476830-90876Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL72970_cuf0transcript:BL72970_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000009genomeSc0000009:2825021..2825454 +
Properties
Property NameValue
Transcript idBL72970_cuf0
Biotypeprotein_coding