transcript:BL72956_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL72956_cuf0
Unique Nametranscript:BL72956_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL72956_cuf0

>transcript:BL72956_cuf0-protein ID=transcript:BL72956_cuf0-protein|Name=transcript:BL72956_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=174bp
LPVRIRQDLWHFRTVYGSVSVENTSFSDSSGNIPDPGAEIFGSVMLDSSV
SVSIRQKYRKIPVHICQDLWHFRTMYGSVFVENTLLSDSSGNIPYPSAHL
VGSVRLDPPVSVSIRQKYRKFPVRIRQDRWHFRAVYGSVFVENTLLSDSS
GNIPYTGAEIVGYLTRIRMYPSVS
Run BLAST on NCBI

mRNA from alignment at Sc0001244:113..635+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL72956_cuf0 ID=transcript:BL72956_cuf0|Name=transcript:BL72956_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=523bp|location=Sequence derived from alignment at Sc0001244:113..635+ (Branchiostoma lanceolatum)
ACTTCCTGTACGTATCCGTCAGGATCTCTGGCATTTCCGTACAGTGTACG
GCTCCGTATCCGTCGAAAATACCTCATTTTCGGATTCCTCCGGAAATATT
CCCGATCCCGGTGCGGAAATTTTCGGATCCGTTATGTTGGATTCGTCAGT
ATCCGTCAGTATCCGCCAAAAATACAGAAAAATCCCTGTTCACATCTGTC
AGGATCTGTGGCATTTCCGTACAATGTACGGCTCCGTATTCGTCGAAAAT
ACCTTACTTTCGGATTCTTCCGGAAATATTCCATATCCCAGTGCGCATTT
AGTCGGATCCGTCAGGTTGGATCCGCCTGTATCCGTCAGTATCCGCCAAA
AATACAGAAAATTTCCTGTTCGTATCCGTCAGGATCGGTGGCATTTCCGT
GCAGTGTACGGCTCCGTATTCGTCGAAAATACCTTACTTTCGGATTCTTC
CGGAAATATTCCATATACCGGTGCGGAAATAGTCGGATACCTTACACGAA
TCCGCATGTATCCGTCAGTATCC

Coding sequence (CDS) from alignment at Sc0001244:113..635+

>transcript:BL72956_cuf0 ID=transcript:BL72956_cuf0|Name=transcript:BL72956_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=522bp|location=Sequence derived from alignment at Sc0001244:113..635+ (Branchiostoma lanceolatum)
CTTCCTGTACGTATCCGTCAGGATCTCTGGCATTTCCGTACAGTGTACGG
CTCCGTATCCGTCGAAAATACCTCATTTTCGGATTCCTCCGGAAATATTC
CCGATCCCGGTGCGGAAATTTTCGGATCCGTTATGTTGGATTCGTCAGTA
TCCGTCAGTATCCGCCAAAAATACAGAAAAATCCCTGTTCACATCTGTCA
GGATCTGTGGCATTTCCGTACAATGTACGGCTCCGTATTCGTCGAAAATA
CCTTACTTTCGGATTCTTCCGGAAATATTCCATATCCCAGTGCGCATTTA
GTCGGATCCGTCAGGTTGGATCCGCCTGTATCCGTCAGTATCCGCCAAAA
ATACAGAAAATTTCCTGTTCGTATCCGTCAGGATCGGTGGCATTTCCGTG
CAGTGTACGGCTCCGTATTCGTCGAAAATACCTTACTTTCGGATTCTTCC
GGAAATATTCCATATACCGGTGCGGAAATAGTCGGATACCTTACACGAAT
CCGCATGTATCCGTCAGTATCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL72956gene:BL72956Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL72956_cuf0-E1BL72956_cuf0-E1-1564476830-507085Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL72956_cuf0transcript:BL72956_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0001244genomeSc0001244:113..635 +
Properties
Property NameValue
Transcript idBL72956_cuf0
Biotypeprotein_coding