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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL72221_cuf0 >transcript:BL72221_cuf0-protein ID=transcript:BL72221_cuf0-protein|Name=transcript:BL72221_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=452bp
MDERDEELLRDHQRDIVSNLRVRDIKSYLIEKKVFNSDMFEEIQTEPTRR
QQVEKFLDLLVLRGPDAFGHFCDSLKTDYNFLFEKLTTERRKTPDQSLKD
ENKKLKSDNMSKGRKLAEVSKVFFFLYQTLENIERELAEGVSYNKVIKLV
KKGMKKLHKHLPPSRPQNKRSRQEKIASTPNLQPDKSKDPSTTNMNGSDI
YKNTTEPQQFCTTSTLSSPSETSDIKPSQYPKRQEKDREGADDLSTISSS
TASHPPSAENSKTDLSTGMSKASVHQSFEGAKVEELPSKPEKESSRTRPA
PILWKTRHQVSETGSQLTTSQTKGPKQNRETKGKQRREAFTNSLLTSGGQ
GMSDRTVNPYTARRHSLQPTQLQPFSQIRVSGFKTSGSVFNNTTSLPVHG
HQPKQVLDWKTRSREDVRKEGQPRLLTKRSLLKSQSLPGLSPGTVPLSRD
RN Run BLAST on NCBI mRNA from alignment at Sc0000215:149729..152568- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL72221_cuf0 ID=transcript:BL72221_cuf0|Name=transcript:BL72221_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2840bp|location=Sequence derived from alignment at Sc0000215:149729..152568- (Branchiostoma lanceolatum)
GTTAGACCCGGCTTTATCACAGGTGTATCGAGTGACACTAAGTCAATAGT
GTGAAACAACTGCACAGCAACGGGAACAGACAACACAGAAGATACACCAC
GTGTAAGAAGGAAGAAAATCTCTTTCCTCAACTCTAGGATTGAACATTTT
GAAGGATGTAGCAATATTTCTCTACCCCTGTTCCTTGTGACACTTATTGT
CAGATTTCAGGACAAACAGGTGAGTCACCTTTCCAACTTTCCTTTTTGTT
TGCTTTTATTTTGTCCAGTCTTAGTATCATAGCAACATAGGGAAAGTTTT
GCTGTAAATTTTCGGCATTTAAGTTACAAATATGGATAAAGGGCATAAAA
TAAAATAGCTATTTTTCAGACTAGGGCTTGTCAGGGGTGCAGATGTAAAT
CTGCAAACTTTGGACCACTGGACTTTTGTACATAACAGCATAAAGCGTCC
AAAGAGCGAAGTTGGGACTGGAGGTCTTCTCCTCAGCTTAGAGCAGCCAG
ATTTTAACAAAAATTGAAGAAATTTAAATTTTAACAGATGAGTGCAAAAA
GTTTAGAACCATTCTGGTTGCACATGAAAGACTACAAAAATGAGACATCC
CATTGTGGTAACTAAGTTTTTAAGTTAAGTTCATATATGGGTCATGGGGG
TGGGGTATGAATGGGGAAGGGGATTTGGTAGCTTTGTGTAGTGTAGCACA
TGTACAAACCTTAAATGACCAATATTTTTCGACTATTTAAAGTTTTCATG
CATTCGAACTCTCGGGAAATATAGATGGCAATTGTCTAAGTTTCGTCAAT
GAAGTGTCTTGGTTGATTTATTACAGAAAACTTTCCAAAATGGATGAAAG
GGACGAGGAACTTTTACGCGATCACCAACGCGACATCGTGAGCAACCTCC
GCGTACGAGACATCAAGTCGTACCTGATTGAAAAGAAGGTCTTCAACTCC
GACATGTTTGAAGAGATACAAACGGAGCCAACAAGGAGGCAACAAGTTGA
AAAGTTTCTTGACCTGCTTGTTCTAAGGGGCCCTGATGCCTTTGGACATT
TCTGTGACTCTCTCAAAACTGACTACAATTTCCTTTTTGAGAAGCTTACA
ACTGAGCGCAGGAAAACACCGGATCAATCACTTAAGGATGAAAATAAAAA
ACTGAAAAGTGATAATATGTCAAAAGGAAGGAAACTTGCTGAGGTTTCCA
AAGTGTTCTTCTTTCTCTACCAAACGTTGGAAAACATTGAAAGAGAGCTG
GCTGAAGGGGTGTCATATAACAAGGTGATAAAGCTGGTCAAGAAAGGAAT
GAAGAAACTGCATAAACACCTGCCTCCATCAAGACCACAAAACAAACGTT
CACGTCAAGAAAAAATAGCTTCTACTCCAAATCTGCAACCTGACAAAAGT
AAAGACCCCTCCACCACAAATATGAATGGCAGTGACATCTACAAAAACAC
AACGGAACCACAACAATTCTGCACTACATCCACACTGTCAAGTCCATCAG
AAACCAGTGATATCAAACCAAGCCAGTACCCCAAAAGACAAGAGAAGGAC
AGAGAGGGCGCTGACGATCTGTCAACTATCTCATCTTCAACAGCCTCCCA
CCCTCCATCTGCAGAGAACTCAAAGACTGACTTGAGCACAGGGATGTCAA
AAGCATCCGTCCATCAAAGCTTTGAAGGAGCAAAAGTTGAGGAACTTCCT
TCCAAGCCTGAAAAAGAAAGTAGCCGTACACGTCCTGCACCCATCCTCTG
GAAGACTAGACACCAGGTATCAGAAACAGGAAGTCAGCTCACAACCAGTC
AAACCAAAGGACCAAAACAGAACAGAGAGACAAAGGGCAAACAACGAAGG
GAAGCTTTCACAAACTCCTTGTTAACTTCTGGGGGTCAAGGAATGTCTGA
CAGAACTGTTAACCCATACACAGCTAGGAGACATTCTCTGCAACCGACAC
AGTTACAACCGTTCAGTCAGATCAGGGTATCTGGTTTTAAAACCAGTGGT
AGTGTGTTCAACAACACCACTTCATTGCCTGTACATGGACACCAGCCAAA
ACAGGTTCTGGACTGGAAGACAAGATCTAGAGAAGATGTTAGAAAAGAAG
GTCAACCAAGACTTCTGACAAAGAGAAGCCTGCTGAAAAGTCAATCTCTT
CCAGGGCTGTCTCCAGGAACAGTCCCTTTGTCCCGGGACAGAAATTAGCT
TGTTGGGACGGACAAAAATTTACCCCATCCGTCCAAAAATCTGAACTTCA
TGACATGAAACTGACGAATAGGCATTTTTGCAGAAAACCTAAAATGACAG
ATTTAACAACAACATGGGCCCCCAAACAATGAGTGGGACGGAAAGTCTTA
AAGTTGGAGACAGCCCTGCTCTCCTAAAAAACTTTAAAGTGAAGTGAAAT
GGATTTGTTGTCTTATCTACATTATGATATTGTTGTTGTAATGTATAGTA
TACAATGATTACTGCTGCTATTGTCATCGTTTTTAAATCTTATATCCAGG
ACCAACTGAAACACATGTCAAAATGGCCTGAGTGTACTTTACTGGTTAAC
AAAATAAAGTGAAGTGAGCAATCATGTACATACAGATGTAGATTCAGTCT
AATTAACTTGATGTGTCTGGTCTGATCGATGATTGGCTGTTACTATACAT
AATATAAGGTACCAGTTGAAACAGAATACTGTTTGTCAAAGTTAAAAAAT
GTTTCTATGTGATGAGAGAAGTGCTACAACTGGAAACATGACTTACATCC
AGTAGATTCTCCCTGAAGTCCTGGCTTGCCTCCAGGATGATGAACTGAGT
GACGTGTGAGCCGCGCCACTTGGGAGTGTTTGGCACGTGG Coding sequence (CDS) from alignment at Sc0000215:149729..152568- >transcript:BL72221_cuf0 ID=transcript:BL72221_cuf0|Name=transcript:BL72221_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1359bp|location=Sequence derived from alignment at Sc0000215:149729..152568- (Branchiostoma lanceolatum)
ATGGATGAAAGGGACGAGGAACTTTTACGCGATCACCAACGCGACATCGT
GAGCAACCTCCGCGTACGAGACATCAAGTCGTACCTGATTGAAAAGAAGG
TCTTCAACTCCGACATGTTTGAAGAGATACAAACGGAGCCAACAAGGAGG
CAACAAGTTGAAAAGTTTCTTGACCTGCTTGTTCTAAGGGGCCCTGATGC
CTTTGGACATTTCTGTGACTCTCTCAAAACTGACTACAATTTCCTTTTTG
AGAAGCTTACAACTGAGCGCAGGAAAACACCGGATCAATCACTTAAGGAT
GAAAATAAAAAACTGAAAAGTGATAATATGTCAAAAGGAAGGAAACTTGC
TGAGGTTTCCAAAGTGTTCTTCTTTCTCTACCAAACGTTGGAAAACATTG
AAAGAGAGCTGGCTGAAGGGGTGTCATATAACAAGGTGATAAAGCTGGTC
AAGAAAGGAATGAAGAAACTGCATAAACACCTGCCTCCATCAAGACCACA
AAACAAACGTTCACGTCAAGAAAAAATAGCTTCTACTCCAAATCTGCAAC
CTGACAAAAGTAAAGACCCCTCCACCACAAATATGAATGGCAGTGACATC
TACAAAAACACAACGGAACCACAACAATTCTGCACTACATCCACACTGTC
AAGTCCATCAGAAACCAGTGATATCAAACCAAGCCAGTACCCCAAAAGAC
AAGAGAAGGACAGAGAGGGCGCTGACGATCTGTCAACTATCTCATCTTCA
ACAGCCTCCCACCCTCCATCTGCAGAGAACTCAAAGACTGACTTGAGCAC
AGGGATGTCAAAAGCATCCGTCCATCAAAGCTTTGAAGGAGCAAAAGTTG
AGGAACTTCCTTCCAAGCCTGAAAAAGAAAGTAGCCGTACACGTCCTGCA
CCCATCCTCTGGAAGACTAGACACCAGGTATCAGAAACAGGAAGTCAGCT
CACAACCAGTCAAACCAAAGGACCAAAACAGAACAGAGAGACAAAGGGCA
AACAACGAAGGGAAGCTTTCACAAACTCCTTGTTAACTTCTGGGGGTCAA
GGAATGTCTGACAGAACTGTTAACCCATACACAGCTAGGAGACATTCTCT
GCAACCGACACAGTTACAACCGTTCAGTCAGATCAGGGTATCTGGTTTTA
AAACCAGTGGTAGTGTGTTCAACAACACCACTTCATTGCCTGTACATGGA
CACCAGCCAAAACAGGTTCTGGACTGGAAGACAAGATCTAGAGAAGATGT
TAGAAAAGAAGGTCAACCAAGACTTCTGACAAAGAGAAGCCTGCTGAAAA
GTCAATCTCTTCCAGGGCTGTCTCCAGGAACAGTCCCTTTGTCCCGGGAC
AGAAATTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000215 | genome | Sc0000215:149729..152568 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL72221_cuf0 |
| Biotype | protein_coding |
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