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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL71501_cuf3 >transcript:BL71501_cuf3-protein ID=transcript:BL71501_cuf3-protein|Name=transcript:BL71501_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=259bp
MAAVLGTQEHGLYDSGDEWEVGVGDLIIDLDADLEKDRQRAEEEKIMVPP SPQKVANNKNPAAGKDIKMKVKRSKGVNGAKTYSISDLNIGKKDGDAQYD FDGAGSSYFTPSSKTGKGSLGEEKSGKSNKGGSHHKSKTSDKSSSSSSGS GKGSSSSGGSNSHQGSSDVGGGSQGSSDVGGGSGCGSGNSGNDGQDGNDK NRKKDDKPSSSKGKSSTSERSEKKKDNDKSGEIGSSAKTKGKKSKADKAE KELLSINER Run BLAST on NCBI mRNA from alignment at Sc0000101:383281..392028- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL71501_cuf3 ID=transcript:BL71501_cuf3|Name=transcript:BL71501_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=8748bp|location=Sequence derived from alignment at Sc0000101:383281..392028- (Branchiostoma lanceolatum) CAGTTGTTCACTGTGGCTACGTGGGCGCAGCCATTCCTGTTTTCACGGGG
ACGATCCTATGTGCCTACATGCTGTGCTGGAGGAGACTGCTCGCTGTGGG
TACTGTACGTGATTACCTCCAGGCTCGCAACTGTTGTGTGACTGTACCCT
AACTGTATCCTGTCTTTTCGTGTAAAATTGTACGTAAGAAGACAGTACAC
TGTCGACTGTTGGTAGTTTTATCGCGTGGTGGGCGAGACGAAGGTCCTAC
CGTCTGTTTAGCGCAGCGCCTGGAACAAAGAACCACGCCGTTCTGTTCAC
AGCGAGGCCCGCGTTGTTGTCTGTTTGCATTTGGATCAAAAAGCAGACCG
GAGACTTTGTGAGTGGAATACAAATCGCGCACGACTCAACTCTGTGCTGC
TGGGACTACCACATTACGTGCAAAACGTTTCACTCAAGATCTACTGCAGT
AAGGTATGTCTTTTCTCTTTAAACTTGTGTAAATCCTAATTCTCTTTACA
AGCACTCCCTGGGCTGGTAGTGAATGCTGTCTGTGACAGCTGTTGGCTGG
TACTGTCAAACAGGGAACGCCTAGAGGCCAAAAATTTGGAGAGGGGAAGC
TCAAATGCCTGGTGTACACAGGGTAGGGAATGTTGTTGTGTGACATGCCA
GCCTTTGTGCATTCTCTGGACTTCCCTGGTTGTCGTCACAGCATTTTTTT
ATAGCAACGATGGCTTCTGTTCATATAAAACCAGACGGTGTTTCTTTCAA
AGCAGGGATTTTACGTGGAGTTTGCCCAAGGACAGATTCATCCCCCACAC
TGCCCTTGTCCCGTCTTTCCTGTGGATGTATCAGTTTTCAGGGCGCAAGA
TGCAGCAGGGATTATGGATCTGTTCGTGTAGAATCCTCGCGCACTGGTTT
ATAGATTCCATTGATGTCATTCACACATTTTTCTTGCTAACACGCCGAAA
CAAAGCCCCACGGGGCGTCCCATCATCTGATAAATTTCAAGGGACTGCAG
AATTGATTACGAGTTTGTCATGGAGAAATCATTCCCGAGTCTTTTTATAT
TCCGGGCGAATCAGTTGCTATTTCCTGTCTTTGTTCGCTGTACCATGACG
AAGTTGGCTCGCCTTTTCTATCGTCTGACCGTGTGTGAATGCTATCGATC
TCTCGCCTTGCCAGCGCCACAAAGCCCATCTCAAATAGAACCGTCAGAGG
ATCAGCAGGTCACCCGATACCGTGACCTCTGGAGCCCATGTGTAACAGAC
GGGGGAATGTGTGTTCTGCATTGGCAGCCGTGTTTGTTCTCGCAAGTGTT
GTGTGAGTCGGGAGTAGTGTGGTCGCCTTTTGTATACATACACATTGTGC
TACACGGGGCGGACGCGGGCTTGAGTTGCCGGCCCCACTGTTGACACGGA
GGTGGTCTGAGGGGACGTAGTGCATATCTTTCTGACAGCGTCCACCTGGA
TATCTACTAAGGACAAACTCACACTCCACCGAGTTTTACAGTCAATGTAC
AGAGGTAAACAAAGGAAAGGGAAGTCTGCTTTCTCCTGCTACTTTAGAGG
AGCAAGGTGGCATAGCTAGGTATAGTTTTACGGGGTGGGGAGACTCGCAA
CTGAACCACACAAACTGCCACGAGTACAGGCACAAAACGTAAATTGTCCG
CCGCGCTTTGTACACAGGCTCCCTGGGGAGATAAAGAGCGCTGTGTTCTC
CCCCGAGAGGCCCACTTCAATTTCCCCCGAACTCATACGATTAGGGAAGC
CGTCACGAGTGTTTCCCACCAACAATTGATAGCGACAATGTCGCCTGTGC
CAACCTCGGGTGCTGCCATGAAACGTATGCCTCATTTGACCCTAGCAACA
AAAATATTGATACTGATAGCATCTGCTGAGGGAAAATTGACTTCTACGAT
TGACAAGTCTTCATTTCCACCTGGCTTACTTCACAGACACTAGTAGTAGT
GTAACTCGTCCACACGAAGAGTCCATTCCAGAGGCAGAGAGACCTATGAA
GAAGGGATTGAATGGTCGGCCTTGTATGGGCCATTGTATCCGCTAAATAT
ATGAGGAGAAAGGCATGGTTGGACCTGGCATTTCATCACGACCGCCTGCC
CATATTCAACTCGACATATATGTAGCACAGAATGTTTTTCTGTTTGTCTA
AAAAACCGTCGCATGTTTTAAATTGCGGGCGTGTTGTGTCACAGAAAGCA
CGGAGTCATTATCAGGTAATCCCATCTTGCAGGCGTTCTTTTCTCGCTTG
TTGACGAATATCTGGGACAACTTAACAATCTTTTCCCCAAACAGATGATT
CCAAGAAGGCGAAACACTGTTGTTTTTATAGCGGATTCTTTAGTACATCT
GCGAGTCCCTGTCCAAAATCTTGATAGTATAGTACAGGGCTTGCAAGGAG
CCAGCTGGCGGAATTTTGGTTGGTCCCAGCGTGATCTCCCCATTGGTGGG
GTCAACTCGAGCGTGTCACGACTGCCTATTCAGTTTCCTCACAAGGCAAC
CGGCACTCGTCAGTCCTATTCTTGATTCCGATGTGTCAAAAGCTAGTCAA
AAGGAGCAAAGAACCACGCCAAGAATACAGTAAATACTACTTGTTGTTGT
CAGAGCAGCGATGTTTTAAACCAGTAAGACTTATGTCCATTGACAGGGGA
AGAGCAATGCATTCTTTTCTTCTTTGTTTTTCGATAAAGGTAAATTTACT
AGGCAATCCAAATGAACACACATTCACTGCGACAGAAAAGAGAAGTGAGG
ATTGTGAACTGGTCTTTAAAAAACATACACAAACAAACAAACTAGAAGTC
TGTCTTTAGATATGGGGTGGGGGTCAAAACATCCTCAACCTCAGCTCAAG
GATTTCTGTCGTAGTCGGCTGCTGCGTGCTAACTGTTATTAGCACAAACG
GTTGAGACGAAAACAATGCATTGTACGCTTTTATGTAGGCCTTTTGATAT
GGCCATAAAGAAGTCAGTGTGATTCGATTATTTGTAACACAAATCAAAAC
TCGATTAGAAAAACACAAACGTACACTGTAAGCTAACAGAAAGCGCAGTG
TGTTTAAGGGATCATTAGATTTCCATGCGGCAAAAATGTGGGGTATTTTA
CTCACACCCGTTTCCGTGCCAACTACGTGTAAAACCTTGAGCCGCTGGGT
ATCGGAGAGAACAATGCCTCTCGCTCCAGGGTGACTGACTCGGTAATTTG
CCCGCGAAATGGGTAGGGCTTATCGCTCCATCGTCGTTAATCGATCCGAG
TCAACAGTCATGACGTCACCCTTTTTCGTTTCGCAGTAAAATGTGTAAAA
AAAAGTCGTCTGCTTTGGGAAATTCCGCCCCCCTCCCCCCGAATGTTACT
AAAAATTGAAAACATTATAGCCAGAGTTTTGTTTTATGTGTGTGTTACGG
AGAAAATAATTTTTCAGACGATGTTGTAATCTGAGGAGAATGATTTCCAT
GTGGGTGACGCGGATAGATGGCTGATAAATTCCCTGGGCTCTCCACTGTG
CTCGCCCAGTGGGAGGTCGACCTTCAACGGTCAGAACAAGTAATTCAATT
TTCCTGTAACGTTACTTGCATAGCGTTATGATAAACGAGTCCGGTCGGAG
AACAGGCCCCAGAAAAATGTCGAATGTTTACATTTTCTAGACCTGGATTG
GCAGGAGGGGCAAAGTTTATGAAATGTATCAATAAAGCGTTCAGTAAACC
GTTCAATAAACCGCTGGATAAATCAGGTTACAGAAGAACTACTTTCACCA
TACATTTTACCGCTCCATACATTCAAGGATCACTACCAGGAAAGCGGAAG
AATACCAAACACGGAACAGCTGGTGTCTTTCATAGATCTAGAGGCGAGCG
ACACGTCTATTTTTCCGATGTAAAATATGCATTGAGCAAGATGTCAACAT
TTGGTAGTAACCGAAGGATGTTTCACTACCATTTTTCACAGGTTGTCTCT
GAAATCTCAAATACATGTAAAACACTGTTGTCAAATTCAGGCCAAAATAT
GCATTTCTATTTTTAATGGAGGCGAAAAGCATAACGTTGTTATTCAAAAC
GCATCGATCAAAACAGTGGGGAAATGGTATTACAGAAATTTTTTTATAGA
AATTAATGACCCAAAGAAGGTACAAAAATGGGCCTGTATTGTCGGGAGTC
TTATACCTGTGAACTACCTTGATTGACTTTTACATTGTGGGCTCGTTCTA
ATGATTATAACACACCGTCAGTAAATGCTGTGGTACCACATCCCAAACAT
TTGAAACGATAGCAATGAACAGCTAGTAATGCATTTTGTTAATGGCCTAC
CATTAGATGAAATTGTCGTTTTATTGAAACAGGTTATCTAATTGATTGCT
TAGTACGGGGCCATATTTCCCATACCAAAATTGATTTTATGCTAATTATT
GATCCCAAGAACAAGAAGTAGCACAAGAGATTTCGAATGATTTTAAGTAA
TACAATATGCAAGAGAAGTCCTTTTATGTTTAGCAGTGTAACTAGCATCA
CAACGTTTATTTTGTAGTGGCGCATTGAATGGTGGATGTAAAATTCAAAC
TTTGGATGCAAAACANATGGTGGATGTAAAATTCAAACCATTGATGCAAA
ACACACAAATGATTTGGGATGGCCTAATCTAGCAGACAGCCTGCTTTACG
TAAATAGGGTGGTGATAATTGGCAGCCAATTGAGTAGGGCTTTAGAAAGC
TGAGAGGACCGGCACGACCGAGTGATCAGTGTGTCACGCACCAGCGGAAG
TGTTCGCGGGTTGGCTGGACATTTGAGGTGACAGCAGGGGGGAACGAGCC
AGGCTGGTGGAAACAAAGAACCACGGCCACTCTCTGTTATCGGACGGCAA
GATATCCCCGTGCTTGCCGAGAAATTAGACTGGAAAAGTGAGGTGTACAA
CGGAGTTGGGATCCCCGATACACAGTGGATGTCTAAACTGAGCAACATTT
GCGTGTGGGTCGCGTGAATTTTGGGTATGCTTGCTATGTTCACCATTTTT
AATCAGTAACCCCGAACGGAGTGGGGGGGGGGGGCTGTTATTAGAAATCA
GGTCACGTAGGATTATGGACCATCCTTGGTAGGATCATGTGTTACAAAGG
CTGCTAGGTTTAGAAGGACTATATTTGGTGGCGTTTATATTAACGTGTCG
TTTGTTAACCTTTAGTAGGGCGGAACACAGTGATGTGATGAAATTGTAGC
CGCAGTAGCATACCACTTGTCTGTGTCTCCATTTATATTGTCCTTCGTGC
TCAAATGGGCGGCCGGGCAAAGTGGTTGATTGATCGGTGTTGTCATGTGG
TGTTTGACTAATTCCCGCCACATGGTAACTCCTGGCAGGCTTAGCATTCA
TGGCCAGACTTTTCCCTGTCATGGGGGAGCTTCTGGGCTGAATACTGAAT
ATCAGGCTCCCTGACACTACGCCAACACACGTTTCTCTAGTTTGTATTAT
TTTGTCTCCCATGATGGGCGTCATGTGGAGAAAATCTTAACGTCTGAAAT
GGCATGTCTTTGTTTGTGTTTGCTCCCGTCCAGGGGTGAGAAGACGGGCG
AGAGGGTGCAGGCTCCTCCTGCTGAGCTCGATGTGGGGGCCGGCGCAGCT
CGGGAGTTCCTGAGGGAAGATGGCAGCAGTACTCGGGACCCAGGAACACG
GCTTGTACGATAGCGGAGACGAGTGGGAAGTCGGGGTCGGCGACCTCATC
ATCGATTTGGACGCAGATTTGGAAAAAGATCGGCAGAGAGCTGAGGAGGA
GAAAATTATGGTCCCACCCTCTCCTCAAAAGGTGGCCAACAACAAAAATC
CAGCTGCAGGGAAGGACATCAAAATGAAGGTGAAACGCAGCAAGGGAGTC
AATGGGGCAAAAACATACAGTATAAGTGATCTAAATATTGGGAAGAAAGA
TGGAGATGCACAGTATGATTTTGATGGGGCCGGTTCAAGTTATTTCACAC
CTTCCAGTAAAACTGGAAAGGGCTCCTTGGGCGAGGAGAAGTCAGGAAAA
TCGAACAAAGGGGGGAGTCATCACAAAAGTAAAACCTCAGACAAAAGCAG
CAGTAGTAGTAGTGGAAGTGGGAAAGGATCATCTTCAAGTGGAGGATCCA
ATTCACACCAGGGGAGTTCAGATGTTGGCGGAGGTTCNCAGGGGAGTTCG
GATGTTGGCGGAGGTTCGGGTTGTGGCAGCGGCAACAGTGGAAACGACGG
CCAGGATGGTAACGATAAGAACAGGAAAAAGGACGACAAGCCCTCGTCTT
CCAAAGGGAAAAGTTCCACGTCTGAAAGAAGTGAGAAGAAAAAGGATAAT
GACAAGTCCGGTGAAATAGGATCTAGTGCCAAGACAAAGGGCAAGAAGAG
CAAGGCAGACAAAGCTGAAAAGGTAACTATTTTTAAAACCTCTCTATCAT
TTGAACGATGTCTTTGTGGGTCATTGTAAATGAAGTTTGCTGCTTGTTTG
TTTGTTTGTTTGTTTATTTTGAAACACCTGGGTAGCCTATTCAGTGCCAA
TACACTGGTTTTCGAGGTTACAAGACTTTTCGCCCCCTGACCCGTTCGTC
CCCGGGTCCTTTCGTCCCCGTCATGGACATTTCGTTCGAGGATGACGCTT
GTCTCACAATTACAAAGTACTCAATTTTCATCATAACATCTCAAAAAACC
TTCAGTGTTGCTTTCTCAAGTCTTTCACGTTGGAAAACCGGCACTAACAT
GACTAAAGTGACGCGCGAGCGGCGAGGGACATCATCATGTCGCCGCCGCC
GCGCCCGCCATCTTGGATGTTTACGCATGTTGCAAATCGCTCGTGGGCGC
CTTTTACGGAGTTTGTGTGAGTAAATGAGCTGACTGAAATGAAATTTTGA
CAAGAAAATTGACTGTATGGGACTGTATTTTGAAAAACGCTGCCCAAGAC
CGACTGGAAGTGTATCGCGATCGAAGTATGACTCGTCTGGAAACGGCAAG
TACTTCGCCGGCTTAAGTTAGAGTTTAGCTGCCGGAAAATACTTTTAAAG
TAATATCTAAATGAATCTGAATAATACGTGATAAAATAACTAGTCATTTA
GGGTTTAAATGTTGTTAAATGGGAGGACGAAATGTCCATGATGAGGACGA
AAGGACCAGGGGACGAACGGGTCAGGGGGCGAAAAGACCTGTTACCGTTT
TCGATAGGGCCCAGTTTCGTTTCACATATACATACATGGAAAATAAAAAA
CAACTTACAGAGAGAAAAGTTTAATGATTGGTAAAAAAGAAACAAAGTGT
GGGGTTTTGTCGCCCGTGCGGACACCTGAAATGTGCCTTGTGAAGTAACT
GTGAAGCCCAACTGTAAATAGATCAGGTCTTGGCAATACATGGAGGAGTA
TCCTGTGTACCCAGAATTTACATCTGGTTAGTGTTTGGCTAAAGTAATTC
TGCAGTCTACAAAAAGGGACATTGTAATTGTGTGGAAGGGGAGGGGGGNA
TTGTAATTGGGTGGAAGGGGGGGGGGGGGCAGTGCTAGAATGGATATACA
TACATACACATGTTCTTTTTGTGCACTTTTTCTCTAACGTTACCTGTAAA
ATTTATTAGGAGAAGATCATTTTAGAGCCTCAAACCATGGGCACAAAAAA
CAGCGCAAAAAGCACCAAAACCAGCATATTGTTTGGATTGGATAAAGGTT
TACTTGATTGTTATACGTCTAGCTGTCTGTGAGTTTAGCACAAGCTCTTT
TCCCCTGATTCTTTGGGGTTGTATTTCTGTAGTGTCTAGAATGCAGCTGG
ATAAAAAGCATGTAGCTTAGCTGCTAGAGCATTGCTCTGAAAACTATGGC
CCTGTGACAGCTGACCTTCCACACCTCCCTTGTTATGCAAACCTTGGAGT
ACAAACACATTAGTCATTACTACTGGGCTGCTGATAAACAATGGCAGCCC
AACGAAAACTGGATTCTTCTGTCTCCTCCCCCAAATGTGCTCTTATCCAC
TTCATTTCCCTATGAAAACAACAAACCCTCACAGTAACCAGGCCCTGACA
GTAACTTCATATTTCAACAGTTGTTATTCAGCATTCTGAAAGGATACATC
TGCTCTAACCTTGTAAAAAAAAAGACCTTGGCTGCCATCCTGAGTGCAAA
TAGCAGTGTTTGAAACCTAAAACAGCTGGGCAGGGGCCACAGCTATCACA
GGATGTAGGCTTTGTTTTTCTCTACAGATATGGGATATGGATATAAAGTT
CTGGTATGTCATCAATGGTATTTTTCTTTTCACCCCACAGGAACTGTTGT
CAATCAATGAGAGATAAGGAACAGTGTCCTGAAATATATGAGCCCATTTT
GTAGATAAGAAAAGGTGTGAAAGGGCCATCCACATGCCGGTATTGTTTGG
TTAAAGTCTGGTAACTCGGATACAATGTGAAGCACACCGTTGTTGGTAGG
TACGAGGAGAATGTAGTTCATAGTTGACCCACCCGTACAGAAATCGCAAT
AGAGTTAACTCTGAGGCACCGAGAGGGTTTTTGAATAATGTTTGTAATGA
TTCCAATCCTAATAAAAGAATATTCAAGTCACAATAGACTCTGGTCACTC
TACTTCTAAATTGAAAAAATTGAACATGAGATTTGAATTTATGCCTATTT
TGGTATCCTGCATCATCTTGTAGTACCAGACTACTGTGTTTTCGAGCCTC
GCACTAAACACTAAACCCCCCTCCCCCATTCATTTGTAATTCCCATATCA
AATCTGGTTGAAACCGGTTGTTTTTCAGTCATAATACAAGTAATCCAG Coding sequence (CDS) from alignment at Sc0000101:383281..392028- >transcript:BL71501_cuf3 ID=transcript:BL71501_cuf3|Name=transcript:BL71501_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1560bp|location=Sequence derived from alignment at Sc0000101:383281..392028- (Branchiostoma lanceolatum) ATGGCAGCAGTACTCGGGACCCAGGAACACGGCTTGTACGATAGCGGAGA CGAGTGGGAAGTCGGGGTCGGCGACCTCATCATCGATTTGGACGCAGATT TGGAAAAAGATCGGCAGAGAGCTGAGGAGGAGAAAATTATGGTCCCACCC TCTCCTCAAAAGGTGGCCAACAACAAAAATCCAGCTGCAGGGAAGGACAT CAAAATGAAGGTGAAACGCAGCAAGGGAGTCAATGGGGCAAAAACATACA GTATAAGTGATCTAAATATTGGGAAGAAAGATGGAGATGCACAGTATGAT TTTGATGGGGCCGGTTCAAGTTATTTCACACCTTCCAGTAAAACTGGAAA GGGCTCCTTGGGCGAGGAGAAGTCAGGAAAATCGAACAAAGGGGGGAGTC ATCACAAAAGTAAAACCTCAGACAAAAGCAGCAGTAGTAGTAGTGGAAGT GGGAAAGGATCATCTTCAAGTGGAGGATCCAATTCACACCAGGGGAGTTC AGATGTTGGCGGAGGTTCNCAGGGGAGTTCGGATGTTGGCGGAGGTTCGG GTTGTGGCAGCGGCAACAGTGGAAACGACGGCCAGGATGGTAACGATAAG AACAGGAAAAAGGACGACAAGCCCTCGTCTTCCAAAGGGAAAAGTTCCAC GTCTGAAAGAAGTGAGAAGAAAAAGGATAATGACAAGTCCGGTGAAATAG GATCTAGTGCCAAGACAAAGGGCAAGAAGAGCAAGGCAGACAAAGCTGAA AAGGAACTGTTGTCAATCAATGAGAGATAAATGGCAGCAGTACTCGGGAC CCAGGAACACGGCTTGTACGATAGCGGAGACGAGTGGGAAGTCGGGGTCG GCGACCTCATCATCGATTTGGACGCAGATTTGGAAAAAGATCGGCAGAGA GCTGAGGAGGAGAAAATTATGGTCCCACCCTCTCCTCAAAAGGTGGCCAA CAACAAAAATCCAGCTGCAGGGAAGGACATCAAAATGAAGGTGAAACGCA GCAAGGGAGTCAATGGGGCAAAAACATACAGTATAAGTGATCTAAATATT GGGAAGAAAGATGGAGATGCACAGTATGATTTTGATGGGGCCGGTTCAAG TTATTTCACACCTTCCAGTAAAACTGGAAAGGGCTCCTTGGGCGAGGAGA AGTCAGGAAAATCGAACAAAGGGGGGAGTCATCACAAAAGTAAAACCTCA GACAAAAGCAGCAGTAGTAGTAGTGGAAGTGGGAAAGGATCATCTTCAAG TGGAGGATCCAATTCACACCAGGGGAGTTCAGATGTTGGCGGAGGTTCNC AGGGGAGTTCGGATGTTGGCGGAGGTTCGGGTTGTGGCAGCGGCAACAGT GGAAACGACGGCCAGGATGGTAACGATAAGAACAGGAAAAAGGACGACAA GCCCTCGTCTTCCAAAGGGAAAAGTTCCACGTCTGAAAGAAGTGAGAAGA AAAAGGATAATGACAAGTCCGGTGAAATAGGATCTAGTGCCAAGACAAAG GGCAAGAAGAGCAAGGCAGACAAAGCTGAAAAGGAACTGTTGTCAATCAA TGAGAGATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| Sc0000101 | genome | Sc0000101:383281..392028 - |
Properties
| Property Name | Value |
| Transcript id | BL71501_cuf3 |
| Biotype | protein_coding |
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