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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL71325_cuf0 >transcript:BL71325_cuf0-protein ID=transcript:BL71325_cuf0-protein|Name=transcript:BL71325_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=786bp
MRIFRRTRRTVFLVLTGGLLSFIYILVGRNVRDIKDENADHLNMIHVAAG
MSRAVRLAVQTPTRASQNFNVDPLKEAGNTEAKVSNKDTDKELANVPEYG
EKLYKVHLEHVSKKSPSSWLTARKHDDSSQVREVKRSDEVHHYSQEQPLC
KYPDLKMESPDFDHLFKNITTLYCGNASIDYLTYLDRNSRTDIAPXADIA
PWDIVKLNSSAILSTQKLLYCTYSAIRRKGDYHIHITTRHKKTYESNNET
MQFPFKDEFAQVTCFLAEDVFNKTKQAWVKSIRQHNNMFVQVRRNDSLVK
DKKVNIEREGRMKTALGHGMNVLMVGVDSTSRMNFMRKLPKTFKYFTETL
EGHVLKGYHVIGDGTTAQFIGMISGYHEDDLPNTKTGTANATTCDVFPLV
WSKFRRMGYTTMYAEDEAWAGTFQYRTKGFQKQPTDYYMRPFWVAQDHLR
KSKESFCFGATPKHHYTLNYTRDFVEAYKDIPKFAVVFHTELSHDHLNMV
QVADEDILTLVRSWKDTGYLNNTILVLFADHGSRYGNLRNTQQGRLEERL
PFFGIAVPPWMKERHPEIIRNLQKNEERLTTAFDFHKMLQHVMDYPGDPS
GFQGNGISLFQEIPLNRTCEDASIADHWCTCMTTLTVNNNMKLVREAAGF
AVSYMNNLTAMHRSLCAELFLKNITHAEVLRPNNKLLLFHDSDLIFRNAL
FGKILRLSFMDLRITLETGPNGGAYEVSVRKWLPDKKTEITADISRINAY
GDHPRCIQDQFPHLRKYCFCREFLKTVSPGPEWIVK Run BLAST on NCBI mRNA from alignment at Sc0000078:862502..866117- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL71325_cuf0 ID=transcript:BL71325_cuf0|Name=transcript:BL71325_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3616bp|location=Sequence derived from alignment at Sc0000078:862502..866117- (Branchiostoma lanceolatum)
AAGAGTTCCTGAAAGTTTAAGACAGTATGAGGATCTTTAGGCGCACCCGA
CGCACAGTTTTCCTGGTCCTGACTGGCGGACTTCTTTCTTTCATCTACAT
CCTTGTGGGGAGGAATGTTCGCGACATCAAGGATGAAAATGCCGATCATT
TGAACATGATTCATGTTGCCGCCGGGATGAGCAGAGCAGTGAGGCTGGCT
GTTCAAACACCAACACGGGCTTCACAAAACTTCAACGTTGATCCCCTTAA
AGAAGCAGGCAATACAGAGGCTAAGGTCAGCAACAAAGACACTGATAAAG
AGCTTGCCAATGTGCCTGAATATGGTGAAAAGCTTTACAAGGTCCATCTT
GAACACGTCAGCAAAAAGTCTCCCTCTAGTTGGTTGACAGCAAGGAAGCA
TGATGATAGTTCACAAGTAAGAGAAGTCAAACGCAGTGATGAAGTTCACC
ATTACAGTCAAGAGCAGCCATTGTGCAAGTATCCGGACTTGAAGATGGAG
AGTCCAGACTTCGACCACCTTTTTAAGAATATAACAACCCTGTACTGCGG
AAATGCCTCTATCGACTACCTGACATATCTTGACAGGAACTCGCGGACAG
ATATAGCCCCTNGGGCAGATATAGCTCCTTGGGATATCGTCAAACTAAAC
TCCAGCGCCATTCTGTCAACTCAGAAATTACTCTACTGCACATACAGTGC
GATTAGGAGAAAGGGTGATTACCATATTCATATTACCACTCGGCACAAAA
AAACATATGAGTCCAACAATGAGACAATGCAATTTCCATTCAAAGACGAG
TTCGCACAGGTCACCTGTTTTTTAGCAGAGGATGTCTTTAACAAAACAAA
ACAGGCATGGGTTAAATCTATCAGGCAACACAACAACATGTTTGTGCAGG
TGAGGAGAAACGATAGCCTGGTTAAGGACAAAAAGGTGAACATAGAGAGG
GAAGGCCGAATGAAGACAGCCCTCGGACATGGTATGAATGTACTAATGGT
GGGAGTGGATTCAACATCGCGTATGAACTTCATGCGAAAACTGCCCAAAA
CATTCAAGTACTTCACAGAAACTCTGGAGGGTCACGTTCTGAAAGGATAT
CACGTGATTGGCGACGGCACCACAGCGCAATTCATCGGCATGATTTCAGG
GTATCATGAGGACGATTTACCCAACACGAAAACGGGAACTGCAAATGCGA
CAACCTGCGATGTATTCCCGTTAGTCTGGAGTAAGTTCAGGAGGATGGGC
TACACGACAATGTACGCTGAGGACGAAGCGTGGGCAGGAACTTTCCAATA
TCGAACGAAAGGCTTTCAAAAGCAGCCAACTGATTACTACATGAGACCTT
TCTGGGTGGCCCAAGACCATCTCCGCAAGTCTAAAGAATCGTTTTGCTTC
GGAGCAACTCCTAAGCATCACTATACCCTGAACTACACTCGCGATTTTGT
GGAAGCGTATAAAGACATACCCAAGTTTGCAGTTGTGTTTCACACTGAAC
TCAGCCACGACCATCTGAACATGGTGCAAGTTGCGGATGAAGACATTCTG
ACACTCGTCAGATCATGGAAGGACACAGGTTATCTCAACAACACCATTTT
AGTACTTTTTGCTGACCACGGATCCCGCTATGGTAACCTTAGAAACACGC
AACAAGGTCGACTGGAGGAAAGGCTGCCGTTCTTTGGAATCGCCGTTCCT
CCTTGGATGAAGGAGAGGCACCCGGAAATTATCCGAAACCTCCAGAAAAA
CGAAGAACGTCTTACGACAGCGTTCGACTTCCACAAGATGCTGCAGCACG
TGATGGACTATCCAGGAGACCCGTCTGGTTTCCAGGGAAACGGCATCAGC
CTGTTCCAGGAGATCCCGCTCAACAGAACATGCGAGGATGCCTCCATTGC
TGATCACTGGTGCACCTGTATGACGACTTTAACAGTGAACAATAACATGA
AACTAGTTCGAGAAGCAGCAGGTTTTGCCGTCTCCTACATGAATAATCTA
ACAGCAATGCACCGAAGCCTTTGTGCCGAGTTATTCCTGAAGAACATAAC
TCATGCAGAAGTTCTCCGACCCAACAACAAACTACTCCTTTTCCATGACA
GCGACCTGATATTTCGAAATGCCTTGTTTGGTAAAATCCTACGTCTTTCT
TTCATGGACCTTCGAATCACACTGGAAACTGGACCCAATGGTGGCGCATA
TGAAGTGTCGGTGAGAAAATGGCTGCCTGATAAGAAGACTGAGATAACGG
CAGACATCAGTCGCATCAACGCCTACGGAGACCATCCTCGCTGCATCCAG
GACCAGTTTCCCCATCTGAGGAAATACTGCTTCTGCAGAGAGTTCCTTAA
AACTGTGTCTCCCGGTCCAGAGTGGATTGTAAAATAGTGAACATAACACT
CCTTAATCTACTACCATGTATAGTATATAACAGTGTCTCCTTAGTCTACT
ACCTTAGTCTATAATGTATTGAGCATATAATTGAAGAGTACATTTTGTAG
AGGGCATACCACACTTCCAACACATTTCTGTCCCCAAAAATGCATGATTT
TTCAAAACTGATCATTTAGGGTATAACTGTTTGGATGAATAACAATTCTG
ATATTAAACACTCACCTGTAAAATTGACCTTCCCATACAGATCCTGTATC
TGTGGTGCAATGCCAAGCTTGAACAGGAAAAGGCTGGAAACGAAGCAGTA
CCAAAAGTTAACATCGTCTGACTTACAAGATTTTTTTTCTTTAACACAGC
CAGTAAATCTTACCTGCTGACGCTTCGGTGTCGGTCAGACATCATCCTCA
GAGCTAATCTGACCACTACAAGTAGCCGAAGTAGGTGGTGCTTTTGGGGT
GAGAACGCAATCCCGAGTGCCACCTACTTTGGCTACTTATAGCGGTCAGA
AGCTCAGAGGAAGGTGTCTGACCGACACCGAAACGTCAGCATTTGAGATT
TACTAGCCTTAGTGTCATCCTGTTTGCTCTGGAACTGAACCAGGATGCCA
CTCAGGCTAAGATTTACTGGTTGTATTAAAAAAAAAGAATCTCCAACATC
CTAATGTTCTACCAACCTGATGAAATTATTTTCGGAAATCTGTGTAATAT
ACACAATCATGTACATTTAAACCAATACATTGATATCATGATGATTCAGG
GAGTGAAAAAAGGTAGTTTATACGTACAACTGATACAATCTTATTGCGTA
CATACATGTACTTTAAGCATAATTTATTTAACTTATGAAATGAATTTATT
GTTATGGAAAGTGTGAGGGTAGATGGTTACCCTTTTACATAATTACCATC
TAAAGTTCAGCACATCTGCTGACAATTTTTTCCCCTTCTGTTCTTTGATT
AAAGGGGTTTTTAACATCCCGAAAATAAGTGATGATAACTGGCAAACATT
CTAACGGTAAGTTCTATTTTCAGCAATTAAGTCAACCTTTAGGCTTCATC
AACAGTCTGGAAAGGCTTTGTTTTCAATCTGACTGCCATATTAGGGCTTA
ACCCGAGAGTGGGAACATTGTGAGCACAGGAAAAACAATAACACAGCCAC
AGAGGGACTATGTATGACTCATGTTCTAAAATTTGAACCCACAATGAACT
TGTGATTTGATTACCA Coding sequence (CDS) from alignment at Sc0000078:862502..866117- >transcript:BL71325_cuf0 ID=transcript:BL71325_cuf0|Name=transcript:BL71325_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2361bp|location=Sequence derived from alignment at Sc0000078:862502..866117- (Branchiostoma lanceolatum)
ATGAGGATCTTTAGGCGCACCCGACGCACAGTTTTCCTGGTCCTGACTGG
CGGACTTCTTTCTTTCATCTACATCCTTGTGGGGAGGAATGTTCGCGACA
TCAAGGATGAAAATGCCGATCATTTGAACATGATTCATGTTGCCGCCGGG
ATGAGCAGAGCAGTGAGGCTGGCTGTTCAAACACCAACACGGGCTTCACA
AAACTTCAACGTTGATCCCCTTAAAGAAGCAGGCAATACAGAGGCTAAGG
TCAGCAACAAAGACACTGATAAAGAGCTTGCCAATGTGCCTGAATATGGT
GAAAAGCTTTACAAGGTCCATCTTGAACACGTCAGCAAAAAGTCTCCCTC
TAGTTGGTTGACAGCAAGGAAGCATGATGATAGTTCACAAGTAAGAGAAG
TCAAACGCAGTGATGAAGTTCACCATTACAGTCAAGAGCAGCCATTGTGC
AAGTATCCGGACTTGAAGATGGAGAGTCCAGACTTCGACCACCTTTTTAA
GAATATAACAACCCTGTACTGCGGAAATGCCTCTATCGACTACCTGACAT
ATCTTGACAGGAACTCGCGGACAGATATAGCCCCTNGGGCAGATATAGCT
CCTTGGGATATCGTCAAACTAAACTCCAGCGCCATTCTGTCAACTCAGAA
ATTACTCTACTGCACATACAGTGCGATTAGGAGAAAGGGTGATTACCATA
TTCATATTACCACTCGGCACAAAAAAACATATGAGTCCAACAATGAGACA
ATGCAATTTCCATTCAAAGACGAGTTCGCACAGGTCACCTGTTTTTTAGC
AGAGGATGTCTTTAACAAAACAAAACAGGCATGGGTTAAATCTATCAGGC
AACACAACAACATGTTTGTGCAGGTGAGGAGAAACGATAGCCTGGTTAAG
GACAAAAAGGTGAACATAGAGAGGGAAGGCCGAATGAAGACAGCCCTCGG
ACATGGTATGAATGTACTAATGGTGGGAGTGGATTCAACATCGCGTATGA
ACTTCATGCGAAAACTGCCCAAAACATTCAAGTACTTCACAGAAACTCTG
GAGGGTCACGTTCTGAAAGGATATCACGTGATTGGCGACGGCACCACAGC
GCAATTCATCGGCATGATTTCAGGGTATCATGAGGACGATTTACCCAACA
CGAAAACGGGAACTGCAAATGCGACAACCTGCGATGTATTCCCGTTAGTC
TGGAGTAAGTTCAGGAGGATGGGCTACACGACAATGTACGCTGAGGACGA
AGCGTGGGCAGGAACTTTCCAATATCGAACGAAAGGCTTTCAAAAGCAGC
CAACTGATTACTACATGAGACCTTTCTGGGTGGCCCAAGACCATCTCCGC
AAGTCTAAAGAATCGTTTTGCTTCGGAGCAACTCCTAAGCATCACTATAC
CCTGAACTACACTCGCGATTTTGTGGAAGCGTATAAAGACATACCCAAGT
TTGCAGTTGTGTTTCACACTGAACTCAGCCACGACCATCTGAACATGGTG
CAAGTTGCGGATGAAGACATTCTGACACTCGTCAGATCATGGAAGGACAC
AGGTTATCTCAACAACACCATTTTAGTACTTTTTGCTGACCACGGATCCC
GCTATGGTAACCTTAGAAACACGCAACAAGGTCGACTGGAGGAAAGGCTG
CCGTTCTTTGGAATCGCCGTTCCTCCTTGGATGAAGGAGAGGCACCCGGA
AATTATCCGAAACCTCCAGAAAAACGAAGAACGTCTTACGACAGCGTTCG
ACTTCCACAAGATGCTGCAGCACGTGATGGACTATCCAGGAGACCCGTCT
GGTTTCCAGGGAAACGGCATCAGCCTGTTCCAGGAGATCCCGCTCAACAG
AACATGCGAGGATGCCTCCATTGCTGATCACTGGTGCACCTGTATGACGA
CTTTAACAGTGAACAATAACATGAAACTAGTTCGAGAAGCAGCAGGTTTT
GCCGTCTCCTACATGAATAATCTAACAGCAATGCACCGAAGCCTTTGTGC
CGAGTTATTCCTGAAGAACATAACTCATGCAGAAGTTCTCCGACCCAACA
ACAAACTACTCCTTTTCCATGACAGCGACCTGATATTTCGAAATGCCTTG
TTTGGTAAAATCCTACGTCTTTCTTTCATGGACCTTCGAATCACACTGGA
AACTGGACCCAATGGTGGCGCATATGAAGTGTCGGTGAGAAAATGGCTGC
CTGATAAGAAGACTGAGATAACGGCAGACATCAGTCGCATCAACGCCTAC
GGAGACCATCCTCGCTGCATCCAGGACCAGTTTCCCCATCTGAGGAAATA
CTGCTTCTGCAGAGAGTTCCTTAAAACTGTGTCTCCCGGTCCAGAGTGGA
TTGTAAAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000078 | genome | Sc0000078:862502..866117 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL71325_cuf0 |
| Biotype | protein_coding |
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