transcript:BL71249_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL71249_cuf0
Unique Nametranscript:BL71249_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL71249_cuf0

>transcript:BL71249_cuf0-protein ID=transcript:BL71249_cuf0-protein|Name=transcript:BL71249_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=105bp
FHGTQDAVVDAICQQNFDWRLSGSRVGQLYGQGTYFSASSQYSHSYAQQA
SNGCRYMFVVRVLVGAYTKGDPGVRRPPPVNPSEPYGRMYDSCVNDTANP
NICHL
Run BLAST on NCBI

mRNA from alignment at Sc0000349:79457..79787-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL71249_cuf0 ID=transcript:BL71249_cuf0|Name=transcript:BL71249_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=331bp|location=Sequence derived from alignment at Sc0000349:79457..79787- (Branchiostoma lanceolatum)
CTTCCACGGGACCCAAGATGCTGTCGTGGACGCCATCTGTCAGCAAAACT
TCGACTGGCGGCTCAGCGGCTCGAGAGTCGGGCAGCTCTACGGGCAGGGA
ACGTATTTCTCCGCCAGCTCTCAGTACTCACACAGCTACGCACAGCAGGC
TTCAAACGGGTGCCGTTACATGTTCGTGGTTAGGGTTCTTGTCGGGGCTT
ATACGAAAGGGGACCCGGGCGTCCGTCGCCCTCCCCCCGTCAACCCCAGC
GAGCCGTACGGTAGGATGTACGACTCCTGTGTTAACGACACGGCCAATCC
GAACATTTGTCATCTTTGACAACGCCCAGTG

Coding sequence (CDS) from alignment at Sc0000349:79457..79787-

>transcript:BL71249_cuf0 ID=transcript:BL71249_cuf0|Name=transcript:BL71249_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=318bp|location=Sequence derived from alignment at Sc0000349:79457..79787- (Branchiostoma lanceolatum)
TTCCACGGGACCCAAGATGCTGTCGTGGACGCCATCTGTCAGCAAAACTT
CGACTGGCGGCTCAGCGGCTCGAGAGTCGGGCAGCTCTACGGGCAGGGAA
CGTATTTCTCCGCCAGCTCTCAGTACTCACACAGCTACGCACAGCAGGCT
TCAAACGGGTGCCGTTACATGTTCGTGGTTAGGGTTCTTGTCGGGGCTTA
TACGAAAGGGGACCCGGGCGTCCGTCGCCCTCCCCCCGTCAACCCCAGCG
AGCCGTACGGTAGGATGTACGACTCCTGTGTTAACGACACGGCCAATCCG
AACATTTGTCATCTTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL71249gene:BL71249Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL71249_cuf0-E1BL71249_cuf0-E1-1564476830-444671Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL71249_cuf0transcript:BL71249_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000349genomeSc0000349:79457..79787 -
Properties
Property NameValue
Transcript idBL71249_cuf0
Biotypeprotein_coding