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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL71161_cuf1 >transcript:BL71161_cuf1-protein ID=transcript:BL71161_cuf1-protein|Name=transcript:BL71161_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=118bp
HKMVLRVAVIGAGPAGLCAAHLLSAEPDRYLPTVYEQTAAVGGTWVYIDR
TGTDQHGLPVHSSIHKNLRTNFPKEAMVFPDFPYDSDLPSYLPHKEVRRY
LENYAEHYRLHKYIQVSL Run BLAST on NCBI mRNA from alignment at Sc0000041:2162560..2166496- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL71161_cuf1 ID=transcript:BL71161_cuf1|Name=transcript:BL71161_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3937bp|location=Sequence derived from alignment at Sc0000041:2162560..2166496- (Branchiostoma lanceolatum)
ACATAAAATGGTGCTTCGCGTGGCAGTGATCGGTGCGGGTCCGGCTGGCC
TGTGCGCTGCGCACCTCCTGTCGGCTGAACCTGACCGGTACCTGCCGACC
GTGTACGAGCAGACCGCGGCGGTGGGCGGGACCTGGGTGTACATCGACCG
GACTGGGACGGACCAACACGGGCTTCCTGTACACTCCAGCATACACAAAA
ACCTAAGGTACATCATCTATTCACAGCTTTTCAGTGAGGTGTAGCTGGTG
GTTATCAATCTTATCCTGAAACTTCGGTAGCATTTTAATCTTGGTGCAAT
TTTTAAAGTATCACGCCTGCATACATTGTCGCCGGAAGCATGTCGAGCTA
TTTCCGGTGTCCATGGATAAGGTATGGGGAGGGAGTTAGGTGAACAGACG
TTCATCAGATTATGTACAAAAAATAACAAGGAACAAAAACTGGCTTCAAA
GTACACTTAACAGTATTTCAATGTCCAAAACCTTCCATTCACTGGACAGC
TAAACATTTCTAGTTGCCGCTTTTGGAAAAAGCCGGGATTCGACTCCTGC
ATTTCAACGCACTAGACCTGTTTGAACGTAAACAAACAGTGATCTCACCC
CCTGCAGCTGGGAAACACTGGTCTAGTAGGGGAAAACCCCCTCCCAAATG
ATGTAATTCTATACCACAACAAATGTCAAAGGTCACAATTTCTTTCTGGA
TTTCAAAAGTGTCTGGTCTCCCTGCCTGAAAACTGGCCAAAAGTGACCAA
AGATTTCACCAGGAAAAAATTCTCAAAAATGATAACAAGAAAATTAAGGT
CATGCAAACTGGGCTTTGTGCGCATGTCCATTAACCGGTCCCTCCCCATA
TGTAATTCATTCCATGGCCGTGAAGGTGCTCATGCCATTTTTAGTAACAA
GAGTTCGGAGACCTAATACCTCCATGAAATGTTTTGAGCCTTTGTAGATT
TATTGTTTTATTTTGTCTCCTTGATGATACAAATGTGGCTGTAATTGGCA
TAATCTGTTTCAAATGATGTTCTTCTCTACCAAAATTATGTGTATATCGT
ATATGTGAAAGTCCTATCTTTAGAGGACAATGTTTACATTGATTATAGAT
TATGCAAATTACTTGCACATCAATATAATCTATACATATAAATTTGAAAG
TATGAAATTCGAACCATTTACCAAAAAGGAATTATGACACTTTCACCTTG
ATAATGCAAATTAGGCCAATATTTGCATAATTGGTATCTTTAGATGTTCC
ATCTTCCATAAATTGCATGTGTCACACTTATTTAAGTCCTATTATGGAGA
ACACTGCAAATACATATTTTCCTCATTAACTATATAATAGAATAAATCTG
ATTTGCATAATTTGCATTCCATTGTGTACATCTCTAAGCTACCTGCATAC
TGAATATCATGGGAATTCGTCGTTCCTTTGTTTAGATATTATTTACATTT
TGACCAAAACGCCCCTGCAGTTCCAGAGCACGCTGCTAGGGGGCCCAAAC
CTACATCACTTCTTCTTCAGAAGCTATCAACCGCCAAAACATCACCAAAG
ACGATAGCGCGTCCAGGACAAAAGATACAAATCAGGAAGTTCTGCTGCAC
TACCAAGGTCACATACCCGGGGTCCAAAGTCGACCTTGACCTTCGTCTTC
TCAAGACCTACCCATATACCAACTATTATCGTAATCCAGAGGTTCTATAG
TTACAACCGGAAAAACAAACACACATAGCAGCCCCTAACAATCCCAACTT
CTAGCCGCAGACAGCCGAAATTGACAGATTCACAGCTTCAGAGTCATGTA
CCACTTTTTGCATGGCTGAGGCATCAATAATTTGGAGACCTCATATCTCC
ATGAACTATTCTAATTGTGCAAATGACATCCACATTTACATGATTTATGC
TTGGTCATGCACACCTATAACTAACTTACACATGTCGCAATCATTTACCA
CTTACATGCACTTTTTCATTAACAATGCAAATTAGAAATTTATCCGCATA
ATTGGCATCTGTCAATGTTCCACCTGCCATATACTACGTATGTTACCTGT
ATTTCATTCCTTTGATGGAATGCACTGCAAACATAGCTTTCCTTATCAAC
TATGCAAATTAAGTCCCAAGTTGCATAATTTGCATGTCCTTATACACATC
TCTGTCTAAAATATATGCATGATAGATATAATGGAAATCCGTCGTTCCTT
TGTTCAGTTATTCTCCTGCAGTTTAAGAGTTGCTAGGGGGGGGGGGGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGCAAAC
CTAAACCACTTCTTCCACAAGCTATCTGTCAGCAAAAAATTTAGACCACA
ACACGTCCAGGTCAAAAGATACGAAAAACGGAAGTTCTCCTGAAGTACCA
AGGTTACACACCAGGGGGCTAAAATCAACCTTGACCTTCGTCTTCCACGC
CGGATATACCAAATATCATCATAATCCATTAAGAGGTTTTTGAGTTATGC
TGACTGCAAATATCCGGAAACAGAAATAGACAGACACAAAGACAGACAAA
CAAACAAACACACAGAAATACAAGCCAAAAAACTGTCCATGAGTTTACGC
TAAAAGACCCCAGCTCCTTGCCCTGGTCAAGAGCAATGTTAAGTGAGATA
AATGAAATATCATAGCTATGAGATATTCAAGTCGAGTCTACGCACAACTC
TTTATCTAGACAAAAGGACGCCAAAATGCTAGCTTGTTCACTAAGGAGTT
TTGATTGGTTCAGAATGATTCTATTTTTTCCTACAAAAGGACAAATTTTC
CCAAGGAGGCAATGGTCTTCCCAGATTTTCCTTACGACAGCGACTTACCA
TCTTACCTCCCCCACAAGGAGGTGCGTCGGTACCTAGAGAACTATGCAGA
GCACTATAGACTGCACAAGTATATTCAGGTATCCTTGTGATTTGCTTACT
GGGTTCAATATTACATGTCTAACCATTAGGTTATCATGAAACCGAGAGAT
GATATTACTGTAGATAAGATATGGTGAAGGGAAGAAAATATTACACGGGT
AGTTCTTCATCAACTGAGTAAACATATAGCCTGGTTGCCATCCACTAGCT
CAATCCTTTCGCTTGCTACTATTAGCGGTAACTACGGAGGATGGCACCCA
GGCTAGTAAACATATATACTAGAAGCTTCTTCAATCTTCTGTTTCCCAGT
TCCTGACCAGGGTTGATGTGGTGAAACCTGTTCACGTCCATGGCGACGTG
AAATGGCAGATTACGTCATTCAAGGTCACGGCTCCAGACAGCCCGAGCAC
GGAGCAGTTTGATGCCGTCATGGTCTGTAATGGCGGG Coding sequence (CDS) from alignment at Sc0000041:2162560..2166496- >transcript:BL71161_cuf1 ID=transcript:BL71161_cuf1|Name=transcript:BL71161_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=714bp|location=Sequence derived from alignment at Sc0000041:2162560..2166496- (Branchiostoma lanceolatum)
CATAAAATGGTGCTTCGCGTGGCAGTGATCGGTGCGGGTCCGGCTGGCCT
GTGCGCTGCGCACCTCCTGTCGGCTGAACCTGACCGGTACCTGCCGACCG
TGTACGAGCAGACCGCGGCGGTGGGCGGGACCTGGGTGTACATCGACCGG
ACTGGGACGGACCAACACGGGCTTCCTGTACACTCCAGCATACACAAAAA
CCTAAGGACAAATTTTCCCAAGGAGGCAATGGTCTTCCCAGATTTTCCTT
ACGACAGCGACTTACCATCTTACCTCCCCCACAAGGAGGTGCGTCGGTAC
CTAGAGAACTATGCAGAGCACTATAGACTGCACAAGTATATTCAGGTATC
CTTGTGACATAAAATGGTGCTTCGCGTGGCAGTGATCGGTGCGGGTCCGG
CTGGCCTGTGCGCTGCGCACCTCCTGTCGGCTGAACCTGACCGGTACCTG
CCGACCGTGTACGAGCAGACCGCGGCGGTGGGCGGGACCTGGGTGTACAT
CGACCGGACTGGGACGGACCAACACGGGCTTCCTGTACACTCCAGCATAC
ACAAAAACCTAAGGACAAATTTTCCCAAGGAGGCAATGGTCTTCCCAGAT
TTTCCTTACGACAGCGACTTACCATCTTACCTCCCCCACAAGGAGGTGCG
TCGGTACCTAGAGAACTATGCAGAGCACTATAGACTGCACAAGTATATTC
AGGTATCCTTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000041 | genome | Sc0000041:2162560..2166496 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL71161_cuf1 |
| Biotype | protein_coding |
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