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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL70713_cuf3 >transcript:BL70713_cuf3-protein ID=transcript:BL70713_cuf3-protein|Name=transcript:BL70713_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=223bp
YTQSFCVNYDVLLPEVTALTSTFSRSLAELGLSNVLTDLEDLRDVGLIPF
AGELGPITGGGDGACTHWTRWYNRDHPSGNGDYENLLYLRRENPGQICSA
PSAIEARVRGTLTPASQTGEQFLNFDTTVGFECRNIDQTDRYCLDYEVRF
CCPLVHGSRRRRQFVESTHWNRVGDVTSLVYDANSGAEEQLVSFAAPNLE
DIGENEHLLGEYRKSVEIFCIDI Run BLAST on NCBI mRNA from alignment at Sc0000264:133111..138093+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL70713_cuf3 ID=transcript:BL70713_cuf3|Name=transcript:BL70713_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=4983bp|location=Sequence derived from alignment at Sc0000264:133111..138093+ (Branchiostoma lanceolatum)
TACACCCAAAGCTTTTGTGTCAACTATGACGTCCTACTCCCTGAAGTAAC
GGCCCTGACAAGCACTTTCAGTAGGTCCCTTGCGGAACTCGGTCTGAGTA
ATGTACTCACGGACCTAGAAGACCTACGTGACGTGGGTATGTAGATATTT
CAGAACGTATGTTGCGCTGTATTTTCTTTAAAGTTTCTACAGTTTTTTCT
CAGTTTACTTTTAACTTGAAAAAAAGTGTCTAACTACCTTCAGATTTCCA
CTTAAAACTATCCAATTTCGTCTTAAACGCTTCAATGTTGTAATGTAACC
TTTTTATGGCTATTGGTAGGTTTGATTCCTTTCGCCGGAGAATTAGGACC
GATCACTGGAGGCGGTGACGGAGGTAAATATGAAACAAGCAAGTTTTAAC
CATTTTACACTTGTACAAAATTTATTTGGACATGTGCGTACCTGCAACAG
GATCAGAACACTTTCATTTGCGGGAGTAAACTAGAATATTCCTTTACCAT
TCAGGATAGATGGCGTCATAAGTACAACGAAAATGTCGCATCTTTCGAGG
ACAAAGATAACAGCTTACGTTTCTTTTAAGCTTTCACCCGTCCATATCTT
GACTAGTAAATACTATATTCGAGCCTTTCCTATTTTCTTTCTTTGGGGCA
AGGACAATAAGCAAAAACGTACACACCGCAACATTCCGATTACAATGTAC
GATATTGTTGTGATAGATGCGACGACCGTTTTAGAAGGCAATGATCGTTT
TTGCGGACAGCCAGTCGGAAAAACGATAATGCACGGCATCACACTGACTA
ATCAGGAATTGCCAAGGGATCATAATCCACCTTTGAACCAATTTTAGCAT
GTACCCACTGGACGCGCTGGTATAACCGTGACCACCCGAGTGGCAACGGT
GACTATGAGAATTTGCTCTACCTCCGGCGGGAGAATCCTGGACAGATCTG
CTCCGCACCTTCGGCCATAGAAGCCCGTGTCCGAGGGACTCTAACCCCGG
CCTCCCAAACAGGAGAGCAGTTCCTTAACTTCGACACGACAGTCGGCTTC
GAATGCAGGAACATTGACCAGACGGACCGCTACTGCCTCGACTACGAAGT
GCGCTTCTGCTGCCCCCTGGTTCATGGTATGTGTAAGGTTTCAGAGTCGT
TGTCTTACATGTGTCTTCATTTTATTGTCTTTGACCATATAACCTATCGC
ATTTATTACCTCCATTTAGTATTTAGGGCCTTTGCGGATTTATTGTTTCA
TCTGGAAATACCTGACGCAGCATAGAAATAGAAATTTAGGCCGAACGAAG
CAGCTGGTATAATTTGGCTTGTCCTTGGGGAGTTTCCCACGCTAAAATAC
AGGGATAAAGTACTCGAACAACCAATCAGCATCCAGGAGGGCCATGCGCG
GGCAGTCAAGGGGTACATTCTGGTAGCGGGCCGCGTTTATCTCATCTGTC
AGGATTCTGCCAACTTTCTCGTAGTTTTAGTATCAACGAGCTTGCCCCTT
ATACTTGGATGCCACTACAACCGCCTGTTGCAGGACTAAAACACTAGGCA
ACCCTCAATGCTCCACAAACCTAACTACACCACCACAGCAGGTCACCGCA
CATTTGCCTTCAGAGGCACAACATGTTTAACACAATACACTACCAGCATA
ACTCAAGAAATTCGATATTCACACGCTCATCAAAACAATCGAAAACTATT
TATAGCGAATAACTTGCGTATACACGTAATTTCGTGAATACCCCAAACTA
TTATACCTCCTGGGCCATACTGTGCGTATGGCTGCGTACATAAAACTTAC
ACCGAGATGCGTGTGATATGCGTATTGTGCGCACGGCGGCGCACGGAAAA
AATGTCAACGCGCAACTCACACGCAACGGCCACACGTACAAGTTTGACAG
GGGCTTAAGAGAGGACACTGCTCGGGGCTAGCGCTGAACCGTGATGCGTA
CTATAAAATACGCTGTAACTTATGGCTGTGTTTTAAAGAGTGCGTTAGAG
AGGTCATCGCGAATACCATGAACATTGTTCATGGAATACCATGAACATTG
TTCTAAGATTCGGCTGCCCTAAACATTCGGCGGCCCTAAACAATCGGCGG
CCCTAACTCCCGTAACTAAACCCCTGTCACACGTGTGCGTATATACAAGT
CCGCAAGAGTTGAGTATTTACATTGGGGGGGGGGGGGTAGGTCAAGTTTG
CAGCAAAAGAAATCATTTCTTTGGTTCGATTACTGGCAGCACAACGGTAG
ATCAAAGTCAAAACAACTTCTTCGCCTCAAATTTACTTAAACCAAAACAA
AAAAAAATGTTACAGTGAAATTCCTGCGCACTTGAATATACACACAAGTG
TGACGTTGCCCTTATACTTGCGCACATTAAAGTGCGTAGGTGAGTTGCGC
ATCAACATTTCTTTGGTTTAAGTAAAGTTTGAGGGGAAGAAGTTGTTTTT
CCTTTTAACCACTGTTGTGCAGCCTTGTTATCGAACTAAAGAAATGACTT
CTTCGCCTGCAAACAGGGGCTTAACGGACTTCGCGCGATACATGCACGGG
GAATCCCGAATCTCGGTTATGACCGTGCACGGCACAGAGGGCATGTTTCT
GTATCCCAGATATATCCGGGTCTGGTTACTCTCCAAGCAGAGGTTGTTAA
ATAAGATTGTGACCATTTTATCATATATACCGTTTTTTTCCGCTCGGGAG
AGACCGTAGAAAATGCGTCTGGAAGCCCAAGGGTTTTTAAGAAATGTTTG
GTTCAAAATGTTATCGATCGTAGCACGATGATTGTACTAGTCAATGTCAT
CCCACACCTAGCTGGCAACATATATTTCTTAGTGTCTTTCTATTAACCAA
TTGAAGGTTAAAAACTATTTTGTTAATGTTCTTAGAAATAGCTTCTTCCC
TTGATTTTCCTTGATAGGCCCGGCAGTCTGCTGAAATGATATTCTGTTTT
GATTTTTGGGTGGCAGATAGCTTGTGATGTAATAAAAAAGTGATGTAGGT
TTGGGCCCCCTAGCAGCTTGTTTCTATAGCATTAAATAGCATTATATATG
TATTGGCCTAGTTAGACAGATACAATGTCAGGGCATGATAGAAGTACATT
GAATATTTCTTTACTTGTTCCATTTAATGTTATTTTCTTCTTACATGTAA
TAAATGACATAACTACATTAAGCTTTCTACTTGTCTTACGACGATTCCAT
GTTGGACTACCACACTTTTGTAGGAAGCAGGCGAAGACGACAATTTGTTG
AGAGTACTCACTGGAATCGGGTAGGTGATGTGACAAGCTTAGTCTACGAC
GCGAACAGTGGCGCAGAGGAGCAACTGGTGTCTTTTGCCGCTCCCAACTT
GGAAGATATTGGTGAGAACGAGCATCTTCTTGGTGAGTACCGTAAGTCTG
TAGAAATATTTTGTATTGATATATGATACATGAATTGTTTGAACAGCGTG
CAGGAATAGTACACGTTCTTAGTCAAAACTGAAATCTTAGTAATACATAG
ACAGCCTCATCATGAAACTATGAATAGTGCTGAATACTCATTAGATCTCG
CATAAGTGGTAACTGTAAAAGATAAGCAAACATTTACGTGCTTGAATGAT
AACCACTAATCCAGCCAACATAGTACAATGTTTGGTGACCAATAACTCAT
CTTATTTAGACGTCTCCTAATGGGGGTAAGAATGATACATTTAGTGACTG
ATACATGGCCTTGAGTTACTGTAGTAAAATCGACAATTTAAAGTCTTGAA
ATTTGATCGAACTCATTCCGTAGGTCCTCTTCAATACCTCACACAAGATG
TCGAAGGGTTTCCTACAAACTACCCTGCTACCACCACCGAGGCAATGCCG
TCCCTGGTGCAGGATTTCCATAACATGCTCGCCAGCTTTAATTGTGGAAA
CAATCCCGGTCCTAACTGTGAGCTAAAGCGTGGGCTGGACGATGTGGTAC
ATTTAGACAATCACTGGTACATTGTCTACAGGCCAGCCATTGAGTACGAC
CCTGGAAGCACAAAGAGAGGCATACGTTTCAGGATTCTTATTGTGGCCTG
GCGTGGCTTAAGAATCTTTATTCGATGCTTCATATATTGATGAAATCAAT
TTACCAATTCATTTGTTAATGACGATATCCCTTGACCTGTACACTTAATC
TAAATGTTTTATTGTTAGAAAAAGTATTATAATCTTTATATGTTGGATTA
TCATTGTGGCCTGGCGAGGCTCTAGAACCTTCAATCGATGCCGCATATAT
TGAGTTAAGGAATTTATCAGTTTAAGTACCGCTAATGATATCCCTTGATT
TGTCACCGGTTACCTTGATTTAAAAGTTTTAGAGTACATCCAAGCACACT
TATTTGAATAGGTAGAGTAGGGGTACCCTCGTGTGCTTGGCTATAAAAGG
GAGCCGTATCGAAGCTACATCAGCTATATAAAAAAAAACACATGACGTTT
CGTCTCAAGCATTACGCTTCGGGTTCGATTAAAGAATAATAATATATTTT
GTGCAGGGGGCTTGGAATATTTTTGTTTAAATACCTTTTCTTCAGGTAGA
TGGAGATGTCCGTTCATATACTCACATACAAGGTGCGTTAATTAAAGTGG
TAATGAGAAACGATAATGTACTATGAACGCTCATGGATCCATATCTATGC
GTTTTTTTTATTATAAGCAAACGCTTCAACTGTTAATTTACACCAAGTGG
ACGTGTTTCACGCTTTATAAGTCAACGGACGGGCTAGTAAGCTTTGAGTT
ATAATATCAATTTATGTTTATTGTCGATAACCTGCCATATACGGCTTCCT
TATATTCGATGCATAAAATTGGTGTATTTATTGGCATTGACTACAGTTGA
TAATGGTAATTTCTGTTACTAATATGTGTTTTTTCAGATGGATGTTAACT
ATATAGAATTGTATATACTACAGGAGGAATTTTAAAAATCATAAATGCTT
TGTAATTCATGTGATGGGAGTTTCAATATGCTG Coding sequence (CDS) from alignment at Sc0000264:133111..138093+ >transcript:BL70713_cuf3 ID=transcript:BL70713_cuf3|Name=transcript:BL70713_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2688bp|location=Sequence derived from alignment at Sc0000264:133111..138093+ (Branchiostoma lanceolatum)
TACACCCAAAGCTTTTGTGTCAACTATGACGTCCTACTCCCTGAAGTAAC
GGCCCTGACAAGCACTTTCAGTAGGTCCCTTGCGGAACTCGGTCTGAGTA
ATGTACTCACGGACCTAGAAGACCTACGTGACGTGGGTTTGATTCCTTTC
GCCGGAGAATTAGGACCGATCACTGGAGGCGGTGACGGAGCATGTACCCA
CTGGACGCGCTGGTATAACCGTGACCACCCGAGTGGCAACGGTGACTATG
AGAATTTGCTCTACCTCCGGCGGGAGAATCCTGGACAGATCTGCTCCGCA
CCTTCGGCCATAGAAGCCCGTGTCCGAGGGACTCTAACCCCGGCCTCCCA
AACAGGAGAGCAGTTCCTTAACTTCGACACGACAGTCGGCTTCGAATGCA
GGAACATTGACCAGACGGACCGCTACTGCCTCGACTACGAAGTGCGCTTC
TGCTGCCCCCTGGTTCATGGAAGCAGGCGAAGACGACAATTTGTTGAGAG
TACTCACTGGAATCGGGTAGGTGATGTGACAAGCTTAGTCTACGACGCGA
ACAGTGGCGCAGAGGAGCAACTGGTGTCTTTTGCCGCTCCCAACTTGGAA
GATATTGGTGAGAACGAGCATCTTCTTGGTGAGTACCGTAAGTCTGTAGA
AATATTTTGTATTGATATATGATACACCCAAAGCTTTTGTGTCAACTATG
ACGTCCTACTCCCTGAAGTAACGGCCCTGACAAGCACTTTCAGTAGGTCC
CTTGCGGAACTCGGTCTGAGTAATGTACTCACGGACCTAGAAGACCTACG
TGACGTGGGTTTGATTCCTTTCGCCGGAGAATTAGGACCGATCACTGGAG
GCGGTGACGGAGCATGTACCCACTGGACGCGCTGGTATAACCGTGACCAC
CCGAGTGGCAACGGTGACTATGAGAATTTGCTCTACCTCCGGCGGGAGAA
TCCTGGACAGATCTGCTCCGCACCTTCGGCCATAGAAGCCCGTGTCCGAG
GGACTCTAACCCCGGCCTCCCAAACAGGAGAGCAGTTCCTTAACTTCGAC
ACGACAGTCGGCTTCGAATGCAGGAACATTGACCAGACGGACCGCTACTG
CCTCGACTACGAAGTGCGCTTCTGCTGCCCCCTGGTTCATGGAAGCAGGC
GAAGACGACAATTTGTTGAGAGTACTCACTGGAATCGGGTAGGTGATGTG
ACAAGCTTAGTCTACGACGCGAACAGTGGCGCAGAGGAGCAACTGGTGTC
TTTTGCCGCTCCCAACTTGGAAGATATTGGTGAGAACGAGCATCTTCTTG
GTGAGTACCGTAAGTCTGTAGAAATATTTTGTATTGATATATGATACACC
CAAAGCTTTTGTGTCAACTATGACGTCCTACTCCCTGAAGTAACGGCCCT
GACAAGCACTTTCAGTAGGTCCCTTGCGGAACTCGGTCTGAGTAATGTAC
TCACGGACCTAGAAGACCTACGTGACGTGGGTTTGATTCCTTTCGCCGGA
GAATTAGGACCGATCACTGGAGGCGGTGACGGAGCATGTACCCACTGGAC
GCGCTGGTATAACCGTGACCACCCGAGTGGCAACGGTGACTATGAGAATT
TGCTCTACCTCCGGCGGGAGAATCCTGGACAGATCTGCTCCGCACCTTCG
GCCATAGAAGCCCGTGTCCGAGGGACTCTAACCCCGGCCTCCCAAACAGG
AGAGCAGTTCCTTAACTTCGACACGACAGTCGGCTTCGAATGCAGGAACA
TTGACCAGACGGACCGCTACTGCCTCGACTACGAAGTGCGCTTCTGCTGC
CCCCTGGTTCATGGAAGCAGGCGAAGACGACAATTTGTTGAGAGTACTCA
CTGGAATCGGGTAGGTGATGTGACAAGCTTAGTCTACGACGCGAACAGTG
GCGCAGAGGAGCAACTGGTGTCTTTTGCCGCTCCCAACTTGGAAGATATT
GGTGAGAACGAGCATCTTCTTGGTGAGTACCGTAAGTCTGTAGAAATATT
TTGTATTGATATATGATACACCCAAAGCTTTTGTGTCAACTATGACGTCC
TACTCCCTGAAGTAACGGCCCTGACAAGCACTTTCAGTAGGTCCCTTGCG
GAACTCGGTCTGAGTAATGTACTCACGGACCTAGAAGACCTACGTGACGT
GGGTTTGATTCCTTTCGCCGGAGAATTAGGACCGATCACTGGAGGCGGTG
ACGGAGCATGTACCCACTGGACGCGCTGGTATAACCGTGACCACCCGAGT
GGCAACGGTGACTATGAGAATTTGCTCTACCTCCGGCGGGAGAATCCTGG
ACAGATCTGCTCCGCACCTTCGGCCATAGAAGCCCGTGTCCGAGGGACTC
TAACCCCGGCCTCCCAAACAGGAGAGCAGTTCCTTAACTTCGACACGACA
GTCGGCTTCGAATGCAGGAACATTGACCAGACGGACCGCTACTGCCTCGA
CTACGAAGTGCGCTTCTGCTGCCCCCTGGTTCATGGAAGCAGGCGAAGAC
GACAATTTGTTGAGAGTACTCACTGGAATCGGGTAGGTGATGTGACAAGC
TTAGTCTACGACGCGAACAGTGGCGCAGAGGAGCAACTGGTGTCTTTTGC
CGCTCCCAACTTGGAAGATATTGGTGAGAACGAGCATCTTCTTGGTGAGT
ACCGTAAGTCTGTAGAAATATTTTGTATTGATATATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000264 | genome | Sc0000264:133111..138093 + |
Properties
| Property Name | Value |
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| Transcript id | BL70713_cuf3 |
| Biotype | protein_coding |
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