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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL70670_cuf4 >transcript:BL70670_cuf4-protein ID=transcript:BL70670_cuf4-protein|Name=transcript:BL70670_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=251bp
MASSEEIILYYESGSTPCMAIMLALEEKGASYTKKEVDTEKDEDIAMLEE
VADRDEPPALLHGDQVLFDEVVPACLYLEKIFDNNRMIPEGAVQRAHVMK
CMIQAQKIGVGDTSIDAYWEDDEEDYEDDNMDEEKAEALEEKEDKRELAE
ELAEWEFYLTKGSFIAGSEFTMADCVFIPVLIYLVTNGLDLTKKYPLLHK
YYTTVMERPSVVEVRKHHQIDAKDIFKDMPTGVLGAVGDKVKGFFGKLVN
K Run BLAST on NCBI mRNA from alignment at Sc0000123:177747..184925+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL70670_cuf4 ID=transcript:BL70670_cuf4|Name=transcript:BL70670_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=7179bp|location=Sequence derived from alignment at Sc0000123:177747..184925+ (Branchiostoma lanceolatum)
GACTTGCTCTACCAGTCACATGACCATGTTGTCTAAAGAAGCTACTCCAG
ATACATAACAACTAGCCTGCTTCTCAGACTAGTCTGCAGCTCTCCTCGCC
ACAGTCAACAGCTACAGGAACTCACCATGGCGTCTTCGGAAGAAATCATT
CTGTACTATGAGTCAGGCAGCACGCCCTGTATGGCAATAATGCTAGCCCT
GGAAGAAAAGGGAGCCAGCTACACCAAGAAAGAGGTGGACACAGAAAAAG
ACGAAGACATTGCGATGCTTGAGGAAGTGGCCGACAGAGATGAGGTAGGT
TGTCGTCCATACATATGATCCATACACATCGAGAAATGCACACATATCAA
CATTCAATTAGTACGCTTGTCTCTCAGACTGAATCATTTCTGTATTACGT
CTTTCGGTGCATTTTTTCGGTCCATGAATCTTATAACACAGGTCAATCCT
TTCTCCTTATTAACCGTGCCTTTTCCATACTTTGCAGCCCCCGGCGCTCC
TGCACGGGGATCAGGTGCTGTTCGACGAGGTCGTACCCGCCTGTCTGTAC
TTGGAGGTACGTACAATTACTGGAATCGTACCGTTAATTTANNNNNNNNN
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NNNNNNNNNNNNNNNGGGGTTGAGGTAAACATTTCTTATCCACTTCGTAA
TGTTTCCGTATATTATGCTCCTTCACGCTCATATAAATTTCTGGGGACAG
AGGCTCTTTGCTGCCTCCGCAATGGTAAATGTTTTAGACAAATGTGATCC
ACAATCCAATGAATAAATGTGACGTCTTTTCTACAGAAAATATTTGACAA
CAACCGCATGATTCCCGAAGGCGCCGTGCAGCGAGCCCACGTCATGAAGT
GCATGATCCAGGCACAGAAGATCGGAGTGGGAGACACCAGTATCGACGCT
TACTGGGAGGACGACGAGGAAGATTATGAGGATGATAACATGGTAACAGC
ACCCTTAAACCATAGGATGAAACGTATTCTTTACTGCGTGAATACCAAAC
ATCAGTGAAAATAAAAGAAATATAATGTAAAGTAAACATTAAGGTTGATT
AGTCTCCCTTTGTGTGTCTGTCAAAGACAATATCGTTCAACTAGGATTGT
GCAAGCCTTGAACGAAGGAGGCATGTTCATGTTCAAGATACTTGTTTTTG
CAACATTTGAGACTACGAGACTTCATTCGCAACTTACATCATATGTACAT
GTTAACACAGTACATGTTTGTCTCACCGAATGCATGAATACTAGTTGTCG
TACAAGACAATTGTAACTATGGGTTTGATTGCTCCTTTGCCTGTTTATTT
TTACACGCCAATGTTTATATATACGGCTAAACTGGACTCTTTATTCACCA
GGATGAGGAGAAGGCTGAAGCACTTGAAGAAAAAGAAGATAAACGAGAAC
TGGCCGAAGAGCTCGCAGAGTGGGAGTTCTATTTGACAAAGGTAAGAAGA
AATCGATCCTGATCACCACAAAACATTGAAGCTTGAGTAAAAACAATCGC
ATATTAAATAAAGTTCCACGAGCCCAAACATTTGCAAATGATGTTAACCT
TTGCGAATGATGTATCATACAGGCTCCTCGTTGACATATATCCTATCAGT
TGACAATTTTGTCTACCCAAATAACACATGTTGGTGAAAATATAGAAATC
CTGTCTTAGCAAAAAAGGCTATTCTAGTATTTTATTGTCAGTTATGCAAA
TGAGGCCATGATTTGCATAGTTTGTATGTGATGCTGTATGTTCGCCATTA
AATCTAGCTTCCAATTGCCACATGTGTCATATTGCAGTTATTTACCTCCA
TTGAATTATAGTATTTTCTCATTAATCATGCAATCTATGTCCACATGTGC
ATAATTGACATATCATATTGGTTGACAACCCTGTCATGAGCGGCTGTGAC
CCACGGCTGACCCAGAAATGCCAGCTCTGGTGGTGTCCTCGTATATAGGT
CCAGCCCTGGTGGGGTATATAGGTTGAAATCACTTTATATCATTAATCCT
GTCGATTTCGCCCTGATTTGCATAAAATGCATTTCATTCTGTCAAAAAGA
ATAAGAATCCACCAACGTTGCAACCCCTTCTCGAGTTATCCTCCTCAAAA
GTACGGCATCTTGATTCTTTATGACGAGTTCTGGTGGGTCTATTTCTGCC
ACAATATAGGGCACCTCGATGACGTGCATTAAATCAATAGATCTCCATCA
TCAAAACCTTCATTTGACATACCCGAAATTGAGAGCTTCTATATATCACT
TCTAACATGGTCTTGAACTTGTTTGTTTATAGGGTTCTTTCATCGCAGGG
TCAGAGTTCACCATGGCAGATTGTGTGTTCATCCCAGTGCTGATCTACCT
CGTGACAAATGGACTCGACCTGACCAAGAAGTACCCACTGTTGCACAAGT
ACTACACTACGGTGAGCTACGTTTTCTTTTTAGCTATTTCTAATCTTCAT
TCCCACACTTGTTCATGGATTATCCCTGTCGCTTCTAGCATGGTCAGCTA
GTATGCACTGTTGCGTCATTTTTGTCGGTAAACCTTTTCTATGAACACAA
ATATGTTCTTTTAGATAAATATTTCTGATTATCATTTTGTCTATTCATTA
CCATTGTCATTCTTTTTACAAATAGGTCATGGAGCGGCCCAGTGTCGTGG
AGGTCAGAAAACATCACCAGATAGATGCAAAAGACATCTTCAAGGACATG
CCGACGGGCGTCTTGGGCGCAGTGGGCGACAAAGTCAAGGGATTTTTCGG
GAAACTAGTTAATAAGTAGCGGTTAACGATACATTATTCAACGTGACTAT
CTCAACAAGACTCATATAGACTTGAATTTACTTAGATAATTTCTGATGTG
ATAGACATCTTCAGGGGATCTAGTGGATAAAGTCTACCTTCTTGCTTATA
TCGGGTGGGGAAATCGTAATGTGTTTTCTTTTTTTTTTGACGGTACGATA
ATCCGGTCATAAACTGGGGAGGCAGAAGTGAACATAGCAGTCTCCCCTCC
AAGTATCTGCTAGGATATTGAATATGCATGGTATCATAACTTGGGTGTTT
TTACTGATAACATCTAATGCTAATGCGAT Coding sequence (CDS) from alignment at Sc0000123:177747..184925+ >transcript:BL70670_cuf4 ID=transcript:BL70670_cuf4|Name=transcript:BL70670_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=4536bp|location=Sequence derived from alignment at Sc0000123:177747..184925+ (Branchiostoma lanceolatum)
ATGGCGTCTTCGGAAGAAATCATTCTGTACTATGAGTCAGGCAGCACGCC
CTGTATGGCAATAATGCTAGCCCTGGAAGAAAAGGGAGCCAGCTACACCA
AGAAAGAGGTGGACACAGAAAAAGACGAAGACATTGCGATGCTTGAGGAA
GTGGCCGACAGAGATGAGCCCCCGGCGCTCCTGCACGGGGATCAGGTGCT
GTTCGACGAGGTCGTACCCGCCTGTCTGTACTTGGAGAAAATATTTGACA
ACAACCGCATGATTCCCGAAGGCGCCGTGCAGCGAGCCCACGTCATGAAG
TGCATGATCCAGGCACAGAAGATCGGAGTGGGAGACACCAGTATCGACGC
TTACTGGGAGGACGACGAGGAAGATTATGAGGATGATAACATGGATGAGG
AGAAGGCTGAAGCACTTGAAGAAAAAGAAGATAAACGAGAACTGGCCGAA
GAGCTCGCAGAGTGGGAGTTCTATTTGACAAAGGGTTCTTTCATCGCAGG
GTCAGAGTTCACCATGGCAGATTGTGTGTTCATCCCAGTGCTGATCTACC
TCGTGACAAATGGACTCGACCTGACCAAGAAGTACCCACTGTTGCACAAG
TACTACACTACGGTCATGGAGCGGCCCAGTGTCGTGGAGGTCAGAAAACA
TCACCAGATAGATGCAAAAGACATCTTCAAGGACATGCCGACGGGCGTCT
TGGGCGCAGTGGGCGACAAAGTCAAGGGATTTTTCGGGAAACTAGTTAAT
AAGTAGATGGCGTCTTCGGAAGAAATCATTCTGTACTATGAGTCAGGCAG
CACGCCCTGTATGGCAATAATGCTAGCCCTGGAAGAAAAGGGAGCCAGCT
ACACCAAGAAAGAGGTGGACACAGAAAAAGACGAAGACATTGCGATGCTT
GAGGAAGTGGCCGACAGAGATGAGCCCCCGGCGCTCCTGCACGGGGATCA
GGTGCTGTTCGACGAGGTCGTACCCGCCTGTCTGTACTTGGAGAAAATAT
TTGACAACAACCGCATGATTCCCGAAGGCGCCGTGCAGCGAGCCCACGTC
ATGAAGTGCATGATCCAGGCACAGAAGATCGGAGTGGGAGACACCAGTAT
CGACGCTTACTGGGAGGACGACGAGGAAGATTATGAGGATGATAACATGG
ATGAGGAGAAGGCTGAAGCACTTGAAGAAAAAGAAGATAAACGAGAACTG
GCCGAAGAGCTCGCAGAGTGGGAGTTCTATTTGACAAAGGGTTCTTTCAT
CGCAGGGTCAGAGTTCACCATGGCAGATTGTGTGTTCATCCCAGTGCTGA
TCTACCTCGTGACAAATGGACTCGACCTGACCAAGAAGTACCCACTGTTG
CACAAGTACTACACTACGGTCATGGAGCGGCCCAGTGTCGTGGAGGTCAG
AAAACATCACCAGATAGATGCAAAAGACATCTTCAAGGACATGCCGACGG
GCGTCTTGGGCGCAGTGGGCGACAAAGTCAAGGGATTTTTCGGGAAACTA
GTTAATAAGTAGATGGCGTCTTCGGAAGAAATCATTCTGTACTATGAGTC
AGGCAGCACGCCCTGTATGGCAATAATGCTAGCCCTGGAAGAAAAGGGAG
CCAGCTACACCAAGAAAGAGGTGGACACAGAAAAAGACGAAGACATTGCG
ATGCTTGAGGAAGTGGCCGACAGAGATGAGCCCCCGGCGCTCCTGCACGG
GGATCAGGTGCTGTTCGACGAGGTCGTACCCGCCTGTCTGTACTTGGAGA
AAATATTTGACAACAACCGCATGATTCCCGAAGGCGCCGTGCAGCGAGCC
CACGTCATGAAGTGCATGATCCAGGCACAGAAGATCGGAGTGGGAGACAC
CAGTATCGACGCTTACTGGGAGGACGACGAGGAAGATTATGAGGATGATA
ACATGGATGAGGAGAAGGCTGAAGCACTTGAAGAAAAAGAAGATAAACGA
GAACTGGCCGAAGAGCTCGCAGAGTGGGAGTTCTATTTGACAAAGGGTTC
TTTCATCGCAGGGTCAGAGTTCACCATGGCAGATTGTGTGTTCATCCCAG
TGCTGATCTACCTCGTGACAAATGGACTCGACCTGACCAAGAAGTACCCA
CTGTTGCACAAGTACTACACTACGGTCATGGAGCGGCCCAGTGTCGTGGA
GGTCAGAAAACATCACCAGATAGATGCAAAAGACATCTTCAAGGACATGC
CGACGGGCGTCTTGGGCGCAGTGGGCGACAAAGTCAAGGGATTTTTCGGG
AAACTAGTTAATAAGTAGATGGCGTCTTCGGAAGAAATCATTCTGTACTA
TGAGTCAGGCAGCACGCCCTGTATGGCAATAATGCTAGCCCTGGAAGAAA
AGGGAGCCAGCTACACCAAGAAAGAGGTGGACACAGAAAAAGACGAAGAC
ATTGCGATGCTTGAGGAAGTGGCCGACAGAGATGAGCCCCCGGCGCTCCT
GCACGGGGATCAGGTGCTGTTCGACGAGGTCGTACCCGCCTGTCTGTACT
TGGAGAAAATATTTGACAACAACCGCATGATTCCCGAAGGCGCCGTGCAG
CGAGCCCACGTCATGAAGTGCATGATCCAGGCACAGAAGATCGGAGTGGG
AGACACCAGTATCGACGCTTACTGGGAGGACGACGAGGAAGATTATGAGG
ATGATAACATGGATGAGGAGAAGGCTGAAGCACTTGAAGAAAAAGAAGAT
AAACGAGAACTGGCCGAAGAGCTCGCAGAGTGGGAGTTCTATTTGACAAA
GGGTTCTTTCATCGCAGGGTCAGAGTTCACCATGGCAGATTGTGTGTTCA
TCCCAGTGCTGATCTACCTCGTGACAAATGGACTCGACCTGACCAAGAAG
TACCCACTGTTGCACAAGTACTACACTACGGTCATGGAGCGGCCCAGTGT
CGTGGAGGTCAGAAAACATCACCAGATAGATGCAAAAGACATCTTCAAGG
ACATGCCGACGGGCGTCTTGGGCGCAGTGGGCGACAAAGTCAAGGGATTT
TTCGGGAAACTAGTTAATAAGTAGATGGCGTCTTCGGAAGAAATCATTCT
GTACTATGAGTCAGGCAGCACGCCCTGTATGGCAATAATGCTAGCCCTGG
AAGAAAAGGGAGCCAGCTACACCAAGAAAGAGGTGGACACAGAAAAAGAC
GAAGACATTGCGATGCTTGAGGAAGTGGCCGACAGAGATGAGCCCCCGGC
GCTCCTGCACGGGGATCAGGTGCTGTTCGACGAGGTCGTACCCGCCTGTC
TGTACTTGGAGAAAATATTTGACAACAACCGCATGATTCCCGAAGGCGCC
GTGCAGCGAGCCCACGTCATGAAGTGCATGATCCAGGCACAGAAGATCGG
AGTGGGAGACACCAGTATCGACGCTTACTGGGAGGACGACGAGGAAGATT
ATGAGGATGATAACATGGATGAGGAGAAGGCTGAAGCACTTGAAGAAAAA
GAAGATAAACGAGAACTGGCCGAAGAGCTCGCAGAGTGGGAGTTCTATTT
GACAAAGGGTTCTTTCATCGCAGGGTCAGAGTTCACCATGGCAGATTGTG
TGTTCATCCCAGTGCTGATCTACCTCGTGACAAATGGACTCGACCTGACC
AAGAAGTACCCACTGTTGCACAAGTACTACACTACGGTCATGGAGCGGCC
CAGTGTCGTGGAGGTCAGAAAACATCACCAGATAGATGCAAAAGACATCT
TCAAGGACATGCCGACGGGCGTCTTGGGCGCAGTGGGCGACAAAGTCAAG
GGATTTTTCGGGAAACTAGTTAATAAGTAGATGGCGTCTTCGGAAGAAAT
CATTCTGTACTATGAGTCAGGCAGCACGCCCTGTATGGCAATAATGCTAG
CCCTGGAAGAAAAGGGAGCCAGCTACACCAAGAAAGAGGTGGACACAGAA
AAAGACGAAGACATTGCGATGCTTGAGGAAGTGGCCGACAGAGATGAGCC
CCCGGCGCTCCTGCACGGGGATCAGGTGCTGTTCGACGAGGTCGTACCCG
CCTGTCTGTACTTGGAGAAAATATTTGACAACAACCGCATGATTCCCGAA
GGCGCCGTGCAGCGAGCCCACGTCATGAAGTGCATGATCCAGGCACAGAA
GATCGGAGTGGGAGACACCAGTATCGACGCTTACTGGGAGGACGACGAGG
AAGATTATGAGGATGATAACATGGATGAGGAGAAGGCTGAAGCACTTGAA
GAAAAAGAAGATAAACGAGAACTGGCCGAAGAGCTCGCAGAGTGGGAGTT
CTATTTGACAAAGGGTTCTTTCATCGCAGGGTCAGAGTTCACCATGGCAG
ATTGTGTGTTCATCCCAGTGCTGATCTACCTCGTGACAAATGGACTCGAC
CTGACCAAGAAGTACCCACTGTTGCACAAGTACTACACTACGGTCATGGA
GCGGCCCAGTGTCGTGGAGGTCAGAAAACATCACCAGATAGATGCAAAAG
ACATCTTCAAGGACATGCCGACGGGCGTCTTGGGCGCAGTGGGCGACAAA
GTCAAGGGATTTTTCGGGAAACTAGTTAATAAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000123 | genome | Sc0000123:177747..184925 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL70670_cuf4 |
| Biotype | protein_coding |
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