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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL70649_cuf0 >transcript:BL70649_cuf0-protein ID=transcript:BL70649_cuf0-protein|Name=transcript:BL70649_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=934bp
MICDFNGDPMESSEAKDKEAKWVSAVRSLFHTTAGRMKDFVRQLLAECRE
TLGPPPCKYAIIGLGSMAREEMTPYSDFEFAILLEEIAQEQHKEYFRNLT
SLLHLKVINLGETILPSMAITSLNNFYSNEEEDNWLYDWKTPRGFAFDGA
MPSASKSPLGREAVDGKPAVELIMTPTEMASLQERQAFADEDNVNHLSDI
LSTVTWVEGDKSLVEDYQERLDLDPSYLVKKALITLFDDASKYQEDIVSA
SKPGFQYDVKKEIYRFPTLTVSSLGICFESKRNTPWEVIDALRDKELISE
TRAHNLSVAISIATLLRLQTYLAYCRQKEGVTTLPVLHQREKKSGEQDLP
HKLPSSALLMRFYQTSIPLQIYVYVALVMSIPPTLVKVPLKLVRQFLSEH
QSSEESGTHEGSVTSSMRACGSSSLLENLVSLVKTVENPYKPSAFSQSQS
STGPANGGGQNLEPHQNLPTETAADPDVENILLQLTIFQHRLPGDVSELL
GADHDFYCNSDLLRGLIHYRLMHYQEAEPLLRAAYHKKPNRLTHGYLWTL
LSLGKYDEALKAAQEFTELHQLSLDGCFALAHLYIRIGQFEKAREVCTKA
LEMLDINFDAELWEILIYLQLADISTNLGEYSKAKELAGLIEQMIFETNE
EVVKKQPLIMLNIRFNLGILFSSLGQMVKAHSCHKKTINMCNMIFGMNVA
HHITASCFRELARIMYRHSDCNTALWYADLSLKMTQNIYSDTCHPDVIKS
LNVLFEILWEQDRNEQATLIAEESLELALKTRGLNKTNLAQVYTNLGKVS
SDTGAHSKAIWCHEEALRIDREHYHNKPSGNIAVSLEGLGIAYWKAGDYA
MAFQHVQEALHMQEDLFGKDTPRPNTAESLSILGCIKKDMGDHTEAVWYL
EKSLSMMKEVFGGRVTDRMVDTIQTLQELRWMSE Run BLAST on NCBI mRNA from alignment at Sc0000255:266673..271970- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL70649_cuf0 ID=transcript:BL70649_cuf0|Name=transcript:BL70649_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5298bp|location=Sequence derived from alignment at Sc0000255:266673..271970- (Branchiostoma lanceolatum)
TCTTTTTTTAGAGTAATGCACTTTTTGTGGAGTCAATAAAGATACATAAC
ATACTACATTTTGGCTAAGCTTGATTTGCATTTCCTCAAATGCTAATGTA
CACAATTTTCACACTTTGTCAGCAGGAAAGATCTGAAAGACAATCCCTTG
TCGACAATGTCACTTTACTACCAATTAATCTATCGCATTTTCCTTCTTTC
CATTCAAATCTCCTGTCTACATTGAAATTCTGTATAATAATAATAATATC
AGGTGTATTTGCAGCCAGTGCCACAGGCAGGTACCCAATGTGTAGGGTAA
TGAGGCTGTTTAACGTGTTCGAGGCACCTCCTCGAGCACGGGACCCCCGT
TTTACGTCCCTCCCGGAAGACGATTTCGTGGAAAGCTTCGTGAGGCTACA
GCAATCCGGACGTCCTTGGTTGGTCTCCCATCCAAGCACTGTCCGGACCG
CGCGTTGCTTAACTTCCGAGATCGAGGGATCGGGTGTATCCAACGCGCCA
CGCGGTAAGAAACGTTCCATTGTATTTATGGGCCTTCGTATGTACTGTAC
CGTACATGTACCTATACGGCTACAGGTCTTTCCACTTACCCTTACTTACA
TGCATGTATGCCATGCCTTGCTAACTATTAATCTCTTTGAATGTAGAAAC
TCTGGTATGAGATCTCATGGGTTCAAAGGTTATGCTTACACTGAAACACG
GAAGTTGTGTGGTTTCACTCAATCCCCTTAAGGGTGTGGTTTCACTTCCA
CTTAAGTGGTTTCACTTCCCCTTAAGGGTGTGGTTTCACTTCCCTTTAAG
CGTGGCAAGCACAGTGTCGGGCACCATGTCTGCCATCCCATGCACCAGGC
ATGATTTTTATTCATCAAAACATATTTCTGCAGTAACCCAGGGTGATAGA
GCATTACAAGCAGGTAACTTTGATACAGCAGAAAGAATATTTGCACAGAC
CTTGAAGGCGGCAATCCGTGATAACAATGTTCGTTTGCAAGGCCTCTGTC
TACAGAGCATGGGGGACGTCTACATACGAAAGGCCACCAACAGAAGAAAC
TTCACNTACATACGAAGGGCCACCAACAGAAGACACTTCACCAAGGCGGC
AGCCTTGTACAATGCTGCAATGACCTGGGCACCGGGAGACCAGCACTGGA
GAGATGTCATAGTTCACAGAATCAAGTATGTAGAGAAATGTTTCCTTCTT
TGGGTGCAGGGCCACAAGTAGCATCAAGTTTCACTTTCATACAATAATGA
CGTCCACCATAAAGCTCGACTGAAAAAGATCCGACAGGAGTGTAGAGTGT
TGTTGCAGTGTACTCAGATGATATGTGATTTCAATGGTGACCCCATGGAA
TCCAGTGAAGCCAAGGACAAAGAAGCAAAATGGGTATCAGCTGTGCGCTC
CTTGTTCCACACAACAGCGGGACGAATGAAAGATTTTGTGAGACAACTGT
TAGCAGAATGTAGGGAGACCTTGGGCCCGCCACCCTGTAAGTACGCTATC
ATAGGCCTGGGGTCCATGGCTAGGGAAGAAATGACACCGTATTCTGATTT
TGAATTTGCAATACTGCTGGAAGAAATAGCACAAGAGCAGCATAAAGAGT
ATTTCCGTAACCTGACATCACTACTTCATCTGAAAGTGATCAATCTCGGT
GAGACCATCCTCCCTTCAATGGCCATCACATCCCTGAACAACTTTTACTC
CAATGAAGAAGAAGATAACTGGCTTTATGACTGGAAAACACCAAGAGGAT
TTGCATTTGACGGGGCCATGCCTTCTGCGAGTAAAAGCCCTTTAGGCAGA
GAGGCAGTTGACGGAAAGCCTGCTGTAGAACTAATCATGACTCCGACAGA
GATGGCATCTCTCCAAGAGAGGCAAGCCTTTGCTGATGAGGATAACGTTA
ACCATTTGTCTGATATCTTGTCAACTGTCACATGGGTAGAAGGAGACAAA
AGCCTGGTGGAAGACTATCAAGAAAGACTTGATTTAGATCCATCATACTT
GGTCAAGAAGGCACTCATTACCCTCTTTGACGATGCAAGCAAGTATCAAG
AGGACATAGTTTCTGCCTCCAAACCTGGATTCCAATATGACGTAAAAAAA
GAGATCTACCGCTTCCCAACTTTGACAGTCAGCAGTCTTGGTATTTGCTT
CGAATCAAAGAGGAACACCCCTTGGGAAGTCATTGATGCACTGAGAGACA
AAGAGCTGATCTCGGAGACCAGGGCACACAACCTGAGCGTGGCAATCAGC
ATAGCCACCTTGTTGCGACTGCAAACGTATCTGGCGTATTGCAGGCAAAA
GGAAGGAGTAACTACCCTCCCTGTCCTGCATCAAAGGGAGAAAAAAAGCG
GGGAGCAAGATCTGCCGCACAAGCTACCAAGCTCTGCTCTACTGATGCGT
TTCTACCAGACCAGCATACCCTTACAGATTTATGTTTATGTAGCTCTAGT
CATGAGCATTCCCCCCACTCTTGTAAAAGTACCGCTAAAACTGGTCCGAC
AGTTTCTTTCAGAACATCAAAGTTCAGAGGAAAGCGGCACACATGAGGGA
TCAGTCACATCATCGATGAGAGCCTGCGGTTCATCTTCGCTATTAGAAAA
TCTGGTGTCACTTGTCAAAACTGTTGAAAATCCATATAAGCCTTCAGCAT
TTTCACAATCACAGTCTAGTACTGGTCCAGCCAACGGTGGGGGCCAAAAT
TTAGAACCACATCAAAACTTGCCCACAGAGACAGCAGCTGATCCTGATGT
GGAAAACATTTTGCTTCAGTTGACAATATTCCAGCACAGGCTACCTGGAG
ACGTGTCCGAGCTTCTGGGTGCGGATCACGATTTCTACTGTAACAGTGAC
TTGCTGAGGGGACTGATTCACTACAGACTCATGCACTATCAGGAGGCAGA
GCCCCTCCTCCGGGCTGCATACCACAAGAAACCAAACAGACTCACACACG
GCTACCTCTGGACTCTACTGAGCCTTGGGAAGTATGATGAAGCTCTGAAA
GCAGCCCAAGAATTTACAGAGCTGCATCAGTTGTCTCTGGATGGTTGCTT
TGCATTGGCACATTTATACATTCGCATCGGTCAGTTTGAGAAGGCTCGTG
AGGTCTGTACAAAAGCTTTGGAGATGTTAGACATTAACTTTGATGCAGAA
CTATGGGAAATCTTGATATATTTACAGCTGGCTGATATCTCTACTAACCT
TGGGGAATACAGCAAGGCAAAGGAGCTGGCAGGTTTGATAGAGCAAATGA
TCTTTGAGACTAATGAAGAAGTGGTAAAAAAGCAACCCTTGATAATGTTG
AATATCAGATTCAACTTGGGTATATTGTTTTCCTCGTTGGGTCAGATGGT
CAAAGCACACTCCTGTCACAAGAAGACTATAAATATGTGCAACATGATCT
TTGGCATGAATGTAGCTCATCACATCACAGCCTCATGCTTTCGGGAGCTG
GCTCGCATCATGTATCGCCATAGCGACTGCAACACAGCCCTTTGGTACGC
AGACTTGTCCCTCAAGATGACACAAAACATATACAGTGACACTTGTCATC
CTGACGTCATCAAAAGTTTGAACGTTTTGTTTGAGATTCTTTGGGAACAA
GACAGAAATGAACAAGCCACGCTGATAGCCGAAGAGTCACTGGAACTAGC
TTTAAAGACAAGAGGACTGAACAAGACAAACCTTGCCCAGGTATATACCA
ACCTGGGAAAGGTAAGCAGTGATACTGGGGCCCATTCCAAGGCTATCTGG
TGCCACGAGGAAGCGCTGCGTATCGACCGAGAACATTACCACAACAAACC
TTCCGGAAACATAGCAGTCAGTCTGGAAGGCTTGGGTATCGCTTATTGGA
AAGCAGGGGACTATGCAATGGCATTCCAGCATGTGCAAGAAGCATTACAC
ATGCAAGAGGACCTCTTTGGAAAGGACACACCAAGGCCTAACACTGCTGA
AAGTCTCAGCATTCTAGGTTGCATAAAAAAGGACATGGGTGATCATACTG
AAGCTGTATGGTATCTTGAAAAATCTCTGTCAATGATGAAGGAGGTTTTT
GGTGGTCGTGTGACAGACCGAATGGTTGACACTATTCAAACACTTCAGGA
ACTTAGGTGGATGTCAGAGTAAAAACTATAGTTTTTGCAGCCTTACAGTG
AACAAGAGGGGAGGGTTCAAGAAATTTGCAAAAAGCTTGGGTACTGTAAA
TCTTGGAATGACTTCTCAAACTTCTATGCGCTTCCAATGTACAAATGTAC
TACTACTGTACTACAGAAATGTTTCAACTGTTAACTTGAAAAACTTTGAA
AGCCTCCTATTTTCCCTTTTACCTCGAAATTAAGTCCCGCAAAAATGAAT
GGATTTACAGTTACTGTAGACATACCACAGTCAAGCATTTCTCAACATGG
TCATTAGGTGTATGCTCACAGAACCAGTTCTTACTACAGGGTAGTTTTAA
CTTTAAAAAGTACTGTGTTGACTGTAGGCAATGTAAAGTCATTTCTAGCT
TATGTAGGAAACTCTTCAATTTTCTTCTGTCATACATAACGTTATAGTCA
GGAGGTTAGGAATTTGTATCTTGGGATCCAGATTTACTTAGTTGACACTT
TAATCATGACAGAGATAGAAATCAAATTAAACATTTTTTTGTCTAAAAAG
TGTCTTTAGTTGAATGGTGTTTGAAACTGAGTAGCTAAGTAGTAGTCCAT
ACTTTGGAGACTTTGTATATGGTCCACACAAATAAGGCCAAAATGCTTTC
TTATTAGAGGAGTCAGTGGCTGCTGAGCATTATGAGTAACTAAAGGTTTC
AATATAATCTCTGTTGTCACAAGTATAACCTCTAGCCACCCTCTACCTGT
TGTTTTGGGAACAGCCTTTGTACTGACAGCATCAAGATGAACCAAAATAT
GTGAGGACAATAATAGACAAGACAATACTAGTATGTTAACATCACATATG
TATTGTAGTTAGCATCTAATAGCGCCCTATTCTTCACCTATCTGTCTGCA
GACATATATTACTGTAGCAACAACCACATCTATACTGATATATTAAAATC
ATAAAATGAAATATGTTTCTTTTCACATCATTAAGTCTTGTTATGTTGTT
GATTGTTTGTATGTAAGGGGAGAAGGCCTTACAATGCAATATTGCAATTT
TAGCCCGATCCTCATAAAATAAATGTGGATAAAATAAAATAACAGCAGCA
TACAAGCAAGCAGATCTCTACTGACTAAAGCCCTGGAGCATTTTCACTTT
TGAACTTAAACAGATTTAAGAACCTTTGTTGACTTGACTTTTGTCTAA Coding sequence (CDS) from alignment at Sc0000255:266673..271970- >transcript:BL70649_cuf0 ID=transcript:BL70649_cuf0|Name=transcript:BL70649_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2805bp|location=Sequence derived from alignment at Sc0000255:266673..271970- (Branchiostoma lanceolatum)
ATGATATGTGATTTCAATGGTGACCCCATGGAATCCAGTGAAGCCAAGGA
CAAAGAAGCAAAATGGGTATCAGCTGTGCGCTCCTTGTTCCACACAACAG
CGGGACGAATGAAAGATTTTGTGAGACAACTGTTAGCAGAATGTAGGGAG
ACCTTGGGCCCGCCACCCTGTAAGTACGCTATCATAGGCCTGGGGTCCAT
GGCTAGGGAAGAAATGACACCGTATTCTGATTTTGAATTTGCAATACTGC
TGGAAGAAATAGCACAAGAGCAGCATAAAGAGTATTTCCGTAACCTGACA
TCACTACTTCATCTGAAAGTGATCAATCTCGGTGAGACCATCCTCCCTTC
AATGGCCATCACATCCCTGAACAACTTTTACTCCAATGAAGAAGAAGATA
ACTGGCTTTATGACTGGAAAACACCAAGAGGATTTGCATTTGACGGGGCC
ATGCCTTCTGCGAGTAAAAGCCCTTTAGGCAGAGAGGCAGTTGACGGAAA
GCCTGCTGTAGAACTAATCATGACTCCGACAGAGATGGCATCTCTCCAAG
AGAGGCAAGCCTTTGCTGATGAGGATAACGTTAACCATTTGTCTGATATC
TTGTCAACTGTCACATGGGTAGAAGGAGACAAAAGCCTGGTGGAAGACTA
TCAAGAAAGACTTGATTTAGATCCATCATACTTGGTCAAGAAGGCACTCA
TTACCCTCTTTGACGATGCAAGCAAGTATCAAGAGGACATAGTTTCTGCC
TCCAAACCTGGATTCCAATATGACGTAAAAAAAGAGATCTACCGCTTCCC
AACTTTGACAGTCAGCAGTCTTGGTATTTGCTTCGAATCAAAGAGGAACA
CCCCTTGGGAAGTCATTGATGCACTGAGAGACAAAGAGCTGATCTCGGAG
ACCAGGGCACACAACCTGAGCGTGGCAATCAGCATAGCCACCTTGTTGCG
ACTGCAAACGTATCTGGCGTATTGCAGGCAAAAGGAAGGAGTAACTACCC
TCCCTGTCCTGCATCAAAGGGAGAAAAAAAGCGGGGAGCAAGATCTGCCG
CACAAGCTACCAAGCTCTGCTCTACTGATGCGTTTCTACCAGACCAGCAT
ACCCTTACAGATTTATGTTTATGTAGCTCTAGTCATGAGCATTCCCCCCA
CTCTTGTAAAAGTACCGCTAAAACTGGTCCGACAGTTTCTTTCAGAACAT
CAAAGTTCAGAGGAAAGCGGCACACATGAGGGATCAGTCACATCATCGAT
GAGAGCCTGCGGTTCATCTTCGCTATTAGAAAATCTGGTGTCACTTGTCA
AAACTGTTGAAAATCCATATAAGCCTTCAGCATTTTCACAATCACAGTCT
AGTACTGGTCCAGCCAACGGTGGGGGCCAAAATTTAGAACCACATCAAAA
CTTGCCCACAGAGACAGCAGCTGATCCTGATGTGGAAAACATTTTGCTTC
AGTTGACAATATTCCAGCACAGGCTACCTGGAGACGTGTCCGAGCTTCTG
GGTGCGGATCACGATTTCTACTGTAACAGTGACTTGCTGAGGGGACTGAT
TCACTACAGACTCATGCACTATCAGGAGGCAGAGCCCCTCCTCCGGGCTG
CATACCACAAGAAACCAAACAGACTCACACACGGCTACCTCTGGACTCTA
CTGAGCCTTGGGAAGTATGATGAAGCTCTGAAAGCAGCCCAAGAATTTAC
AGAGCTGCATCAGTTGTCTCTGGATGGTTGCTTTGCATTGGCACATTTAT
ACATTCGCATCGGTCAGTTTGAGAAGGCTCGTGAGGTCTGTACAAAAGCT
TTGGAGATGTTAGACATTAACTTTGATGCAGAACTATGGGAAATCTTGAT
ATATTTACAGCTGGCTGATATCTCTACTAACCTTGGGGAATACAGCAAGG
CAAAGGAGCTGGCAGGTTTGATAGAGCAAATGATCTTTGAGACTAATGAA
GAAGTGGTAAAAAAGCAACCCTTGATAATGTTGAATATCAGATTCAACTT
GGGTATATTGTTTTCCTCGTTGGGTCAGATGGTCAAAGCACACTCCTGTC
ACAAGAAGACTATAAATATGTGCAACATGATCTTTGGCATGAATGTAGCT
CATCACATCACAGCCTCATGCTTTCGGGAGCTGGCTCGCATCATGTATCG
CCATAGCGACTGCAACACAGCCCTTTGGTACGCAGACTTGTCCCTCAAGA
TGACACAAAACATATACAGTGACACTTGTCATCCTGACGTCATCAAAAGT
TTGAACGTTTTGTTTGAGATTCTTTGGGAACAAGACAGAAATGAACAAGC
CACGCTGATAGCCGAAGAGTCACTGGAACTAGCTTTAAAGACAAGAGGAC
TGAACAAGACAAACCTTGCCCAGGTATATACCAACCTGGGAAAGGTAAGC
AGTGATACTGGGGCCCATTCCAAGGCTATCTGGTGCCACGAGGAAGCGCT
GCGTATCGACCGAGAACATTACCACAACAAACCTTCCGGAAACATAGCAG
TCAGTCTGGAAGGCTTGGGTATCGCTTATTGGAAAGCAGGGGACTATGCA
ATGGCATTCCAGCATGTGCAAGAAGCATTACACATGCAAGAGGACCTCTT
TGGAAAGGACACACCAAGGCCTAACACTGCTGAAAGTCTCAGCATTCTAG
GTTGCATAAAAAAGGACATGGGTGATCATACTGAAGCTGTATGGTATCTT
GAAAAATCTCTGTCAATGATGAAGGAGGTTTTTGGTGGTCGTGTGACAGA
CCGAATGGTTGACACTATTCAAACACTTCAGGAACTTAGGTGGATGTCAG
AGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000255 | genome | Sc0000255:266673..271970 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL70649_cuf0 |
| Biotype | protein_coding |
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