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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL37232_cuf2 >transcript:BL37232_cuf2-protein ID=transcript:BL37232_cuf2-protein|Name=transcript:BL37232_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=120bp
AIYVRKTLKCQEVALPADTKLECVAVHVSLGWLETLILVMYRAPHEKKVN
FISKVDKVLDYVCKVDRDTTIILGDFNENLLGSEDSQAMKSFLKTHGYVQ
VQGLTYRGDFYSSWKTLMYM Run BLAST on NCBI mRNA from alignment at xpSc0040027:2774..6858+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL37232_cuf2 ID=transcript:BL37232_cuf2|Name=transcript:BL37232_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4085bp|location=Sequence derived from alignment at xpSc0040027:2774..6858+ (Branchiostoma lanceolatum)
TGGCAATATATGTTCGGAAGACACTGAAGTGTCAGGAAGTAGCGTTGCCA
GCTGACACCAAGTTGGAATGTGTGGCTGTGCATGTGTCACTTGGATGGCT
GGAAACGCTGATTTTAGTCATGTATCGGGCTCCACACGAGAAGAAAGTGA
ACTTTATATCTAAAGTAGACAAAGTGTTGGACTATGTGTGCAAGGTGGAC
AGAGATACTACAATCATACTTGGTGATTTCAATGAGAACCTGTTGGGTTC
TGAAGACAGCCAGGCAATGAAATCATTCCTGAAGACACATGGGTATGTGC
AGGTAATTGAGGACCCATCTACTGCGAAAGGGACTCTTCTAGATCATATT
TACATGTCATCAGTAGTGCCATTAGTGAAGAGTGGGGTCATTCAGACTTT
CTACAGTTATCATGATGCTGTTTATTGTATGTTGTCTGAGGGAGCAGTAG
AGGGGCTTGAAGATGGTCACTAAGCACATGGTCCATGCTATTAACCCATG
CCACATCGCCAGCCATGTGCAGAAGGGCAGAAAATGTATATGATGGGGAA
AGGGCCCAGGTGTTGGTAAATACTCTGTCCATATAGGGTAGGCTGTTGTT
TTGAAAGTACAATGCATATGCTTTATGATACCTATGGCTAATATACCATT
TCAATCTGTACAGGTGCAAGGGTTGACGTACCGTGGTGACTTCTACAGTA
GTTGGAAGACCCTTATGTACATGTAGTTATAGGTTGGAAGTTTTTTTTTG
GTATACATAAAGCGTTGTGCTGTTCCTTGAGAACTGAGGTTGTACTACTT
GTTATTGTTGTTGTTGTTTTTGTTGTTGTGCTGTAGCTTGTACGGTAAGA
AAATACATAATTTATGGCCAGGTGTAGTCACCTTTGCTATACATCATGCA
CATGAGGACCGCATTAGCGTAGTATTAGCATAAACCAGGTGTTGAGGTCT
GCTTTTTCGTCTGTAGCCTGATTTATGGCCAGGTGTGTTTGACCTACATC
TGAAATATGCCAGGTAGAAGGGTCCACGTACCATGATGGTGACTTTTAGA
GTAGTTCGAAGAGCCTTTTGTAGTTCTTAGTACAAAGCGATATTTTTGTA
TACATAAAGTGTAGTTTTGTTAGTTCTTGTACTTGTATTGTAATGTTCAC
ATTGGTGACTAGTAGCCTAGGTGGGAGAGGTAATGTTGACATTGGTGACT
TCTAGAGTAGTTGGAAAAGCCTTTTGTAGTTGTTGGTTGGAAGCAATATT
TTTGTATACATAAAGTGTAGTGCAACAAGAGCACCTTGGGCAGAAGAGAT
ATTTTTGTTTACATAAAGTGTAGTGCAAGAGGAGCACTTTGGCAGAAGAG
ATATTTTGTGACTACTTCTTTAATTGTAATGTTTACATGAAGTGTAGTGC
AACAGGAGATGCCAAAGTGCATGTAGAGTCCTTTGTTGTCCTGTATCGGA
ATTAAAGTTACTTGAGTTGCACTACTTGTTGTTGTTGTTGTGTTGTTTTT
GTTATTGTGCTGTAGCTTGTACGGTAAGGAAATACATGATATATGGCCAG
ATGTTTTCACCTTTCCTCAAGGTACCTTCATCTGAAATATGACATCCGCA
GCTTTTACAGTAACGGAAATACAACTTTCTGCATAAATTATGGAAATGAG
GTCCTCAGTAGCACAATATATGTCCAGGTTTGTTGACTTTTCCATAAAGG
TACCGTTATCTGAAATATGACATCCGCAGCTTTCACGGTAAGAAAAATAC
AAGTTTGTACATAAATCATGCACCTGACGTCCTCATTAGTATAATATATG
GCCAGGTGTGCTCACCTTTCCTCAAGGAACCTTCATGTGAAATATGACCT
CTGCAGCTTTTGCAAATGAAGTCCTCTTAAGCATAACATATGGGCAGGTG
TGTTCACCTGTCCTTAAGGTACCTTCATCTGAAATATGACATCTGCAGCT
TTTACGGCAAGGAAAATACAACTTTCTGCATAAATTATGCAAAGGAGGTC
CTCTTCAGCATAAAATATGGGCAGGCGTGTTCACCTTTCCTCAAGGTACC
TTCATCTCAAATATGACATCCGCAGCTTGTACGGTAAGGGAAATATAAGT
TTGAACATAAATTATGCACATGAGATCCTCATTAGCATAAAATATGGGCA
GGTGTGTTGACCTTTCCTAAAGGTACCTCCTTCTCAAATATGACATCCTC
AGCTTTTACGGTCAGGGAAATATAAGTTTCTGCATAAATTATGCAAATGA
GGTCCTCATTAGCATAACATATGGCCAGGTGTGTTGACCTTTCCTAAAGG
TACCTCCTTGTCAAATATGACATCCCCAGCTTTTACGGTAAGGGAAATAT
AAGTTTCTGCATAAATTATGCAAACGAGGTCCTCATTAGCATAACATATG
GCCAGGTGTGTTCACCTTTCCTTAAGGTACCTCCATCTGAAATATGACAT
CCGCAGCTTTAACGGTAAGGGAATTATAGGTTTCTGCATACATTATGCAA
ATGAGGTCCTCATTAGCATAACATATGGCCATGTGTGTTCACCTTTCCTT
AAGGTACCTCCATCTCAAATATGACATCCGCAGCTTGTACGGTAAGGGAA
ATAAAGGTTTGAACATAAATTATGCACATGAGATCCTCATTAGCATAAAA
TATGGGCAGGTGTGTTGACCTTTCCTAAAGGTACCTCCTTCTCAAATATG
ACATCCTCAGCTTTTACGGTAAGGGAAATATAAGTTTCTGCATAAATTAT
GCAAATGAGGTCCTCATTAGCATAACATATGGCCAGGTGTGTTGACCTTT
CCTAAAGGTACCTCCTTCTCAAATATGACATCCTCAGCTTTTACGGTAAG
GGAAATATAAGTTTCTGCATAAATTATGCAAATGAGGTCCTCATTAGCAT
AACATATGGCCAGGTGTGTTGACCTTTCCTAAAGGTACCTCCTTCTCAAA
TATGACATCCTCAGCTTTTACGGTAAGGGAAATATAAGTTTCTGCATAAA
TTATGCAAATGAGGTCCTCATTAGCATAACATATGGCCAGGTGTGTTGAC
CTTTCCTAAAGGTACCTCCTTGTCAAATATGACATCCCCAGCTTTTACGG
TAAGGGAAATATAAGTTTCTGCATAAATTATGCAAACGAGGTCCTCATTA
GCATAACATATGGCCAGGTGTGTTCACCTTTCCTTAAGGTACCTCCATCT
GAAATATGACATCCGCAGCTGTAACGGTAAGGGAATTATAGGTTTCTGCA
TACATTATGCAAATGAGGTCCTCATTAGCATAACATATGGCCATGTGTGT
TCACCTTTCCTTAAGGTACCTCCATCTCAAATATGACATCCGCAGCTTGT
ACGGTAAGCGGGTAAGGGAAATAAAGGTTTCTGCATACATTATGCAAATG
AGGTCCTCATTAGCATAATATATGGCCAGGTGTGTTCACCTTTCCTAAAG
GTACCTCCTTCTCAAATATGACATCCTCAGCTTTCACGGTAAGGGAAATA
TAAGTTTGTGCATAAATTATGCAAATGAGGTCCTCATTACCATAACATAT
GGCCAGGTGTGTTGACCTTTCCTAAAGGTACCTCCTTCTCAAATATGACA
TCCGCAGCTTTTACGGTAAGGGAAATACAACTTTCTGCATAAATTATGCA
AATGAGGTCCTCATTAGCATAACATATGGCCAGGTGTGTTCACCTTTCCT
TAAGGTACCTCCATCTGAAATATGACATCTGCAGCTTTTACGGTAAGGGA
AATAAAGATTTCTGCATAAATTATGCAAATGAGGTCCTCATTAGCATAAT
ATATGGCCAGGTGTGTTCACCTTTCCTAAAGGTACCTCCTTCTCAAATAT
GACATCCGCAGCTTTTACGGTAAGGGAAATGTAAGTTTCTGCATAAATTA
TGCAAATGAGGTCCTCATTAGCATAACATATCGCCAGGTGTGTTCACCTT
TCCTTAAGGTACCTCCATCTCAAATATGACATCCGCAGCTTGTAAGGCAA
GGGAAATATAGGTTTCTGCATAAATTATGCAAATGAGGTCCTCATTAGCA
TAATATATGGCCAGGTGTGTTCACCTTTCCTTNAG Coding sequence (CDS) from alignment at xpSc0040027:2774..6858+ >transcript:BL37232_cuf2 ID=transcript:BL37232_cuf2|Name=transcript:BL37232_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=726bp|location=Sequence derived from alignment at xpSc0040027:2774..6858+ (Branchiostoma lanceolatum)
GCAATATATGTTCGGAAGACACTGAAGTGTCAGGAAGTAGCGTTGCCAGC
TGACACCAAGTTGGAATGTGTGGCTGTGCATGTGTCACTTGGATGGCTGG
AAACGCTGATTTTAGTCATGTATCGGGCTCCACACGAGAAGAAAGTGAAC
TTTATATCTAAAGTAGACAAAGTGTTGGACTATGTGTGCAAGGTGGACAG
AGATACTACAATCATACTTGGTGATTTCAATGAGAACCTGTTGGGTTCTG
AAGACAGCCAGGCAATGAAATCATTCCTGAAGACACATGGGTATGTGCAG
GTGCAAGGGTTGACGTACCGTGGTGACTTCTACAGTAGTTGGAAGACCCT
TATGTACATGTAGGCAATATATGTTCGGAAGACACTGAAGTGTCAGGAAG
TAGCGTTGCCAGCTGACACCAAGTTGGAATGTGTGGCTGTGCATGTGTCA
CTTGGATGGCTGGAAACGCTGATTTTAGTCATGTATCGGGCTCCACACGA
GAAGAAAGTGAACTTTATATCTAAAGTAGACAAAGTGTTGGACTATGTGT
GCAAGGTGGACAGAGATACTACAATCATACTTGGTGATTTCAATGAGAAC
CTGTTGGGTTCTGAAGACAGCCAGGCAATGAAATCATTCCTGAAGACACA
TGGGTATGTGCAGGTGCAAGGGTTGACGTACCGTGGTGACTTCTACAGTA
GTTGGAAGACCCTTATGTACATGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| xpSc0040027 | genome | xpSc0040027:2774..6858 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL37232_cuf2 |
| Biotype | protein_coding |
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