transcript:BL18621_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL18621_evm0
Unique Nametranscript:BL18621_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL18621_evm0

>transcript:BL18621_evm0-protein ID=transcript:BL18621_evm0-protein|Name=transcript:BL18621_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=77bp
MDNNLFFAIKVYFGEPRLRPMGSPGSPPKPQPELHAVLPIGQRKNHHGNG
SGMDCAQEAGRGPAAFRRKETFLEDHR
Run BLAST on NCBI

mRNA from alignment at Sc0000035:717864..718833-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL18621_evm0 ID=transcript:BL18621_evm0|Name=transcript:BL18621_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=970bp|location=Sequence derived from alignment at Sc0000035:717864..718833- (Branchiostoma lanceolatum)
ATGGACAACAACTTGTTCTTCGCTATCAAGGTTTACTTTGGTGAGCCACG
TTTGGTAAGTTCCTTAATCATCTTTGCCAAGAAGGGTTTTACGTTTATCA
TCTATGTGTGTAGGTATTTGTGTGTACCTGTGTAACGTTACCGGTGTTTG
TGATCACACAAGAGTAAAACGTCGACCTGTCGCAAGGATATATATCATCT
AACGTTAGGTTCTATCAACCTCCTTGCACATGCAATGGTGTCTCAAATTG
AGTGGCCTAAACTCTACTGTAACTCTTGTTCACGCCCCCTAGCGGGAACC
CGAGATCACAGACGAGCCCGGCTCCCTGTACAACTACATCATGTCGGTGA
CGCTGACGTTGACGCTTGCGTTGTTACTGGGTTTGTTGGTCCATGTGACG
GTGCGAAGACTCACATGGTGCCCTCCTCTCAAGTTCACCCGGGAACAAGG
TCAGCTTTAACGTTATGCCCGACCAAATTTGACTGAAGTATCTACATGTA
ATGATTAAATCTCCACCTGTCCACCATAACCCTTTGGGGCTGAAAAAATT
GTCTAAATTGACCTGCCTAATACATTTGTACCCTTTTGCCTGTAATATTA
AACCTATAGATGGTTGAATGAAGCTTCAGTTTGAAGAACGCTGGTGGGGG
AGTAACCTACATTGACACTGCCAAAAAAAAGTTGTGGGAAAAATCCTAGG
TAGACATTACTTTTTTAATGATTTACACAAACACCTATTCGGGTAATGAT
CATTGTTGTAAAACCTTCCAAATTTTTCTCTAATGCACAGCGGCCAATGG
GGAGCCCCGGGAGTCCACCCAAACCCCAGCCGGAGCTGCATGCAGTGCTT
CCCATCGGACAGAGGAAGAATCACCACGGCAACGGCTCAGGCATGGACTG
TGCACAAGAAGCGGGGCGGGGCCCGGCCGCTTTCCGCCGAAAAGAAACGT
TCCTCGAAGACCATCGCTAG

Coding sequence (CDS) from alignment at Sc0000035:717864..718833-

>transcript:BL18621_evm0 ID=transcript:BL18621_evm0|Name=transcript:BL18621_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=468bp|location=Sequence derived from alignment at Sc0000035:717864..718833- (Branchiostoma lanceolatum)
ATGGACAACAACTTGTTCTTCGCTATCAAGGTTTACTTTGGTGAGCCACG
TTTGCGGCCAATGGGGAGCCCCGGGAGTCCACCCAAACCCCAGCCGGAGC
TGCATGCAGTGCTTCCCATCGGACAGAGGAAGAATCACCACGGCAACGGC
TCAGGCATGGACTGTGCACAAGAAGCGGGGCGGGGCCCGGCCGCTTTCCG
CCGAAAAGAAACGTTCCTCGAAGACCATCGCTAGATGGACAACAACTTGT
TCTTCGCTATCAAGGTTTACTTTGGTGAGCCACGTTTGCGGCCAATGGGG
AGCCCCGGGAGTCCACCCAAACCCCAGCCGGAGCTGCATGCAGTGCTTCC
CATCGGACAGAGGAAGAATCACCACGGCAACGGCTCAGGCATGGACTGTG
CACAAGAAGCGGGGCGGGGCCCGGCCGCTTTCCGCCGAAAAGAAACGTTC
CTCGAAGACCATCGCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL18621gene:BL18621Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL18621_evm0-E1BL18621_evm0-E1-1564476830-188969Branchiostoma lanceolatumexon
BL18621_evm0-E2BL18621_evm0-E2-1564476830-188967Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL18621_evm0transcript:BL18621_evm0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000035genomeSc0000035:717864..718833 -
Properties
Property NameValue
Transcript idBL18621_evm0
Biotypeprotein_coding