transcript:BL16955_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL16955_evm0
Unique Nametranscript:BL16955_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL16955_evm0

>transcript:BL16955_evm0-protein ID=transcript:BL16955_evm0-protein|Name=transcript:BL16955_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=82bp
MYRYLVCSLTGEYSQKDLNLPRKLPSREGSPLSFAEDSPLTEMGWFQARL
TGEAMKRAGVHIRQVYSSPSLRCVQTADAILD
Run BLAST on NCBI

mRNA from alignment at xfSc0011787:454..938-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL16955_evm0 ID=transcript:BL16955_evm0|Name=transcript:BL16955_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=485bp|location=Sequence derived from alignment at xfSc0011787:454..938- (Branchiostoma lanceolatum)
ATGTACAGATATCTTGTTTGTTCACTGACAGGTGAATACAGTCAGAAGGA
CCTGAACCTTCCCAGAAAACTACCCAGCAGAGAAGGCAGCCCTTTGAGTT
TTGCAGAGGACAGCCCTCTAACTGAGATGGGCTGGTTCCAGGCACGACTT
ACAGGTACCTGTCCTTACATGAATGAGCTGTCTGCCTGCAGAAGAAGGTC
TTGATGCCTTTTGTCCAAAATCATGTGAAAGTTCCGTTGATGAAGCCTAA
ACATTGTAAGCTTGTATGATATTACTAAGACTTCTCAGGAGATACTATGA
ATAAAATGAGAAGTTAACAAATATTTCACTGACTCCGAGGTATTTGAGCT
CTTTGATTCCTTGTTTGATGATGAAAATTTTTTTCCCAACAGGTGAGGCT
ATGAAGAGAGCAGGTGTGCACATCCGCCAGGTGTACTCCTCCCCATCTCT
CAGGTGTGTGCAGACTGCTGATGCCATACTGGATG

Coding sequence (CDS) from alignment at xfSc0011787:454..938-

>transcript:BL16955_evm0 ID=transcript:BL16955_evm0|Name=transcript:BL16955_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=494bp|location=Sequence derived from alignment at xfSc0011787:454..938- (Branchiostoma lanceolatum)
ATGTACAGATATCTTGTTTGTTCACTGACAGGTGAATACAGTCAGAAGGA
CCTGAACCTTCCCAGAAAACTACCCAGCAGAGAAGGCAGCCCTTTGAGTT
TTGCAGAGGACAGCCCTCTAACTGAGATGGGCTGGTTCCAGGCACGACTT
ACAGGTGAGGCTATGAAGAGAGCAGGTGTGCACATCCGCCAGGTGTACTC
CTCCCCATCTCTCAGGTGTGTGCAGACTGCTGATGCCATACTGGATGATG
TACAGATATCTTGTTTGTTCACTGACAGGTGAATACAGTCAGAAGGACCT
GAACCTTCCCAGAAAACTACCCAGCAGAGAAGGCAGCCCTTTGAGTTTTG
CAGAGGACAGCCCTCTAACTGAGATGGGCTGGTTCCAGGCACGACTTACA
GGTGAGGCTATGAAGAGAGCAGGTGTGCACATCCGCCAGGTGTACTCCTC
CCCATCTCTCAGGTGTGTGCAGACTGCTGATGCCATACTGGATG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL16955gene:BL16955Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL16955_evm0-E1BL16955_evm0-E1-1564476830-541778Branchiostoma lanceolatumexon
BL16955_evm0-E2BL16955_evm0-E2-1564476830-541776Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL16955_evm0transcript:BL16955_evm0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0011787genomexfSc0011787:454..938 -
Properties
Property NameValue
Transcript idBL16955_evm0
Biotypeprotein_coding