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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL16854_cuf0 >transcript:BL16854_cuf0-protein ID=transcript:BL16854_cuf0-protein|Name=transcript:BL16854_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=217bp
MQDMGRIDWRHSNSLPRRPHSLARASMLSARTDKTGSTASGYHSAMESLD
ESGRLRKERLGTAGYLKSIEDEGDHEEDPLAHPKKERPTHTERPTLPEEP
NIHREDDGERLRXRRGTVEIRTLDIRGVYNPLTDTSSGRERKGGGHTKVG
KPTDENGSSVHSWLCSTRTQGKSSGSRYRLGRRDWLYHRRGVTRRRFSHC
IGQYDFGTARSRSNTKD Run BLAST on NCBI mRNA from alignment at Sc0000107:661870..665101- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL16854_cuf0 ID=transcript:BL16854_cuf0|Name=transcript:BL16854_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3232bp|location=Sequence derived from alignment at Sc0000107:661870..665101- (Branchiostoma lanceolatum)
TGCTGACATAGCATTTCCAGTAAAGTGATCCGCAATGAAGTAATTTGGAT
ATCTAAAATTCTGTCAGCAGATGATATAATATATAGATATATATATAACG
TTGATATGTAATATGAAAATCGATATAGAAAAAAGGGAAAGCCCAAATTT
ACATTTAATACAAATGCTGTGGTGCATAGACCACCTAATGTCCAAAGCTA
TGTGGACGTTAGGAGGTTCTTGACTTAGAACCACAGGAATTTAGATAGAA
TGGCCACGAAGTCCTGTGCAATAGTTAAAGAGAGAAGTGAATAACTAAAA
ATGTCCTTTCATAAATACCAGCGCTAAAGTATGCTAAGGAGTATCAAAAA
GTGGCCTTTAATGGAAGAAACTTACATATTGTAATGACATGACAGGGATA
TCACACTTGCCATCTTACCATCATATACATGTATGTGATAAAGACCATGC
ACCATAGTCGAGCAACTAATAGTATACATTTTTAGAGACTAACGTTTGTA
ACAAAAATAAGATGTTTATGCTCTCGAAGTTCATTTCATGAGATTAATAC
TAGTGACTTTAATCTGTATCACGTTGGTACTACTACCTAGTATACAATTA
TCTCTGCTACCGTAACACACAGAGATGAAATCGTTTGCTATTAGAGTTCT
GTATCTTGTATGTGTCTGTGTGTTAGACTCACTCTAGATGCAAGCTTGGG
CAGTTGCTGTGCACGAATTAGATTGTATCCGACTGTGTCATTTTTAGCCT
TGTTACCGACCAGATATGTCTATTGCTCGAAACAAAGCGATGCCTGATAT
GAGCCACGACGAAACTGCCTGTACGACCAAAATGATTGCATGTCATTTGA
GTGGAACATAGCCATAGGGATATGCATTTCAGCGCCATTTACTAACGCAT
TGACGTTTTGAATCTGCGTGGCGTGAATGGCGTTACATGTTCATCATCGG
ACTGCACCTATCGTATAGTGTTATCGAATGTCCGAAGTCTTCCAAATGTG
TGTGTGTGGCACTGATGTCAAGTTTGATGCACGACACCTTCACTTGGAAC
CGCCATCTGTACTGTCGCTAACAGAGCATGGTGCCTGGGCAGGCATATAG
CGGTGGTGAAATGTTATGTCACGATGCAGTCGCTCATGTAAACTAAGAGG
GAATGTGACCATTTCCCATTGCTAGGTGGTGGACAAGGATTGCGACCAGT
CTACGTGGCCAGTATCGTGGTAGCAGTGGCCATCTTATTCACCTGCGTGG
CGCTGTGCTGTCTGAAATGTCGTCGGACGGACCACCGGCGGCGGCGGCGC
GACGCCAAGAACGAGAAAGTCCGGCGGTGGATCGCCTCTATCCCTGCCGA
CGTAGACTTCGACTTCATCCCGATGCAGGACATGGGCAGGATCGATTGGA
GGCACAGCAACAGCCTGCCCAGGCGCCCTCACAGTCTGGCCCGTGCGTCC
ATGCTCAGCGCTCGGACCGACAAGACTGGCTCCACCGCCAGTGGATATCA
CTCCGCCATGGAGTCATTGGACGAATCGGGTCGCCTGAGGAAAGAACGCC
TAGGGACTGCGGGATACCTCAAGTCCATAGAGGATGAAGGTGACCATGAA
GAAGACCCTCTGGCTCATCCAAAAAAGGAGCGTCCAACGCACACAGAACG
TCCGACCCTCCCAGAAGAGCCAAACATACACCGTGAAGACGACGGGGAAC
GTTTGAGATTNCGACGGGGAACGGTTGAGATTAGAACGCTTGATATACGC
GGGGTATACAACCCCCTCACAGACACGAGCAGTGGAAGAGAAAGAAAAGG
AGGAGGTCATACCAAAGTCGGAAAGCCAACAGATGAGAATGGATCGTCTG
TCCATAGCTGGCTATGCTCCACGAGAACCCAAGGTAAATCCAGCGGATCC
AGGTACCGACTCGGCCGCAGAGACTGGCTATACCACCGCCGTGGAGTCAC
CCGACGACGATTCTCCCATTGCATCGGACAGTACGACTTTGGAACGGCCA
GATCTAGAAGTAATACTAAGGATTGACGAGGAGACAGAAAAAGAGAAAGA
AACATTAACTACAGCCGATGATATTGTTGTGAACGACATAGCTTTAGACT
AAGAGTCAGGTGGTGTACATATCGTTGGGTTATTGTTAGATTGTTGGTCG
GGGATGTAATGTTAGCAGTGTTGCTTTATTTCCAATAGAGAATGCATGTG
CAATCTTTGAAGAATAAGGACGGCGTTTGCCAATGGATACGAAGGAGATA
TTTAAGAAGCCACGAGAGGCGCACTCAGGGGGAACAAGTGGAGAAGTCCA
CAGCAACTGTTGCTGCTATTCTACAAGTTGGCGAAGAGTTTTGAAGAGGA
CATTCCTTACGTTGTTGTCAAATCATGTCGATGAACCTACCTCCCTTGTA
AGCAAAACAGCCAACCTGCTATTCTTCCCTTTGTACAAACGCCATTTTGA
AATCATTGTCAGTTTTCTGCTCATATTCGAATTAAAGTTCATCTGTAGCT
AAAATTGATTTTATAAACTTTTATACCCTATTTTCGTACAGTAGGTAAAG
CGATTACCAACAGGCTTTCGGTCAGTCCTCTGACCCTTCTCAATTTAAAT
GGGTGAGGTACTATATATAGTACCGACTGCTGTTACAGACTACCGGGCAC
CATTGACCCGTTGATGACGTCACACTTCCATTCAGGTCACGTGACAAAGG
CTGAGGGTCATTTCAACTTGAGAAGGGTCAAAGACTCAGAGGACTGACCG
AAAGTTTGCTGGTAAGCGCTTTTCTTTATGTACGAAAATGGCGTATAAAA
TATTCATAAAGTTTTCTGCTAATTTGCATTCTTGTAGTGAAATTGTGACA
ATGAAGACTTTCTTGCAAGCTTAATAAATAGTACCAAGGAGAATGTGTCC
AACGGCACAAACATTTCAAATTACTCTGTAGCAAAGATAAAGATAGAAGA
CAGGGATAGTATCTTCTGGAAGAGATAAGTTTATTCTCATGACTGTCTGA
TAAAAATAAACCATCTCTGCACACTAGCAACACTTATTACTCTTCTATAA
GTCTTCCTGAATACAGACGGCAGTACCTAATAGTGATGATTCTGGTCGTA
ATATTTTCTGTTCATACATTGTAATGCGATAAGACCAGATAAAGCACAGG
TACAATATAGATATGATTATTTGATTGTTTGTGATAAATATCATTCCCTA
TCACAACTTGGCACATAGAAACACAAGCAGCT Coding sequence (CDS) from alignment at Sc0000107:661870..665101- >transcript:BL16854_cuf0 ID=transcript:BL16854_cuf0|Name=transcript:BL16854_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=654bp|location=Sequence derived from alignment at Sc0000107:661870..665101- (Branchiostoma lanceolatum)
ATGCAGGACATGGGCAGGATCGATTGGAGGCACAGCAACAGCCTGCCCAG
GCGCCCTCACAGTCTGGCCCGTGCGTCCATGCTCAGCGCTCGGACCGACA
AGACTGGCTCCACCGCCAGTGGATATCACTCCGCCATGGAGTCATTGGAC
GAATCGGGTCGCCTGAGGAAAGAACGCCTAGGGACTGCGGGATACCTCAA
GTCCATAGAGGATGAAGGTGACCATGAAGAAGACCCTCTGGCTCATCCAA
AAAAGGAGCGTCCAACGCACACAGAACGTCCGACCCTCCCAGAAGAGCCA
AACATACACCGTGAAGACGACGGGGAACGTTTGAGATTNCGACGGGGAAC
GGTTGAGATTAGAACGCTTGATATACGCGGGGTATACAACCCCCTCACAG
ACACGAGCAGTGGAAGAGAAAGAAAAGGAGGAGGTCATACCAAAGTCGGA
AAGCCAACAGATGAGAATGGATCGTCTGTCCATAGCTGGCTATGCTCCAC
GAGAACCCAAGGTAAATCCAGCGGATCCAGGTACCGACTCGGCCGCAGAG
ACTGGCTATACCACCGCCGTGGAGTCACCCGACGACGATTCTCCCATTGC
ATCGGACAGTACGACTTTGGAACGGCCAGATCTAGAAGTAATACTAAGGA
TTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000107 | genome | Sc0000107:661870..665101 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL16854_cuf0 |
| Biotype | protein_coding |
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