|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL07490_cuf10 >transcript:BL07490_cuf10-protein ID=transcript:BL07490_cuf10-protein|Name=transcript:BL07490_cuf10|organism=Branchiostoma lanceolatum|type=polypeptide|length=177bp
HDLPDAALDSFCTSVGDHMLMREGHPGYFAYVPGNSLYPSAIGDFLAAAF
NPYALVNYACPAAVQMQHSLIRWVARLFGYPETCAGNLTSGGTVGNLIAM
ATARDAKKLQAKDYHRCVVYLSELTHDGIGKVLHTIGMGESVIRKVPVTE
RFGMDPEKLADLIEKDVEEGLIPFAIA Run BLAST on NCBI mRNA from alignment at Sc0000112:454103..457650- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL07490_cuf10 ID=transcript:BL07490_cuf10|Name=transcript:BL07490_cuf10|organism=Branchiostoma lanceolatum|type=mRNA|length=3548bp|location=Sequence derived from alignment at Sc0000112:454103..457650- (Branchiostoma lanceolatum)
CATGACCTTCCAGATGCGGCCTTGGACAGTTTCTGCACCTCGGTAGGAGA
CCACATGCTGATGCGAGAAGGACATCCGGGGTACTTTGCCTACGTGCCGG
GCAACAGCTTGTATCCCTCCGCCATCGGGGACTTCCTGGCAGCAGCGTTC
AACCCCTACGCCTGTAAGTTGGTAGCTGTGTTCCTGGATATCATGACCAC
CGCACCAGCTTGGTTAGCACACCATCGGGAGCACCACGGTATCTCGACGG
CGCTGGGAGTGATGCCGGCCCGTCCAGGCAGATTAACGTGCCGGGAGAAT
GGGGTGGTGGTTCTACGGGCTTTGCTTAATTAGTTATCTCACTTCAATTA
TATTGATAAAACGGATTTCTCATAGTTCTGGTTCACACTTTTTTTCTTTA
AATCAAGTAAACAAAAATCAAGTAAATTGTATACCATTCCCCCAACGACT
TTATTATGTTAATGTATATATTGCATGGTTATTACTGAGTCAAATGATTT
TATATTGTTTTATGCATTGTATTGTATTGCATTAACTATGTATGTATCAT
GTTAGTGTAAGGATCTTACTGTATGTTCGTCTGTATTTGTGGGTCAGCTG
TTACCAGCGAAAGCTGCCTAGGCTGACCCAGTGCAATGACCTGTCTTTCA
TTTTCAATAAATACAAATACAAATACAAACAAAAAGCTGATTGCTGAAAT
TTGAGTCCTCGTGATTTTGTGTCGGCAGTGGTGAACTACGCCTGTCCTGC
GGCCGTCCAGATGCAACATTCCCTCATCCGCTGGGTGGCGCGCCTCTTCG
GCTACCCAGAAACCTGTGCGGGAAACCTGACGTCAGGGGGAACGGTGGGC
AATCTCATTGCCATGGCAACGGCAAGAGATGCGAAGAAACTACAAGCGAA
AGATTATCACAGGTTTACAGATCCAGAAATATTCATATTGATGGTAGCAT
TAACTACTGATTATAATAATAATAATAGTCTTTATTGCATATTCCTGCCC
AGAAGGACTAAATGCACAGAAAACCACACATGGTCTTTAAGGAGCATAAT
GTAAAACATAGATTGATAAAATGCTACATTCTAATAACCTTTATTGTACA
TCCATGCCCTATCACGGGCTAAGTACAGGCATATAGATACAAAATATATG
GTAATGTTCATATAATGACACTGACAGGATTTCTAATACTATTCTAAAAC
AATGGTCCTTAAACTACTCTATTTCATAGGTTCGGATTCCATACCTTAAG
GCTAAAACATCTTTAGGACCGCATCTGTAAGCAGCGACACCTAGCTGTAG
TACAAGGAAAACCAGTCAGCATTTCCCTGAGGAAGTTGACAGATGGTCAC
CGAAACGTCGGTTCAATGAACCGCTTCGTTATTCAAATATATTATTATTA
TTCAGTGACTTACAAACCTGATGAAACTATTCACGGAGGCGGCTAAAACA
TTTGCCTGGCAATTACTAATCGATAATTGTGTTTGATTTTGCCGAAGAAT
TTTTGGAGTTGTACCCGTTTTGGAAAACCGTTTCCGTTGTATAACCTTCG
CTTTTTGTTATTTCTAGGTGCGTTGTTTACCTGAGCGAACTGACCCATGA
CGGCATTGGGAAGGTGTGTAATGGTTCCATCACGCTGACAATCTTTTCAT
TTCTGTCATCATGGATCACTTGTACTAACAAGGAGATCCAAAACTATACA
ACTTGATATCCCTCCAAAGAGCAATCTACCACTCAAAAAGAATGACCATA
GCTTGTCCAGAACACGAGATATCAAAACCGGAAGTTCTACTGCAGTACCT
TAGAAAGTTGCTAGGTGGTAAAAAATATAATAATTTCGAGGTCTTATCAA
GACCTACCCACCTACTAATATGAAGACAATCTACCCTGGCATTCACTAGT
TACTAGTATTCTGTTCTCAAATACACACACACACAAACAAACAAAGAAAC
TAACACGAAAACATAACTTCTAGAATCTTGGCGAAGTTCATTATTTGTAT
GCTTGGTTGATGATGCCATGTTGTTTCTGTGCTGCAGGTTTAGTTGACCT
TGACCACGACATGTTTCTGTGCTGCATGTTCTGTTGACCTTGACCATGAC
ATGTTTCCGTGCTGCATGTTTGGTTGACCTTGACCATGACATGTTTCCGT
GCTGCATGTTTGGTTGACCTTGACCACGACATGTTTCCGTGCTGCAGGTT
TAGTTGACCTTGACCATGAAATGTTTCCCTGCTGCAGGTTTAGTTGACCT
TGACCATGAAATGTTTCCCTGCTGCAGGTTTAGTTGACCTTGACCATGAA
ATGTTTCTGTGCTGCAGGTTCTCCACACTATCGGGATGGGAGAGTCCGTT
ATCCGGAAAGTCCCCGTCACCGAGCGGTTCGGGATGGACCCGGAGAAACT
AGCCGACCTCATAGAGAAAGATGTAGAGGTGCGTACACATCACAAGTCAT
CACAGTTCCAACATGGTCCCGCTGAGCATGTTCTTGTTAACACTGCTTGT
AATGTTTTTGCACCTCATGTTTGATTGTACGGTTACAATGTCTGTAAAGC
CCCTGTCACACATAGTCGTCCATGGCCTCCCGACCTTCTCTATACCATGG
CTGGAAGTTAAGCCCCTGTCACACATAGTCGACCATGGCCTCCCGACCTT
CTCTAGACCATGGTTTGGAGAGTTTGTCGTAAACAATATCATCAGTCCGG
GTATTCGAACCCAGAACCAAGTCAACAACCCTACTAGTCCAGCGGCAGAG
CTGAAAAATTGTGCGAATGTGCCTAAAAGCACCAAATTTGACTCACACGT
GTACTTGAATGTACCCTTAACAAGTATAGATATGGCGGCCTCTCAAATCT
ATGCCGTTGGACTATTAGACCGTCTTGCCACCTTTTATCTACAGGAAGGG
TTGATTCTGTTTGCCATTACCGCAGCCACGAGTACTATAAACCAGAGGCG
TAGACCCGATAACAGACCGGACTTGCTGGGGATTCTAACCCAGAACCTTT
AGATTCTAAATCAACAACCCTAACAACAAGACCACCATGTCTGCAGGAAG
CTGATCCCGTTCGCCATCGCTGCCCACATGGGCACCACAGACGTGACAGA
GACCTCAACCTTCTCTTTCATCTTTCCTTCCCTCCATCATGACCCCATAG
TGTGACAGACTTACACCTTCCATTTCATATGGTTGATCTTTCATTCCCTC
CATCTCATGTCTGCAGGAAGGGTTGATCCCGTTTGCCATCGCCGCCACCA
CGTGTGCCACAGACGTGGGCTCGGTGGACCCCATCGCCGAACTGGCCGAC
TTGGCGGAGTAGGAAAGGTCCTGAGTGTGTGACAGGGGCTTTCCCTTTCA
TCTCTCTAATGTTCCCTTCACTCAACCGTCTTTTTGCAGGAAGGGCTGAC
TCCGTTCGCCATTGCCGCCATTAGCACCATAGATGTGGGCTCAGTCCCCA
GTGTGACAGAGACTTGAACCTTCTCTTTCATATCGTTGATCTTTCATTCC
CTCCATCTCATGTCTGCAGGAGGGATTGATTCCTTTCGCCATCGCTGC Coding sequence (CDS) from alignment at Sc0000112:454103..457650- >transcript:BL07490_cuf10 ID=transcript:BL07490_cuf10|Name=transcript:BL07490_cuf10|organism=Branchiostoma lanceolatum|type=CDS|length=2655bp|location=Sequence derived from alignment at Sc0000112:454103..457650- (Branchiostoma lanceolatum)
CATGACCTTCCAGATGCGGCCTTGGACAGTTTCTGCACCTCGGTAGGAGA
CCACATGCTGATGCGAGAAGGACATCCGGGGTACTTTGCCTACGTGCCGG
GCAACAGCTTGTATCCCTCCGCCATCGGGGACTTCCTGGCAGCAGCGTTC
AACCCCTACGCCTTGGTGAACTACGCCTGTCCTGCGGCCGTCCAGATGCA
ACATTCCCTCATCCGCTGGGTGGCGCGCCTCTTCGGCTACCCAGAAACCT
GTGCGGGAAACCTGACGTCAGGGGGAACGGTGGGCAATCTCATTGCCATG
GCAACGGCAAGAGATGCGAAGAAACTACAAGCGAAAGATTATCACAGGTG
CGTTGTTTACCTGAGCGAACTGACCCATGACGGCATTGGGAAGGTTCTCC
ACACTATCGGGATGGGAGAGTCCGTTATCCGGAAAGTCCCCGTCACCGAG
CGGTTCGGGATGGACCCGGAGAAACTAGCCGACCTCATAGAGAAAGATGT
AGAGGAGGGATTGATTCCTTTCGCCATCGCTCATGACCTTCCAGATGCGG
CCTTGGACAGTTTCTGCACCTCGGTAGGAGACCACATGCTGATGCGAGAA
GGACATCCGGGGTACTTTGCCTACGTGCCGGGCAACAGCTTGTATCCCTC
CGCCATCGGGGACTTCCTGGCAGCAGCGTTCAACCCCTACGCCTTGGTGA
ACTACGCCTGTCCTGCGGCCGTCCAGATGCAACATTCCCTCATCCGCTGG
GTGGCGCGCCTCTTCGGCTACCCAGAAACCTGTGCGGGAAACCTGACGTC
AGGGGGAACGGTGGGCAATCTCATTGCCATGGCAACGGCAAGAGATGCGA
AGAAACTACAAGCGAAAGATTATCACAGGTGCGTTGTTTACCTGAGCGAA
CTGACCCATGACGGCATTGGGAAGGTTCTCCACACTATCGGGATGGGAGA
GTCCGTTATCCGGAAAGTCCCCGTCACCGAGCGGTTCGGGATGGACCCGG
AGAAACTAGCCGACCTCATAGAGAAAGATGTAGAGGAGGGATTGATTCCT
TTCGCCATCGCTCATGACCTTCCAGATGCGGCCTTGGACAGTTTCTGCAC
CTCGGTAGGAGACCACATGCTGATGCGAGAAGGACATCCGGGGTACTTTG
CCTACGTGCCGGGCAACAGCTTGTATCCCTCCGCCATCGGGGACTTCCTG
GCAGCAGCGTTCAACCCCTACGCCTTGGTGAACTACGCCTGTCCTGCGGC
CGTCCAGATGCAACATTCCCTCATCCGCTGGGTGGCGCGCCTCTTCGGCT
ACCCAGAAACCTGTGCGGGAAACCTGACGTCAGGGGGAACGGTGGGCAAT
CTCATTGCCATGGCAACGGCAAGAGATGCGAAGAAACTACAAGCGAAAGA
TTATCACAGGTGCGTTGTTTACCTGAGCGAACTGACCCATGACGGCATTG
GGAAGGTTCTCCACACTATCGGGATGGGAGAGTCCGTTATCCGGAAAGTC
CCCGTCACCGAGCGGTTCGGGATGGACCCGGAGAAACTAGCCGACCTCAT
AGAGAAAGATGTAGAGGAGGGATTGATTCCTTTCGCCATCGCTCATGACC
TTCCAGATGCGGCCTTGGACAGTTTCTGCACCTCGGTAGGAGACCACATG
CTGATGCGAGAAGGACATCCGGGGTACTTTGCCTACGTGCCGGGCAACAG
CTTGTATCCCTCCGCCATCGGGGACTTCCTGGCAGCAGCGTTCAACCCCT
ACGCCTTGGTGAACTACGCCTGTCCTGCGGCCGTCCAGATGCAACATTCC
CTCATCCGCTGGGTGGCGCGCCTCTTCGGCTACCCAGAAACCTGTGCGGG
AAACCTGACGTCAGGGGGAACGGTGGGCAATCTCATTGCCATGGCAACGG
CAAGAGATGCGAAGAAACTACAAGCGAAAGATTATCACAGGTGCGTTGTT
TACCTGAGCGAACTGACCCATGACGGCATTGGGAAGGTTCTCCACACTAT
CGGGATGGGAGAGTCCGTTATCCGGAAAGTCCCCGTCACCGAGCGGTTCG
GGATGGACCCGGAGAAACTAGCCGACCTCATAGAGAAAGATGTAGAGGAG
GGATTGATTCCTTTCGCCATCGCTCATGACCTTCCAGATGCGGCCTTGGA
CAGTTTCTGCACCTCGGTAGGAGACCACATGCTGATGCGAGAAGGACATC
CGGGGTACTTTGCCTACGTGCCGGGCAACAGCTTGTATCCCTCCGCCATC
GGGGACTTCCTGGCAGCAGCGTTCAACCCCTACGCCTTGGTGAACTACGC
CTGTCCTGCGGCCGTCCAGATGCAACATTCCCTCATCCGCTGGGTGGCGC
GCCTCTTCGGCTACCCAGAAACCTGTGCGGGAAACCTGACGTCAGGGGGA
ACGGTGGGCAATCTCATTGCCATGGCAACGGCAAGAGATGCGAAGAAACT
ACAAGCGAAAGATTATCACAGGTGCGTTGTTTACCTGAGCGAACTGACCC
ATGACGGCATTGGGAAGGTTCTCCACACTATCGGGATGGGAGAGTCCGTT
ATCCGGAAAGTCCCCGTCACCGAGCGGTTCGGGATGGACCCGGAGAAACT
AGCCGACCTCATAGAGAAAGATGTAGAGGAGGGATTGATTCCTTTCGCCA
TCGCT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000112 | genome | Sc0000112:454103..457650 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL07490_cuf10 |
| Biotype | protein_coding |
|
