BlTCONS00063565 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00063565
Unique NameBlTCONS00063565
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000051:1674058..1676337+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00063565 ID=BlTCONS00063565|Name=BlTCONS00063565|organism=Branchiostoma lanceolatum|type=mRNA|length=2280bp|location=Sequence derived from alignment at Sc0000051:1674058..1676337+ (Branchiostoma lanceolatum)
GTTTAACGAAGATTTTATCATTCAAGAGAGCAGAATCAAACTTCCAATAT
CCTAGTCCCTGTGAAATATCATACGTTGTAACATCTTTTTTGATTAAGCG
GTGGTCGGTCGCATGCATCGTGTCGTTTTTGTGTTTTTTTTTTAATCTCC
GAATATCCACTAGGTTATTTGTGTCAGAAATTTCCAGCATTGCCTGTATA
GCTTGTGGGTAATAGTCAATGTTACGTCGATGAATATTAGACGAATGCGT
TCTTTGTTGCTCATGAAAACTGGCTTTCGTATAATTCACCTGGACATGTG
GACATGATCCGGTCCGTCTTGCCATCTTGGTTGATAAATCTTTGTCCTTA
AATCATCTTAGAAGCACCCTGCCCGCCCGACAACAGTCTCGTACTACCTA
GTGGTAAGATGTACTCCGCCACTGAGGACTTGACGTTGTATTCTGGCGCG
TACGAACAATGCAGACGACAAGGCGGTATGGTGGCGATACCAAGGGACGA
GGAGGAACAACGGAACCTGGTGTTCCTAAAGAACTGCGTCAACAAGTAAG
GTGGTAACTATATATTCAAGAGATTTTAAAGAGTTAGAGGAACGCTAGCT
CATTAAATCACTAGTATGGGATTTATATTTTTTCTTACAAGTGAATTAAT
GAGTTAGATGGATGAGAGCCCATTAAATCACAAGTAAGGGATTTAAAGAT
TCTCTTACTAGTGATTTAATGAGTTAGAAGCATGCTAGCCCATTAAATCA
CAAGTAAGGGATTTATAGATTCTCTTACTAGTGATTTAATGAGTTAGAAG
CATGCTAGCTCATTGAATCACTAGTAAGGGATTTAAAAATCCCATTCCTT
GTGATTTAATGAGTTATAGTTAGAGGCATGCTAGCTTATCAAATCACTAG
CGATCTAATTGCTAATTAAATCACTAGTAAGGGAATCAAATATTTTCTTA
CTAGTGANTAGCGATCTAATTGATAATTAAATCACTAGTAAGGGAATCAA
ATATTTTCTTACTAGTGATCTAATGAGTCAGAGGAGTGTTAGCCCATTAA
ATCACTAGTAGACTGCTAACTCGTGCGTACTTCTGCATTCACCAATATAG
TGGCCATCCGTTCTGGCTTGGTATAAAGAAGATAGCAGGAGTATGGAGTG
ACGACAGCGGCACTGCACTGGGCAATTTCACGAGCTGGGCACCCGGGGAG
CCAGACGAAGACAAACCCTGTTCGTATATCGTCAAGGGTGATCATGAAGT
GGGGGAACGCCGAGACAACTGGGCAGACACATTCTGCCACTCAGGATTCA
GNACTGCCACTCAGGGTTCAGCTACATCTGTGAGATAGAAGGTGCCAGGA
CTCATTATATCATATTATATTACTTCTCCTTTTCTCAGAACCCTTTTCAG
AAATAATCATAAGCAAAAGATACTAGTACATTGAAAACACGAGAGAGGTT
CTCACTCATGATACAAATTAATCCCATTTTGCATGATTTGCATAACGACT
GACGTATTCGGTCTGACCACTGCAGTGCAGCCTGACCACACAGTGCCTCC
GTGCAGCGCAGCAGCCACTGCATCCCAGAGAGCTGATGACGGTAAGACCA
TGGGGCTGCCCAAATAGGATCATTATGTGTTGGAACAGATCTATTTCAAA
GATTTGGAAAGATCTATTTGTAGGAGTTTTCAACCGGTGATTAAAAGTTT
CCGGAACTAGATTAGTGTATTGATTTTTTTTTCTTTCGTAGAATGACGTT
CACATTAACATTTCGTGCATTTTCACAGGCTCCATGGCGCGTGTTGCTAC
CATTGCCGGCAGCGCTCTGGCGTCCATCGTTCTGGCTCACGTTGTTTTGG
CCTACCCCAACATGTTCGGTTAGGTCAGGCTAAACAGAAACATTCGGCAA
CTAGTACATTGTAGAGTTGCATTTGGACCAACGTGTACAGAGTATGACCT
CCGTTACAGACCCCACCGAACAGTTCATTTATCTAACTATATTAATGTAC
CGGATTCCGATCAACAAGTGGTTTCTGAATTCATGCTCCCGAAACTATCC
GCAAACTGCGCGTACAGAGTTGGAAAAAAGTGCGGCCGGGTCTGCAATTG
AAGCCAAACCGTGTGTTTAGTTATTAATGTTACGCAGTTTTTGCAATAGT
TCTAGTAGCTATTGTTACTATTTCCTTTGAAAGTAATTCATTGCACGAGT
CTACCTCCACTTTTATGCAAATGGCACACTTCGTTCAAACGTCGAAAAGG
ATCGCGGGTAACTGTTTTTCTTCTTTATCG

Coding sequence (CDS) from alignment at Sc0000051:1674058..1676337+

>BlTCONS00063565 ID=BlTCONS00063565|Name=BlTCONS00063565|organism=Branchiostoma lanceolatum|type=CDS|length=375bp|location=Sequence derived from alignment at Sc0000051:1674058..1676337+ (Branchiostoma lanceolatum)
ATGTACTCCGCCACTGAGGACTTGACGTTGTATTCTGGCGCGTACGAACA
ATGCAGACGACAAGGCGGTATGGTGGCGATACCAAGGGACGAGGAGGAAC
AACGGAACCTGGTGTTCCTAAAGAACTGCGTCAACAATGGCCATCCGTTC
TGGCTTGGTATAAAGAAGATAGCAGGAGTATGGAGTGACGACAGCGGCAC
TGCACTGGGCAATTTCACGAGCTGGGCACCCGGGGAGCCAGACGAAGACA
AACCCTGTTCGTATATCGTCAAGGGTGATCATGAAGTGGGGGAACGCCGA
GACAACTGGGCAGACACATTCTGCCACTCAGGATTCAGNACTGCCACTCA
GGGTTCAGCTACATCTGTGAGATAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00063565BlTCONS00063565-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00063565-exon-Sc0000051-1564993656:1674058..1674602BlTCONS00063565-exon-Sc0000051-1564993656:1674058..1674602Branchiostoma lanceolatumexon
BlTCONS00063565-exon-Sc0000051-1564993656:1675158..1675398BlTCONS00063565-exon-Sc0000051-1564993656:1675158..1675398Branchiostoma lanceolatumexon
BlTCONS00063565-exon-Sc0000051-1564993656:1675583..1675648BlTCONS00063565-exon-Sc0000051-1564993656:1675583..1675648Branchiostoma lanceolatumexon
BlTCONS00063565-exon-Sc0000051-1564993656:1675836..1676337BlTCONS00063565-exon-Sc0000051-1564993656:1675836..1676337Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000051genomeSc0000051:1674058..1676337 +
Properties
Property NameValue
GeneIDBlCUFF031114