BlTCONS00063548 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00063548
Unique NameBlTCONS00063548
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000051:1486419..1490327+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00063548 ID=BlTCONS00063548|Name=BlTCONS00063548|organism=Branchiostoma lanceolatum|type=mRNA|length=3909bp|location=Sequence derived from alignment at Sc0000051:1486419..1490327+ (Branchiostoma lanceolatum)
TGGCTCTGTGCCTTGCGAGACTGGTCACGCGTACGTGACATTTCCAACCA
ATAACTTTCGCCAACTAAAGTCCTCTCGTTATAAACGGCGCATTTATACG
CATTACGAAATATTCCAGTTCTGACTGTGGAAGAGTGGAAGTGCTTTCGG
GCGACAGAAAGTGACGTTATAGATTTGTCCGTTCGTTAGTGATCTGTTCT
CGCTACAAGCTCATAGCAATGAGCTCAGAGAAGGTTATGTACGAAGGCAA
TGTCTCCGCCCGGGCCCGCCGAGACCGACCCGGCGCGGCCCGACCAGTGA
CGGTGGCCGTGGCGGCCGGGGCGGGGGTGCTGGTCGTGGCGGCCCTCGTC
TTTCTCGCTCACGAGATCAAACATGTGCGAGAGAAAGCAGGTCAAATGCA
AGATCAACTTGCCAAGGCTAATGACAAGATCTTGGCGCTGAAGGATCGCA
CCTTGGCTATGGAGATCAAGCAAGAAGCCGTTGCTAGAGACAACGAGGAA
GTGTCGTCTTACAAGGAGGAAATGACGACCCTGAAAATCCAACTGTCGTC
CCTGCAGATGGAGTTACAGAAGGAGAAAGCTGACGGGGCGTCTCTGAGGG
AGCGACTGGCTGTGCTGGAAACCAAGTTCCAACTCGGTGTCGAAAATGAA
CAGGAACCAACCTCCGGAACAACTCGCGAGGTAAGGGGATGATGCGTGTT
CTCTTGCTTTGAAAGCACGCCCAGCCCCTCCTGTTCGGACAAGAACATGT
TATATTCTGTCTGTTTGTTTGTCTGTTTGTTTGCTTGTTTGTTTGTTTGT
TTGCTTTGACCATGTAGGGGTGTTAAATACAGAAGATTTAAGCTACAATC
CCATACCTTAAATATGTGAGCCCCCCATCAGCTAGTAGAATGTTCCATGA
CCTCCCTCTCACGAACTGGGACTGTTCTGAAGAAAAGAATTCAAAATCTA
AACACTTATTATGGTCGTATCAAATCACAGGGTGGTGGGTTTTGGTTTTG
TGATTTGCAGAACCGAGAACTTCGGATAATGAGTTCAAATCTGTACATTT
AACAGCAGGAGGCTGACTCCGATGTGAATCCACGACAAGTTGGTGATGAC
GTCAGGCTTGGAGACCACAACGCCCCCTTGCGGCGGTCTAAGAGATGGGT
CACAGCACCCTACGGCATAGGTTGGCAGACATTCATTTTATCCACTTATC
TTTGAATGCGCCTGTAATAACGATACGTCGGTAGACTATAACTTCACTCA
TTTCTTTTAGAAATAATGATCCCTGTATTTTTACGAAGAAGTTCATTTTT
ACAACTAGTTAACTGCAATGGTGCTAGGGTGAGTCGAAATCTGAACAAAA
TTGTTCCTATTGTTACTCGTCGGACACTAACTGCCACTATCTAGTGAAGT
TTGTCCTCCCTGCATGGGGTGTTTGTATTTTGTAACGCTCTTTACACTAT
GGGATGCCACTGCCATACCACCATGTCACTGCAACTGTCGCAGGTCCCAT
TCGGGGTCCTGAAGGCCCGGCCGGACGAGACGGGCGGGACGGCCGTGATG
GTGTTCCCGGACCCCCCGGGCCTCCCGGTCCTCCTGGTGGATGTGAATGT
GGAGGGGGTGGGGAGTCATCCTGCCCACAGGTAGGATATTCGTGTGATTA
CAGATGCATTTTCTGTATTTATATCATTTGATAACGTGGTCTACTGTTGT
ACTAACTATTAAACTTGAGCTCGAGGCGAATTTTTTAAGGGAGGTCGATA
ATTTACATCGAGCTACTTTGAACGACTTCATATTGTACCGTTGACAATGG
GCGATAAGACGTTTACCATCAAAAACCATGTCACATCCTGTAGCGGCCGT
GCACTGCAGTACCGCTAGGCATGGAGAGCGGAGTTATTCCAGATAGCCAC
ATCACTGCATCCACTGCTGATCCAGATTGTGGCACCAGCGAAGCTCGCCT
TCATTCCCAGGAGAAAAGTCGCACAGGCCCTGGCCAGGGCGGATGGTCAG
GAGCCTGGTGTGCCAACACCCCACTGAACACCAACCAGTGGCTACAGGTG
AGGGGACACTACAGGCTGGAGCTTGCTTTATTACTTTATGATCCGATGTA
ATTTTGTTCTGTGTAGTGTAGTGTAGTGAAGTGAAGTGTAATTCATATAT
CAGTATTAAAATTATCTGTTATTTCATTACCGGGTATTAATTCGTTTTTC
TTCCTGTGTCAGGCACATGTTTTGACCTAGCTTCTGTAGTTTGATTTTCA
GTCACCACGTTGCTTGATTGTTGACATAGTTATCTATTTTCGCAGTTTCT
GGTTGTATTTGTTCTCTTTGTTTTTGAAAAGAGAATATAAGATTTAAGAA
GATACAACGTCAGTATCGACATACTTGAATAAATACTTCTTCGACCAATA
ACATTTAAGACAAGATTGACGGCATGTTAAATGCCACGTATGATGTGTGG
CTGAGTTAAGCCAAGATGACGTGTTTTTCTCCCGCTCAGGTTGACATGGG
AGCAGGGACTACAGTAGCTGGAGTCATCACCCAGGGCAGGTCCAGTAACA
CTTATCGACAGTGGGTGGAATCCTACAAACTACGCTTCAGCACAGACGGG
ACCACGTGGTCCACATACCTGGACAAGCTGGGACAGGAGAAGGTTGGTCA
TCCTTGTTTGCTGCACAAGTCCAATACATTAGCTTAAAAAATTAACGTAC
TTGTGGATATGAATGTATGTTGTCGTATGACGAATGTAACTGTTCTACTT
AACGTTAGAAATCATTTGTAGGGCGTTATGTGTTCCTCCAAATTTGATGT
CATTTTCATATCTTTTTCCGTGTGGCGTTGCTGGTGGCCTGTTTATCTAC
TTCTTCACATTACCCTCCAAGGTCTTCTCTGGTAATTCTGATCAGGACAC
CGAAGTGCGCCACCTGTTGGACCCGCCGGTAACTGCACGTTACGTCCGGT
TCTGGCCGCAGACATGGAATAATCACATCAGCATGCGTGTGGAGGTCTTG
GGACAGTAAGTGAACATCTGTAGTCTTCTGTCCTAATTTTGTGTAAGTTT
GCATCATGGCCAGGTGATTGTAAAATAAGTGATGTAATGTCCCTGTAAAG
GCATTTCAAAGATTTTTTTCCGACGACATTGTACAACGACAAAGTATTTT
TTGGTTTAAGTGCTCATTTACATAATCTTACACTGATAATGCAAGTCAGG
CGCTAGTTTGCATATAGTAAGGAAAGTTTGTAAATCCACTGCTTTCCATT
ATGGGACTCTCAAACACGATATAAATAATGTGGAAGAGACGAATATCGAT
AGATCTCAATGAATACTATATTTGCATGAATAATTACAAATGCTATAATT
TCATGGTTAATGTTGGGGATTTTATTCTTGCAGAATATAGAAGTTAAGTT
TACAAGAACACTAACAAAGACCGCCATCGCCTTGGCAACGTCTTTTTTTA
TTGTCAATCTTGTTTTTCTTGTTTCTTCACCTCTCTAGGGACTGCACCAG
TGGCTAGACTCAACATGAAGAATTGGAGCTGTCCAAAGCTCAGATTTGCA
CATTGCAGGAAATCTGCACTACAGTTTTTTAAGTCAAACACCAATTTTCT
CATTTTACTTGTGATAGTTTACAATATTAACGACTAATACTGATATATTT
CCCTCTCGTTATTTTTTGTCCTCAACTTTGATACTTAATTATAACTAATC
ATCCCTATCCTCACTCCTTTAGTCTTTTTACAGCAAATCCTAATCTTGCT
AAGTATCATCATACACTGAAATCCTCTTAGATTCTCGTATTTTAATCAGA
GGTTTTTACGTCAAAAAATGTTGACTAGTGCATGTTCACAAGATGATACA
ATCGGTACTTCATTTGTACAGAACTTGAATCCATGCTAATAAAGCGCACT
GCCCCATAT

Coding sequence (CDS) from alignment at Sc0000051:1486419..1490327+

>BlTCONS00063548 ID=BlTCONS00063548|Name=BlTCONS00063548|organism=Branchiostoma lanceolatum|type=CDS|length=1221bp|location=Sequence derived from alignment at Sc0000051:1486419..1490327+ (Branchiostoma lanceolatum)
ATGAGCTCAGAGAAGGTTATGTACGAAGGCAATGTCTCCGCCCGGGCCCG
CCGAGACCGACCCGGCGCGGCCCGACCAGTGACGGTGGCCGTGGCGGCCG
GGGCGGGGGTGCTGGTCGTGGCGGCCCTCGTCTTTCTCGCTCACGAGATC
AAACATGTGCGAGAGAAAGCAGGTCAAATGCAAGATCAACTTGCCAAGGC
TAATGACAAGATCTTGGCGCTGAAGGATCGCACCTTGGCTATGGAGATCA
AGCAAGAAGCCGTTGCTAGAGACAACGAGGAAGTGTCGTCTTACAAGGAG
GAAATGACGACCCTGAAAATCCAACTGTCGTCCCTGCAGATGGAGTTACA
GAAGGAGAAAGCTGACGGGGCGTCTCTGAGGGAGCGACTGGCTGTGCTGG
AAACCAAGTTCCAACTCGGTGTCGAAAATGAACAGGAACCAACCTCCGGA
ACAACTCGCGAGGAGGCTGACTCCGATGTGAATCCACGACAAGTTGGTGA
TGACGTCAGGCTTGGAGACCACAACGCCCCCTTGCGGCGGTCTAAGAGAT
GGGTCACAGCACCCTACGGCATAGGTCCCATTCGGGGTCCTGAAGGCCCG
GCCGGACGAGACGGGCGGGACGGCCGTGATGGTGTTCCCGGACCCCCCGG
GCCTCCCGGTCCTCCTGGTGGATGTGAATGTGGAGGGGGTGGGGAGTCAT
CCTGCCCACAGCGGCCGTGCACTGCAGTACCGCTAGGCATGGAGAGCGGA
GTTATTCCAGATAGCCACATCACTGCATCCACTGCTGATCCAGATTGTGG
CACCAGCGAAGCTCGCCTTCATTCCCAGGAGAAAAGTCGCACAGGCCCTG
GCCAGGGCGGATGGTCAGGAGCCTGGTGTGCCAACACCCCACTGAACACC
AACCAGTGGCTACAGGTTGACATGGGAGCAGGGACTACAGTAGCTGGAGT
CATCACCCAGGGCAGGTCCAGTAACACTTATCGACAGTGGGTGGAATCCT
ACAAACTACGCTTCAGCACAGACGGGACCACGTGGTCCACATACCTGGAC
AAGCTGGGACAGGAGAAGGTCTTCTCTGGTAATTCTGATCAGGACACCGA
AGTGCGCCACCTGTTGGACCCGCCGGTAACTGCACGTTACGTCCGGTTCT
GGCCGCAGACATGGAATAATCACATCAGCATGCGTGTGGAGGTCTTGGGA
CAGGACTGCACCAGTGGCTAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00063548-exon-Sc0000051-1564993656:1486419..1487098BlTCONS00063548-exon-Sc0000051-1564993656:1486419..1487098Branchiostoma lanceolatumexon
BlTCONS00063548-exon-Sc0000051-1564993656:1487477..1487588BlTCONS00063548-exon-Sc0000051-1564993656:1487477..1487588Branchiostoma lanceolatumexon
BlTCONS00063548-exon-Sc0000051-1564993656:1487912..1488048BlTCONS00063548-exon-Sc0000051-1564993656:1487912..1488048Branchiostoma lanceolatumexon
BlTCONS00063548-exon-Sc0000051-1564993656:1488262..1488465BlTCONS00063548-exon-Sc0000051-1564993656:1488262..1488465Branchiostoma lanceolatumexon
BlTCONS00063548-exon-Sc0000051-1564993656:1488908..1489060BlTCONS00063548-exon-Sc0000051-1564993656:1488908..1489060Branchiostoma lanceolatumexon
BlTCONS00063548-exon-Sc0000051-1564993656:1489290..1489423BlTCONS00063548-exon-Sc0000051-1564993656:1489290..1489423Branchiostoma lanceolatumexon
BlTCONS00063548-exon-Sc0000051-1564993656:1489907..1490327BlTCONS00063548-exon-Sc0000051-1564993656:1489907..1490327Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00063548BlTCONS00063548-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000051genomeSc0000051:1486419..1490327 +
Properties
Property NameValue
GeneIDBlCUFF031103