BlTCONS00063053 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00063053
Unique NameBlTCONS00063053
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000050:338436..350548-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00063053 ID=BlTCONS00063053|Name=BlTCONS00063053|organism=Branchiostoma lanceolatum|type=mRNA|length=12113bp|location=Sequence derived from alignment at Sc0000050:338436..350548- (Branchiostoma lanceolatum)
AGGTTATCCCCTCCACGCATGTGCGAAGAGGCCTCTTCAAACTTTCCGGA
TCGCCAACTTGGCTTGTTGTCGCCTTTTCTCCCTCCTTCTCCCGATTGCG
ACGCACGTCTCAGCTCTACAAGATGCAGACGAACGAATGGGCTGCAAAAC
TTCGGCGGTTCGACGCCTACCCCAAAACTCTGGACGATTTCCGTGTGAAA
ACGTTTGGCGGAGCAGCCGGTGAGTATGGGAGGTGCCCCCCTCCCCACAG
CTTCTGGCACCTGTTTCATAGAAATGAAACTCTATAGTTTCTGCCATCGC
CAAACCTCCCTCACTTTCTTTGCATAAAGGGAATAATGTGTTAGTTGGAT
AACAGATTTGTATGACCTTGGTTGTGTCTTGAATCATGTTGTATTTATTT
ACTGTACTAAGCTTAGACATGTTAGATAATATAAAATCGATACACGGGCC
TCTCCATACGGAACTAGATCTACACATCAACAATACATTATTACATGATA
TATGTAACGTTATGTGCAAATGGTAACGTTGATACGTGAGTGTATCTTTG
GGTGATCAGAAAGAAGAAAAAACCTTTTATGTGTCTAATTGAGACTTATT
ATGGTATCACTTCCTCATACATAAATGTCAATTTTGAACCAAGTACACCA
GAATAAAAGTCTGTTGTTTATAAAATGGAGAACTAAGGTGTGAATCAAGT
CCATCATAATTCATTATCTACTGTCAATTTTTGAAGCTACCCTTTTTTCA
TATTTTGTGCATTGACTAAGATTTTTTTACAGCAAGAAAGGAATGCAAAG
CTTCAGAATTGTATTGTTTATTTTTTCTCCAAACAATGCAATGGAGCAGG
TTAGCAATTAGACAATATTGTCCTAATCTCCCATTTTGTTTGTTTCCCTA
GTAACCATAATCAGTGGTTTCTTCATGATCCTCCTGTTTGTATCGGAGCT
GCAGTACTACCTGACTCTTGAGGTTTGTGTGGGAATATAATTATCGATAT
ATCATTAGATGTTGATAAATGATTATCAGGATAAAACAGATTTTGATAAC
AAATACGTTATGCTGTCTTAGCTAGCTAGTGGAAATAGAGCTGGTCGAAT
GTTTAAGTCTATGATCCGAAATCCCTACTTACCTTTGTGATGAATGGCTA
CTAGTAGTGACTCTGACTGTATGTAATAGGGCCATCTTCCTGTTGTTTTT
CTTGTTTTGTTCAATCCCACTGCTACTATGCATGTAACATGTGTTATGTC
ATATTGTTGTGTTTGATTATGATGATGACATTGTCTTTGCTAACTACCTG
TAACTGTTGAACATTCCCCACAGGTAACAGAGGNGTTTGTTTCCCTAGTA
ACCATAATCAGTGGTTTCTTCATGATCCTCCTGTTTGTATCGGAGCTGCA
GTACTACCTGACTCTTGAGGTTTGTGTGGGAATATAATTATCGATATATC
ATTAGATGTTGATAAATGATTATCAGGATAAAACAGATTTTGATAACAAA
TACGTTATGCTGTCTTAGCTAGCTAGTGGAAATAGAGCTGGTCGAATGTT
TAAGTCTATGATCCGAAATCCCTACTTACCTTTGTGATGAATGGCTACTA
GTAGTGACTCTGACTGTATGTAATAGGGCCATCTTCCTGTTGTTTTTCTT
GTTTTGTTCAATCCCACTGCTACTATGCATGTAACATGTGTTATGTCATA
TTGTTGTGTTTGATTATGATGATGACATTGTCTTTGCTAACTACCTGTAA
CTGTTGAACATTCCCCACAGGTAACAGAGGAGCTGTTTGTGGACACCTCA
CGAGGGGAGAAGATGAGAATCAACATCGACATTCTGTTTCCTAAAGTACC
TTGTGCATGTGAGTAACTGGTTTTACCCAAAAATTTGTATATGTATAAGG
TCACATGAATTATTAGAAGACCATATTGTATCTTTATTAATTCCAAATAA
GGTCACCATCTGTCATCATATTCATCATACAAATGGCTTTGTGACAGCAG
CCCAAGTTCATACTTGGGAGAGTCAAGGATGTATCGTACAAAATCCTGCT
GTCGTGTGACAGAAAGTGTTATCGCAGACACCTGTCAACAGTTCCATGCC
ATAGCCTCACTGAAAATACTACAAGAAAAAATTGAACAACAGAGATATAA
CTGTGTCAAAATACAGCACTATCTGACTCAAAACCAGCCTCCTTTGCCAA
GGAAGGGTCGCCTCTCTCTGTAACATAACTTCCTAAGCCTGTATTAGAGA
ACCTTGGCCCGTGTAAAAAATCGGATATCAGCGCTCCCCCCAAATTTAAA
GAAGGAACACCACTGATCCTAGAAGTCTGCAAAGGAGGCTCTCTAAAACA
TTGTCTGTTCCCAACTTCCCATGATTATGGTAGCAAGTAGTGAATTTCTG
CCCCCCCCCCTTCCCCTCCAGACCTGAGTATAGATGCTATGGACATCGCA
GGAGAGCAGCAGATAGATGTGGATCACAATCTGTTCAAGAGGAGGATGGA
TCTACAGGGGAACGTCCTGGATGAACCTGAAAAAGAAGGTCAGGAGATTA
CTGTTACAGTATCATTTTTCCCCATTAGTTTATTGTATAACATTTATAAC
AGGTATATAATTGTGCCAATTAGAAATATAGACATGGTAGACTTTGCTAT
ACCAATAGTTCTTTTGTTAGGAAGTGATATTGAAAACGTGAACAAACAAG
AACTACAAGTATGGACATTTTAATGAATCCAGGGAGATGATATATATGCT
AATTCTGCTGTTTTCCGTTTCAGACTTAGGAGACCCATCAGACGAGTTTC
TTCAGGTAAGAACAATAAAGTTAGAACTTAAATATCCCTTCCTTTATTGA
ACGCAGAGCATTGTTACAATCAAAGAAATTTAGGGACAGTCATCCTAAGG
GAGCTTCAGGTGTTAGCCTGGAGTGGAAAACCTCTGCAGGTAAAATACCC
AACACACTTATAGAGAAGAGTAAGAGTGACCCAGTGTGCTTGGCTGAAAA
TGCAGTAGCTGTAGTGAGGCCACATTGCACTTCTAGCTATTGAAAAAGAA
TCAGGCTTCGTCTTTAGACTGAGGTTGGCTGCTTTACCTTTACCATCGTG
AGATACTAGTAGTGAATTGTAGGGTGGGGGTTATAACAATAATATTGTTT
TGCTTTTTACAGGCAATAAAAAATCTGGAGAACAAGACAGCGAATGTTTG
TGAAAGCTGCTATGGAGCTGAAACTGAGGACCTGAAGTAAACTCTATATT
CTTTTTATGTCTTATCACCTGTTAAGTTTATAATCTTGACATTCTTGAGG
AAGCCTTCTCTGCATGTAGAACACACCTTTGTTGATATTCCACACTTTTT
TATGAAGTGTTACAGTATAGTCATGCACTTTTAACATTGTGATTAAGGGC
ATGATCTAGGATAATAAAGGATTATCTGAGGAAGCTTAAGTTTTGTATTG
TTTTTTTAGGGGCAAGAAATAAGTTTTTCACTTTTTAGGATCAGTTTCAG
GTTTAGGCGGGCAGAAGACATAACAAGCCCTTTTGGAGTGATTACCATGA
AAACCACAAACATTAAACCACCGCGATTACATTTACAGTATATTGATTGC
TTGCAAATGTCAGCCCCTTCATATATGCTGTAATCTCTCTAGATGCTGTA
ACACCTGTGAGGATGTGCGAGAAGCCTACAGGAGAAAAGGCTGGGCCTTC
AACAACCCCGACAGCATCGAGCAGTGCAAGAGGGAGGGCTGGTCAGAAAA
ACTCAAGCAGCAGAAAAACGAAGGCTGCCAAGTGTATGGCTACCTGGAAG
TAAATAAGGTATGTGGATGTATGTTTAACCTTCAGCCTGCTAAAGTAACC
TTTTGGCAACAATTTGTAATGGTTATGGGGTTGGGTAGCAGTGAGAAGGA
CTGAAACAGATACCGGTATGCAAAAGATACTGCAGTTTTGAGTGAATATC
ATTTGCTGTGCTAACCTTTGGGCACCAAGGAGAAAGGCAAGAAAGGAAGG
AAAAATAACAACCAACCTTTTAAATCTCATTATCAGTACATCATGTATTT
GTTTTGAAACTACAACATCCAAAATGCAATGCTTACATCTTCTATGCTGC
AGTTAAATGAAATATGTGTTTTGTAGGAACTTGAATCTTAGGTGGTATAT
GTACCTTCTTGTGTGTTAGAGTATTCCATAACTTTGCTTCTTCCGTATTC
TTTTCATGCAGGTGGCAGGAAACTTCCATTTTGCTCCAGGGAAAAGTTTT
CAACAGCATCATGTACACGGTTAGTACCACTGGGTTGAGAGGGGGGTATG
AGTTGACGTGTTACCTTAAAGTCATGCCAGATACATAATAATAATCAGTA
TTGTATCAACACTGTATTTTGAATGATGGTAAGAGAGACATTCTTTAGGC
CAGCTTACTTAGTAATTTACCACATATTAAAGGAAAATCATGCCTATTGT
GGTAACCTCATGAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNGAAATCCCTACTTACCTTTGTGATGAATGGCTACTAGTAGTGACT
CTGACTGTATGTAATAGGGCCATCTTCCTGTTGTTTTTCTTGTTTTGTTC
AATCCCACTGCTACTATGCATGTAACATGTGTTATGTCATATTGTTGTGT
TTGATTATGATGATGACATTGTCTTTGCTAACTACCTGTAACTGTTGAAC
ATTCCCCACAGGTAACAGAGGAGCTGTTTGTGGACACCTCACGAGGGGAG
AAGATGAGAATCAACATCGACATTCTGTTTCCTAAAGTACCTTGTGCATG
TGAGTAACTGGTTTTACCCAAAAATTTGTATATGTATAAGGTCACATGAA
TTATTAGAAGACCATATTGTATCTTTATTAATTCCAAATAAGGTCACCAT
CTGTCATCATATTCATCATACAAATGGCTTTGTGACAGCAGCCCAAGTTC
ATACTTGGGAGAGTCAAGGATGTATCGTACAAAATCCTGCTGTCGTGTGA
CAGAAAGTGTTATCGCAGACACCTGTCAACAGTTCCATGCCATAGCCTCA
CTGAAAATACTACAAGAAAAAATTGAACAACAGAGATATAACTGTGTCAA
AATACAGCACTATCTGACTCAAAACCAGCCTCCTTTGCCAAGGAAGGGTC
GCCTCTCTCTGTAACATAACTTCCTAAGCCTGTATTAGAGAACCTTGGCC
CGTGTAAAAAATCGGATATCAGCGCTCCCCCCAAATTTAAAGAAGGAACA
CCACTGATCCTAGAAGTCTGCAAAGGAGGCTCTCTAAAACATTGTCTGTT
CCCAACTTCCCATGATTATGGTAGCAAGTAGTGAATTTCTGCCCCCCCCC
CTTCCCCTCCAGACCTGAGTATAGATGCTATGGACATCGCAGGAGAGCAG
CAGATAGATGTGGATCACAATCTGTTCAAGAGGAGGATGGATCTACAGGG
GAACGTCCTGGATGAACCTGAAAAAGAAGGTCAGGAGATTACTGTTACAG
TATCATTTTTCCCCATTAGTTTATTGTACAACATTTATAACAGGTATATA
ATTGTGCCAATTAGAAATATAGACATGGTAGACTTTGCTATACCAATAGT
TCTTTTGTTAGGAAGTGATATTGAAAACGTGAACAAACAAGAACTACAAG
TATGGACATTTTAATGAATCCAGGGAGATGATATATATGCTAATTCTGCT
GTTTTCCGTTTCAGACTTAGGAGACCCATCAGACGAGTTTCTTCAGGTAA
GAACAATAAAGTTAGAACTTAAATATCCCTTCCTTTATTGAACGCAGAGC
ATTGTTACAATCAAAGAAATTTAGGGACAGTCATCCTAAGGGAGCTTCAG
GTGTTAGCCTGGAGTGGAAAACCTCTGCAGGTAAAATACCCAACACACTT
ATAGAGAAGAGTAAGAGTGACCCAGTGTGCTTGGCTGAAAATGCAGTAGC
TGTAGTGAGGCCACATTGCACTTCTAGCTATTGAAAAAGAATCAGGCTTC
GTCTTTAGACTGAGGTTGGCTGCTTTACCTTTACCATCGTGAGATACTAG
TAGTGAATTGTAGGGTGGGGGTTATAACAATAATTTTGTTTTGCTTTTTA
CAGGCAATAAAAAATCTGGAGAACAAGACAGCGAATGTTTGTGAAAGCTG
CTATGGAGCTGAAACTGAGGACCTGAAGTAAACTCTATATTCTTTTTATG
TCTTATCACCTGTTAAGTTTATAATCTTGACATTCTTGAGGAAGCCTTCT
CTGCATGTAGAGCACACCTTTGTTGATATTCCACACTTTTTTATGAAGTG
TTACAGTATAGTCATGCACTTTTAACATTGTGATTAAGGGCATGATCTAG
GATAATAAAGGATTATCTGAGGAAGCTTAAGTTTTGTATTGTTTTTTTAG
GGGCAAGAAATAAGTTTTTCACTTTTTAGGATCAGTTTCAGGTTTAGGCG
GGCAGAAGACATAACAAGCCCTTTTGGAGTGATTACCATGAAAACCACAA
ACATTAAACCACCGCGATTACATTTACAGTATATTGATTGCTTGCAAATG
TCAGCCCCTTCATATATGCTGTAATCTCTCTAGATGCTGTAACACCTGTG
AGGATGTGCGAGAAGCCTACAGGAGAAAAGGCTGGGCCTTCAACAACCCC
GACAGCATCGAGCAGTGCAAGAGGGAGGGCTGGTCAGAAAAACTCAAGCA
GCAGAAAAACGAAGGCTGCCAAGTGTATGGCTACCTGGAAGTAAATAAGG
TATGTGGATGTATGTTTAACCTTCAGCCTGCTAAAGTAACCTTTTGGCAA
CAATTTGTAATGGTTATGGGGTTGGGTAGCAGTGAGAAGGACTGAAACAG
ATACCGGTATGCAAAAGATACTGCAGTTTTGAGTGAATATCATTTGCTGT
GCTAACCTTTGGGCACCAAGGAGAAAGGCAAGAAAGGAAGGAAAAATTAC
AACCAACCTTTTAAATCTCATTATCAGTACATCATGTATTTGTTTTGAAA
CTACAACATCCAAAATGCAATGCTTACATCTTCTATGCTGCAGTTAAATG
AAATATGTGTTTTGTAGGAACTTGAATCTTAGGTGGTATATGTACCTTCT
TGTGTGTTAGAGTATTCCATAACTTTGCTTCTTCCGTATTCTTTTCATGC
AGGTGGCAGGAAACTTCCATTTTGCTCCAGGGAAAAGTTTTCAACAGCAT
CATGTACACGGTTAGTACCACTGGGTTGAGAGGGGGGTATGAGTTGACGT
GTTACCTTAAAGTCATGCCAGATACATAATAATAATCAGTATTGTATCAA
CACTGTATTTTGAATGATGGTAAGAGAGACATTCTTTAGGCCAGCTTACT
TAGTAATTTACCACATATTAAAGGAAAATCATGCCTATTGTGGTAACCTC
ATGAAGATAAAAGCAATATTTGTTGTTAACTGCCCTGATATACAAATGTA
AGTACTGCATCATGCTATCTTGCACCAATGATTTACTGTCTGTTTCTACC
ATCCCACAGTTCATGATCTACAACCATTTGGTGGAGAAAAGGTGGGTACT
TTTAAGTTCACATATACATTACCTGGTACAAAACAATTTGCACTGTGAAT
CATGACCAGTGTGCTGTCTTTTAATTCACACAGTGAGACTAAAGCAATAA
AGGCTTTGACAAACTTGTACCAACTTTACAACCTACATCCTTGTGGTACT
TGTTATATGAAAATACTTGTGTTACACTTCCAGTTTAACCTGAGCCACCA
TGTGAACCACCTCAGTTTTGGTACAGACATTCCCGGAAGGGTCAATCCAC
TAGATGGGCACTTGGTCGCAGCTAAACAAGGTGAGCTGAACAGATTTTTG
TTTCATCATCATGTTTTGATGGTTTCACGAATGTCCATATCCCTCCTCCT
TCATCCCTACCTTTCCTCCATAGCTCTAGGCAAGTCTTCAAAGGTGCAGC
ACACATCCTCACACAGTTTGTATCTTCTGTGTTCTTCATAGTTCAGACTA
ATTCATATCCATGTACTTTTCCTGTGTTGGATTGGGTGTCTTGGGTTTTT
CCATAAAGTACTATATTACAACTCTGTATATCAGCCTTTGCATTTTATGT
AGCACTGGGTCTTGCATTGTCAACTGGGGGGATTGCTATCCAAGCTCTTT
GATACCCAGTGCCCCTATTTTAAACTAAAATATCAGGAGGTAAGTATTTT
GCTTTGTGTACAAATGTGTTTCAAACCTTTACCAAGTACACATGTAAGAA
AGGTGTCTAGCCTTTCGGTCAACCTGACAGAGCATCCAAATGAAAAAGTT
GTCTTCTTACACAAATACACCGACACAGCCTGAGCAATAAAACATCAATT
TATTTAGCTTGAATCTTCAAAAGAACCCAGACTACATCTGCCTTATAGTT
ATCTGAAACTAGC

Coding sequence (CDS) from alignment at Sc0000050:338436..350548-

>BlTCONS00063053 ID=BlTCONS00063053|Name=BlTCONS00063053|organism=Branchiostoma lanceolatum|type=CDS|length=1113bp|location=Sequence derived from alignment at Sc0000050:338436..350548- (Branchiostoma lanceolatum)
GTTATCCCCTCCACGCATGTGCGAAGAGGCCTCTTCAAACTTTCCGGATC
GCCAACTTGGCTTGTTGTCGCCTTTTCTCCCTCCTTCTCCCGATTGCGAC
GCACGTCTCAGCTCTACAAGATGCAGACGAACGAATGGGCTGCAAAACTT
CGGCGGTTCGACGCCTACCCCAAAACTCTGGACGATTTCCGTGTGAAAAC
GTTTGGCGGAGCAGCCGTAACCATAATCAGTGGTTTCTTCATGATCCTCC
TGTTTGTATCGGAGCTGCAGTACTACCTGACTCTTGAGGTAACAGAGGAG
CTGTTTGTGGACACCTCACGAGGGGAGAAGATGAGAATCAACATCGACAT
TCTGTTTCCTAAAGTACCTTGTGCATACCTGAGTATAGATGCTATGGACA
TCGCAGGAGAGCAGCAGATAGATGTGGATCACAATCTGTTCAAGAGGAGG
ATGGATCTACAGGGGAACGTCCTGGATGAACCTGAAAAAGAAGACTTAGG
AGACCCATCAGACGAGTTTCTTCAGGCAATAAAAAATCTGGAGAACAAGA
CAGCGAATGTTTGTGAAAGCTGCTATGGAGCTGAAACTGAGGACCTGAAA
TGCTGTAACACCTGTGAGGATGTGCGAGAAGCCTACAGGAGAAAAGGCTG
GGCCTTCAACAACCCCGACAGCATCGAGCAGTGCAAGAGGGAGGGCTGGT
CAGAAAAACTCAAGCAGCAGAAAAACGAAGGCTGCCAAGTGTATGGCTAC
CTGGAAGTAAATAAGGTGGCAGGAAACTTCCATTTTGCTCCAGGGAAAAG
TTTTCAACAGCATCATGTACACGTTCATGATCTACAACCATTTGGTGGAG
AAAAGTTTAACCTGAGCCACCATGTGAACCACCTCAGTTTTGGTACAGAC
ATTCCCGGAAGGGTCAATCCACTAGATGGGCACTTGGTCGCAGCTAAACA
AGGTGAGCTGAACAGATTTTTGTTTCATCATCATGTTTTGATGGTTTCAC
GAATGTCCATATCCCTCCTCCTTCATCCCTACCTTTCCTCCATAGCTCTA
GGCAAGTCTTCAAAGGTGCAGCACACATCCTCACACAGTTTGTATCTTCT
GTGTTCTTCATAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00063053BlTCONS00063053-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00063053-exon-Sc0000050-1564993656:350330..350548BlTCONS00063053-exon-Sc0000050-1564993656:350330..350548Branchiostoma lanceolatumexon
BlTCONS00063053-exon-Sc0000050-1564993656:349130..349200BlTCONS00063053-exon-Sc0000050-1564993656:349130..349200Branchiostoma lanceolatumexon
BlTCONS00063053-exon-Sc0000050-1564993656:348691..348778BlTCONS00063053-exon-Sc0000050-1564993656:348691..348778Branchiostoma lanceolatumexon
BlTCONS00063053-exon-Sc0000050-1564993656:341370..341486BlTCONS00063053-exon-Sc0000050-1564993656:341370..341486Branchiostoma lanceolatumexon
BlTCONS00063053-exon-Sc0000050-1564993656:341103..341134BlTCONS00063053-exon-Sc0000050-1564993656:341103..341134Branchiostoma lanceolatumexon
BlTCONS00063053-exon-Sc0000050-1564993656:340672..340745BlTCONS00063053-exon-Sc0000050-1564993656:340672..340745Branchiostoma lanceolatumexon
BlTCONS00063053-exon-Sc0000050-1564993656:340100..340265BlTCONS00063053-exon-Sc0000050-1564993656:340100..340265Branchiostoma lanceolatumexon
BlTCONS00063053-exon-Sc0000050-1564993656:339639..339696BlTCONS00063053-exon-Sc0000050-1564993656:339639..339696Branchiostoma lanceolatumexon
BlTCONS00063053-exon-Sc0000050-1564993656:339308..339339BlTCONS00063053-exon-Sc0000050-1564993656:339308..339339Branchiostoma lanceolatumexon
BlTCONS00063053-exon-Sc0000050-1564993656:338436..339115BlTCONS00063053-exon-Sc0000050-1564993656:338436..339115Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000050genomeSc0000050:338436..350548 -
Properties
Property NameValue
GeneIDBlCUFF030918