BlTCONS00062733 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00062733
Unique NameBlTCONS00062733
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000050:699177..703298+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00062733 ID=BlTCONS00062733|Name=BlTCONS00062733|organism=Branchiostoma lanceolatum|type=mRNA|length=4122bp|location=Sequence derived from alignment at Sc0000050:699177..703298+ (Branchiostoma lanceolatum)
TTACCTATCCTGTCCTCGGTACTGGACACTAACCACGGAACAGCTAACGT
TGCCTACCCTGTCCTTGGTACTGACACTAACTACAGCTACCCATTTTGTC
GTGATTTCCCCCGATGATGCCAGGACAGGAGCAGATTTAACCGATCTTAA
CCGTTCTCAGCAGATTGGTATGCAATGATACAGACCACTCATTAGCGCCC
CCTGGCGGTTTAGTTACAACGTGTAAGCTGACGATAGATCGTGTAACTGT
TACTAGTCGGGTAATCAGGTTTTCCGTAAGGTCAGAGGTCAGCAAACATG
GCAGACGACAAATCGACCAGAAATCTGCTCCTAGCAGTTTGTCTCGTTTT
GCTCTATGTTCTCGATGTCCGCATCTGTTTCTGCGAAGAAAATACAAGCG
ACGAGTTTGAAGGTTAGTGCTTGAAAGTTTTCCATAACGTGGCATGCAAT
TGCGGAATGTATAAAGCTCGTACAAAATCATTTGGTGGGGGAGGGGGGCA
CACTGTGATACTAACGTTAAAAGTNGGGGCTCACTGTGATACTAACGTTA
GAAGTATAACTTTAGCTAGACAGTAAGCAAAGTCAGAATATGACTTGATG
TAAGTATTAGTCTATGGTGCTCATCAAGTAGTCCTTTTGTATGCGTTTCA
ATGGCCATACCAAATATTCGTGGAGAGCAGAAGACTAAACATAAAGTTCT
TGATTCAAGATTAGGCTGCTACAAGAAATAATAAATGCAGAGAAGAGTTC
CCACCAGTTTTTAACATGTTGGTGTGTATATTAATAAATGTAATACATAA
ACTCTAGCACAGTGCAAATGACATTGTATCAAAAGATATTTCGTATCTTG
AATGTATCAATCTTTAGATATGGATTAACAATGTTATGATAAATGTAACC
AAGTTTTTGTTTCAGGTTTTGAAATCAATGTAACAATGGGTGCCTACGTA
GTGCTACCGTATACCGTGTCTATTGGGAAATAAACCATTTTTGATTGATC
AAGCCTTAAATTTCACCTCTCAGAGTACCTGCTATGCCGACAGTGTGGAC
TGGAGATTGCCAAGGCCTCGGACTTGAACAAGAGACCAAGCAAAGCTGCG
CACAGACAGAGAAACGACACCATCGCTGGGGTGGACGGGGTGCTCATACA
GCTCTTTAAAAACCCTCAAGGTGAAACCTGTGTTGTTGTTGACCTTGTAG
CGTCTAGTGACACATATAGGGCAGCAAGTTTGATTTTCGCAATTAGTATT
TTGTAAAAAGGGTGGATTAGGGATTTGGTTGAGATAGTTATTTCTCTCAT
CCCTGATTTCTTCGGTTTTCCTTTTTGCTTTACAAACCTGAGACTTTCAT
CAAGTTCATCCTTCCAATTTCTTTTCTCCTGCCACAGAAAACTATTTTGA
AGTTATAACAGCAGAAACAGCCAATGTCCAACAACATGGGCAGGTAGGCT
TGTTTTTTCTTCTTGATAAGTTTAACAATGCCTTGAATCTCATGATGTAT
ATCTCTTGAATACTTTCTTACAAACAGGATTTTACTGTAGACATTAAACT
TCCTGCTAAGTGCTATCCCACAAGTTGATGACCACTCTGTCGTAGCGCGT
GTAGTCCAGTGGTTTGTAAGCCTGCCTCTGGACCAAGAGTATGGGAGTTT
GAGTTGTGGCTGTTGTCACTCACCTGACATGCATGTTACTGGAAAGGCAT
GGTCCTCTGTTCATTGTACTTGTTGTAAAAAGCTATGTACGGAAATTTCT
CAGGTTCAATGAGCCTGTAGATACTGTACATAGCATCTGTCTTCTCTGTC
ATGACCAGTGGAATAGTAGCTCTAATGTCCATTTGAGCTGAACTGGATTA
AGATCACTTCCACTTTTCACCCCCAGCCCTACCGACAGGACACGTGGTGG
CCAGGCTTCTCCTGGAAAATCAGTATCTGCCCTCGCTGTGGCTTCCACCT
CGGATGGTAGGTGAACTACGTCGTCTGATATATCCCCATTGTAGTGTTGT
TTTTCACCTTTTAGTGCCTAGTGCAGCATCTACCTCAAACGGTATGTGGA
GAAATGAACTGTCTGGTAACATCTCCGTCAATAGTTTGGTATTCTCTAGC
TATCAGCCTATCAGAGAATTGCCTACTACATAGATGTTTTCTTTAGGTAA
AGCTGATTCTCTGACAGCTGGTTAAGGCCACACTCACAAAGTGAACTCTC
TCTCTCTTAATTACATTGTACAGTGTGAATATTTCCGCCTTACATTTTCA
TCGTGATTTTTCAAATTCTACAGGTTCTATGAGCCGTTCTCCCAGAAAGA
AGAGGAGCAAACTTTTGTGGGGCTGATACTGGACAACTTGCTATACCAGA
AATGTGAGTCTTTAACATTAGCCACATTTCTGGTGACAAAATGTCTGATG
TTCTTGCTCAAAGCTTAGTACTGACAATGAGTTGTTTTATGAGTTTCTTG
ATTCAAACTGGGAGAAATATGAATAAAAATACTCTTTAGACCACTGTAAG
AATGTGATATCTCAAACATGTACAATGTTTATGTACATCAAATGATCAAT
GATTTCTAGTACCAGTTGTTTCTCCTCCTTTTCACAGATGCAGACAACCT
ACTGGTGGTTCCAAAGTCCTACAGGAGTTGATGTCATCACCGGTGCTTAT
AATCATATACAGTTACAGGGGGTTGGCCGGGAAATCTGGGGTTTGTAATC
ATGTTGAATATGGGAAATTCTATACAAAAATTGCAATTTCTTTAAACAAA
AATACTTTTGATTGCTAAAACTTGATTGGACAAAAGAAACACAATTGGAA
TACATTAATCATGGAACAGCTCGTGTATACCATGTTAAGTATTTCCAAGT
TGCTCTGAAAATGGCCTAAATTCTATATACATGTACATGTATAATGTAAA
ATAATATAAATTTGTAAAGTGGAACATGGTAGACATCAGTATGTAGCTGG
GCAGGCGGAAACTTCATGTCTTTCTTCCCACCACCCACCATAAAACTTTT
CATTATTTACCAAGCCTCTTGGGCTAATCTGTCTAAATGTGTGCCAAAAA
CACACTACAGATTTGGTTGCTGATGTGCAAACATCTAGCACATTTGTCAC
CAAGAACCATATAATTATCATCATTACTATTTACTGTCTGTAAATTTATC
TGTAAGTCAACTGATCGACTACAATGAGTTTTACTTGTGCCTTATGAAGA
ACCAATCATGTGGGTCGTACCATACATTATGGTATAGACAAAGGACCAAT
CAGATAAGCTGTACAATACGCAGATGAGAAATAAAGACAAACTAGAGTTC
CACGACCTCATACTTTTGCCAAATGATTTTTAACTGATGTATCATGAGTG
TTTCTCATCGATTATAAATCATACCAGTTGATCATCTTTTCTACCAAATG
ACAGAAGTTGTCCAAAGTCTTCTTGAGTTATGCTGGTCATTTACAAACGC
TACCCAAAATATAACCTTCTCTGCGAAGGTACTGATCACAGACTTGCCTG
TCTAAATTGCGCTCCTAGCGACCGGCCCGACAATTACCGCCCCCACCCAG
CGAGAGATTGTGTAAACACAGGCTAATAACAGTCCAGACGTTCAGGAGGC
TAGACCAAAACTGCTATCATTGCATTGAGTTTAGGACACACCGAAAACTG
ACAGTGACACATTATCTATGACTATGGATTACATTGGGAGCAGCTAAAAC
TATCACACAACTTACAAGGAACCGTTCAGGGAGGAAGGAAGAGGTAACGG
AATAGATGTGAGGATGATATCAGATAATGGACAGGCATGGCACAAAGTGA
AACATTAAGAAAACCAGAAAATCGAGAAGGATGGAGACAACTGTTTGCTT
GATCTTCAGTGGTGCCCCAACGTTACAATAGTTAGACTAAGGATAGATGA
GAACTGAATTGAGTTGGTTTCACTTGTAGTGTTTCACATAAAGCGTCAGG
AGACCCGTCCAAAACTATGTGTCTGTCTGACATAATTAGTTTTTAGGAAA
ATGAAAGTTAAAACTTTGATGCAATAAAACCTTGAATCACCAGACTGTAC
ACCTTCTCCTGGGTTCTAGCAGATTCTGTACTAATTATCTCAACTGGGCA
CCCCTGAGCTGCGATACCTTCA

Coding sequence (CDS) from alignment at Sc0000050:699177..703298+

>BlTCONS00062733 ID=BlTCONS00062733|Name=BlTCONS00062733|organism=Branchiostoma lanceolatum|type=CDS|length=522bp|location=Sequence derived from alignment at Sc0000050:699177..703298+ (Branchiostoma lanceolatum)
ATGGCAGACGACAAATCGACCAGAAATCTGCTCCTAGCAGTTTGTCTCGT
TTTGCTCTATGTTCTCGATGTCCGCATCTGTTTCTGCGAAGAAAATACAA
GCGACGAGTTTGAAGAGTACCTGCTATGCCGACAGTGTGGACTGGAGATT
GCCAAGGCCTCGGACTTGAACAAGAGACCAAGCAAAGCTGCGCACAGACA
GAGAAACGACACCATCGCTGGGGTGGACGGGGTGCTCATACAGCTCTTTA
AAAACCCTCAAGAAAACTATTTTGAAGTTATAACAGCAGAAACAGCCAAT
GTCCAACAACATGGGCAGCCCTACCGACAGGACACGTGGTGGCCAGGCTT
CTCCTGGAAAATCAGTATCTGCCCTCGCTGTGGCTTCCACCTCGGATGGT
TCTATGAGCCGTTCTCCCAGAAAGAAGAGGAGCAAACTTTTGTGGGGCTG
ATACTGGACAACTTGCTATACCAGAAATATGCAGACAACCTACTGGTGGT
TCCAAAGTCCTACAGGAGTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062733BlTCONS00062733-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062733-exon-Sc0000050-1564993656:699177..699588BlTCONS00062733-exon-Sc0000050-1564993656:699177..699588Branchiostoma lanceolatumexon
BlTCONS00062733-exon-Sc0000050-1564993656:700200..700346BlTCONS00062733-exon-Sc0000050-1564993656:700200..700346Branchiostoma lanceolatumexon
BlTCONS00062733-exon-Sc0000050-1564993656:700564..700619BlTCONS00062733-exon-Sc0000050-1564993656:700564..700619Branchiostoma lanceolatumexon
BlTCONS00062733-exon-Sc0000050-1564993656:701053..701132BlTCONS00062733-exon-Sc0000050-1564993656:701053..701132Branchiostoma lanceolatumexon
BlTCONS00062733-exon-Sc0000050-1564993656:701450..701529BlTCONS00062733-exon-Sc0000050-1564993656:701450..701529Branchiostoma lanceolatumexon
BlTCONS00062733-exon-Sc0000050-1564993656:701764..703298BlTCONS00062733-exon-Sc0000050-1564993656:701764..703298Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000050genomeSc0000050:699177..703298 +
Properties
Property NameValue
GeneIDBlCUFF030818