BlTCONS00062709 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00062709
Unique NameBlTCONS00062709
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000050:610594..620916+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00062709 ID=BlTCONS00062709|Name=BlTCONS00062709|organism=Branchiostoma lanceolatum|type=mRNA|length=10323bp|location=Sequence derived from alignment at Sc0000050:610594..620916+ (Branchiostoma lanceolatum)
CCAGTACTTTGTGGTGAAGAACTTTGCGGAGAGGCTGACAGACTCCACAC TAGACAGCTCCATCTCTGACGTCCTGACCAGGCTGTGTCAGCTGCACGCT CTACATGGACTGGTCACCAACAGTGGCGACTTTCTGGAGGTAGGATATAC GTCGTAATATCCACATGCCTCTCCACAAAGCCATACATTTTACATAATGT ATGTACCAGAATATAGAATGATCGCAAATCTGTTATGCTACCTTAAAGTA AATGTTTGATCGCCTGCAGTCACCATCCTTAGCAAGTTGTTTTTGTGTGG GAAAGATAGTCTTTTTTTTTGGTTAAGGAACAAGAAACTATCCAATTTCT ATCAACATGATCTTAAATTCATCAAACTGTAGGTTAAAATGTCTTTGCAG ACGTTAGTGTTCACTCACTCTTTCTCAGGATGGCTACTTGACCGGCACGG ACATCCGCCAAGCCAGACGTCACATCAACGCCCTCATGGCCAAGCTCCGT CCTGACGCTGTGGCTCTCGTCGACGCCTTCGACTTCCCGGACGGGATCCT GAACTCCGTACTGGGGCGCTACGATGGGAATGTCTACGAACATCTGTTGG AGTGGGCCAAGGCCTCTCCTCTCAACAAAACGGATGTGAGTACAAAGAAA CATATTTAACAAGAAATAGGCATGTTGGAATTAGATATTGTGAACAGACA TATCTGAAAAATCATACAGTTTTAATGTTTATGCCAACATTACTTGTCTA ACAGTGTTTACAAACCATAGATCAATCACAGAGAACGAAAATGTTGACGA CAGTTGTGTTTAGATATGTATATGTTGTTGATTTACAATAAGAATTGTTG TAATACCTCACACACAGGTGCACCAGTCCTACCACAAGTACCTGAAGCCG TTCCTTGAAGCTAACAGGGCCAAGCTGTGAAGACGTCTGATGACTTTTCC AAGATGAACTCTGATTTTCTACTGCTACTACTGCTTCCAGAATTCTTTTG CTAGACCCTAAAAAATTGTGCTCATGTAATTCTACATCATTGTATGCTAA CATCATATATGATGCCTTGAAGGGCTAAAGTTATCAACCCAGAATCGAGG TGTTTAAAATAGAATTTTTTTCCCTAGTGCTATCGTAGAGTCATAGACTT GTTACCACTAAGTACAGTGGATAGCTTTAAGCAATACTTTCAGCTGTGCA AAGTTAGGTGACAGGTCGTTCAGTGTAATATAAACAGCTGCTGTCGCTCC GCGTGCCTGCGTATTGGTATTTAATACCTTCAAGACAAGACAAGATGGCA ATAAAGATCATCCTGTACGACTGCTTCTGCTGTTGCTTCTGCTGCTAAAA TGAAGAAAACGTCTGTAAATTTTCTATCACTGACTGTTAACATCATATTT CCACATCAATGTCACAACTTAAACATTTACAATGAAGTTGACCAACATGA CAAACCTACTAGAGGCATCCTCGTTCACCAGGACCCTTCCGCTCCACGTT ACGTAACGTGGAGCTGAAGGGTCCTGGTGAACGAGGATGACTAGAGGTAA ATCTTTGATATGATTCTATATGATGTAAACTACACGATAGCGATATTGTA GCCATATCATTATTCTGGTTTAAGGTTGCCTGAGTTACACATTTTCTCAC TGTCAGGTGCTGATTGGGCCCGTCCCTGGTGCTGAAAACCATCCAAAACA CACACACACCTGTCCCTGGTGCTGAGAAACCATCTAGAGGGCCTGACCAG TGACACAGCTTCTAGAAATGTTGAGTTAGTCAGGCAATGTGTAGGGCATG TAATTTTCCCACATGTTTTGCTACTGCAACTTTTACAATGGCACAAAAAT GTGAAAGGGCTGCTAGAAATATGATTTAGTCAGGCATAGTTTAAGGTACA TGTATGTCATTTCCTACCTGTTTTTCAACTAGTACTATTTACTATTGCAG CTTTTACCGATGTGCAAAAATCTATATGGTTTGAAAGTGAATGGAGACAG TGATATCGGACGGGAGAACAAATTTTGTATTGTTGAACAAATGTACTGTG ACGCTTTCATTTTATATTATATTATATGATATGCAGTTTTATATGGAAAA TGCAAATTATACAATTTGTAAACAATCAGCCATGTAAACTGAAGTATTGA TGTCAAAATCTTTGGTAATCTCACAGTATTTTGCAATAAATGTATGCATC GCTTCACACTCACTAGTATTTGATCACTTCAAGTAGTCTAGGTATGGAAG TCCCCAGGTGACAGCCAACCAACATCATATCTTTGGAACACTTAATATTA TATTCTAATCAAAATCAAAAGACATTGGTTTATCAAGTTAAGAGATGAAT GAAAATATCCCCTTGCCTTGGTTGTTCCGAAACTTTTTAAGTGCTTTTCC AAAACACCCAGTTGACAAGAAGTTTGGGTATGATTGTAACATCATATAAA ATAAATCTTTAAGAAACTATAGAAATTGTCCATTAAACAAACAAAAACAT AAACTAAATATATAACTCCTTTACAAACCAAGAACATTAGATAGATACAT TTGTAATGTCCTCGAATAAACAAATAAAGACCATGCTTGTTAGAGAAAAA AGATCAACATAAGGAATCCTTCAAATTACTCTTTGTGTTCATTATCCATG TCAGGACATGCAAACTAGACATCCACGACTCATGCATTGAGCGTATGCAA CTTTATCTAATACACAGATCTTTGTCCTAGCAGTCATCTGGTAGAGCGAG CAGGGGTCATTGACCTAGTGGCCACGACCTCTGACCACATTAACCTTTAC CCTCATGATCAGCACTTCCTGAATACACCTGCAAACAAAAAGACCTCAGT TTGTTTTCAAGCACAGTTTTAAACACTTAGGGCATGAAGGATCACTGCCC TAGCAGTTAGCAACCCTTGGCCTCGAATGCATAAAAATGGCGGCCAGGAT GAACCCAGACTTGCGGAAGGAGCGAGAAAATGCCAGCTTTGACCCAGAGA AGATCACAAGCTTCCTGTGGGGAGGCAAGGAGAGAGTTCAAAGAAAGAGG GAGTTGGGTGAGATTTCAGTTGTATCTATTAGAATAATTATTAATTTGTA CCTCCTACTAGAAAACATTAACTATGTTATAAATCTGTGACCTGTCTTAG ATTTGTACTTACAGAGGCCTTAGTAACTGCTTTCTTCACATTCTAGTCTT TATAATCATAATCAATGGTAAAATAAATGGATTTACTAGACTACAGTACT GTAAATGCAGAAATGTTCACGGATGTAATTTTGCAGTATAGAAATATGGA GTGTTTGTGGCGTTTTCGTGTTTGAAGCAATAGTAGTGCTACAGCAACAT ATAGTGAAACACCTTTCGCGGTGATTTTAAGTTCGTGTTAAAGAGTTCAC CACGAAAACTGCGAAAGGGTTGCAGTCTTATTAGGATGGAATGTTAAGCC ATGGTCCATCGTACTTGTCAAAAAGAGCTAGAGGAATTTTCCAAGGTACA ATGAACCTGTAGATACTGAACATCATAACTTAGGTGTCTATCTTCTCTGT CATGACCAGTGGAAGATTAGCTCTTCAGTGACCTAAACTGGTTCAAGACC ATGTTCACTTACTTTCGAGGTACTTTCTCTTCCAGAGTCGCTTGCCCTGA ATGACCCTGACTACCAGCATGAAGACTTGAACTTCATGTCCCGAGAACAG CAGTATGAGACCCAGCTGAAGAAGGGCATCCTAATGGTCACAAAGATGAA GGAACTGAAGATCACTGATGAGGACCAGCTCTTCTACACAAGGTGTTTCT GCCATCATTTTTGTACGATCTTGTGCTCATACCGAATCAACATGTACTGA GTGAGTGAGTGAGTGACATCCTTTACTCCTAGCTCAGAAACATCACTCCT AGAGGGCTTCCTTTTACCAAGAGAATACAGTTGATAGTAAGAATTGGAGG ACACCCCAAAAGAGCAAGAACAAGACATCTCAAAGTTTAAGGTCTAAAGG GAATAAATTGCCAGTATGTGTTAGATGCATAGAAATTTGAAAACTCATAG GTGAGCAAAAAGTTTTGCGGTGGTTTTAAGTTCGCGCTGAAGAATTCACC GTGAGAACCGTAAACATAAAACCACCGCGAACATTTCTGCTTTACTGTAT ACATTGTCCTTGTTAAAATATAGTTGAGCATTAATTAAGAGATTAATTGT TCTGTGAGTGAAAATAAAACATTTACGCACTGACCAATGGACTCTTAACA TTATACAGTGCTGTTCTTGTGTCAGACGTACATCCCATGATGGTACACAC GAGGATGTTTCTCCCCACCCTGTACGGTCAGGCCACGGAGCAGCAGAAGG ACAAGTGGCTTAAGTTGGCGGAGAACTACGCCATTGTTGGCACCTATGCA CAGACAGAGATAGGACATGGTGAGACATTTTTTCTCTAATACATTGACTG ATCATGGACTCTTCCAGAAGTGATCTTTTGGTAGCTGTTAGGTCTTGTCT TTGTCAGCAGGGCAAAGCCATTTGTAATAAGCCATATACTAAGTTGCTGA AAAGCCAAACCAATAAATGAATAAATCTTTTGACAGGTAATGGTAAGAAA ACGTTTTGGATACTTTATTTAGTCCATTAGCTAACATATGAAAGTAGCTA ATCTTCCTGGGCATGAAAACAAGTTTATAAATTACATGTATTACATTTTT CTTTATTTACGTAAAAAGTTTCTACTGTGTAAAAGCTATCTACTGATTAT TCAATCCCCCAAGTGTCATTATTTTTTAGCTGTCACTCTTTTCTCCATAA GCCTTACATTAATGCAGCTTTTGAAATTCTTTTTTAGGAACCTTCGTTAG AGGCCTGGAAACGACCGCGACCTATGACCCTAAGACACAGGAGTTCATCC TCAACACTCCAACTCTCTCAGCATCCAAGTGGTGGCCTGGCGGAAGTGAG TTTTAGCCTTCACACCAGAGATGATGGTGTTGAATAGACGAGTAATTATC AAGGCTAGCAAGACCAAGAGGTCATGGGTTTGATTCCTAAGCAAGGAAAG TAGTATTTTGCAACATTTTTTATGTTGTATGTTTGAAGAATTGAACAATT TGTGATGCCCTCACACAGTGGGAAAGACGTCAAACTATGTAGTCCTGATG GCTCAGCTGTACATCCACGGCAAGTCGTATGGCGTCCACCCCTTTATGCT GCAGATTCGTAGTCTGGAGGACCACAAGCCTCTGCCTGGTAAGGTTTGAT CACACTCACTAACTCACCCACACTCACTCCGTTGGGCTCGCTCGAAGTCA TCTCATGACCAGTTGTGATAGAACATCCAAATGACGGTTTACAGTAATTT CCAAGTACATTTGTAGATGAATCAGTCAGGGTTGTTTTGTGGCCTTTCCT GCCTTTCTGTGACTCTCTCTAATGCTGTCACAGTGCCCTTTCTTGTGTCG ATTTAAGCTTGTCATAAATGAATAAATCTACAAACAAAGAAACAAAACTG AATTCATTAAGAGGGTGCACTACTAGATGTTGCAAAAACTATAATCCCAT TACTATAATACTAATACTTCTGATAGCTGTTACAACAATAATGCAAACCT CTTACGCCAAAAAAAGGCAGTTATCATATGCAATTCTAGAACCAAGAGAG TACATAAGGAAGGTGCTGACTACACAAAAGTTACACAAGCAACTGGATAG ATTTTGTAAACAGTCAGACATTTCCAGTAGTGGATGCTTTTGTATTATGT GTATTATTACCAGGATGTCTAACCTTCATCGACGTAAGGGGCTAACTAGT TTGCTTGTTGATTGTGCCATTTTTAGGAGTGACTGTAGGTGACATAGGAC CCAAGTTTGGATATGATGTCATGGACAACGGCTTCCTGGCACTCAACAAT GTCAGGATCCCCCGGGAAAACATGCTCATGAAGCACTCTAGGGTTGGTTT AATTTGTTTATGTTATTTGTACCCATTTGTAGAGATTGAATTGTATTTAG ATATTACCTCAACATTTACCTTGTACTACAAGATTTGCCTAGCTGTGGCA TACATAGTCCAGTGGTTAGTTAGCCTCTGGGATAAGAGGTTGGGAGTTTG AATCCTGGCTGTGCTCACCCGACATGCACGCTGCTGGAAAGGACAGTGCA TAACCCCGATCCTTAGGACAGGACGTTAAGCCACTGTTCATTGTACTTGT CGAAATGAGCTAGGGGAATTTCCTTGGTACAATGAACCTGTAAAAACTGT ACATAGCGTCTGTCTTTTGTGTCACGACGGACCAGTGGAAGGATAGCTCT CTAGTGAGCTAGACTGGTTCAATATCGCTTTCACTTTTGTTTCAGGTTGA GCCAGATGGTACATACGTGAAGCCGCCAAGCACCAAGCTTGCTTACGGCA CCATGGTACAAGTTAGAGCAAATATTGTCATGTACTCTGGAGTGGTACTA GCAAAGGCTGTTACCATAGCAACTCGCTACAGCTGTGTTCGCCGACAGTC CGAGATGAAACCGGGGTGAGTTGCCATCATGATTCTTAAGTCAATGACGC AAATTTGACACAGTCACTGCTGTACATCTGTATGCTGAAGCCTTTGTTAA CAACCACAAAAAAAGTTGCTTTTCTAGTTTTCCAAGTCACACATTTTGCA TGGCTGCAATGATCTATTCCCAACCCTTCTAGCCATCCAGAGCCCCAGGT GTTGGACTATGTGACCCAGCAGTACAAGTTGTTCCCCTACCTGGCTGCTG CCTACGCCTTCTGGCTGACAGGACAAACCATGATGTCTTTTTACACCACG TCTTCCAAGCAGATTTCTAAGGGAGACATCAGCGTCCTACCTGAGGTAAT GAAAAAAGAAAACTGAAAATTCCAGAGTAGATTACTTTAAGCCTAAAAAA AGAAATAAAACTATATGCATGCTTGCAGATCTAAAATACAAATAAGACAA ATATATTTGAACTAAATATTAAATTCAGAACATTTTGAAGGTCCCAAAGA ATCTGAGCATTAGAAGAGCAAGAGTGAGTGAGTGAGCGAGCGAGAATGTG AGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAG TGAGTGAGTGAGTGAGTGTGATCGAATGAGCAAGTGAGCGAGCAAAGGTC TAAGTTGATCCGTTGGCACTGATTTAAGGTAATACCATTGTAATTTGTCC AGTATTTGATGATCTTTGTCATGTTCCTGATTGCCTGATCAATATGAACT TGAATCATTCCACATTAGTGTTCAAGCAGTCTATAGATCACATACATGTA CTGTCAGATTCAGCCAAGCATCACATCACTGATTTCGTACTTAAATCCTC ATTTTGCAGCTTCATGCCCTCTCTGCTGGTCTGAAGGCTCTGTCATCGGC GGCGGCAAATGTGGGAATGGAGGAGTGCCGCCTGGCATGTGGAGGACATG GGTACTCTCACGCCAGCGGGTTGCCCCGTCTGTACACCAACATGACTCCT GCCTCAACTGCTGAAGGAGAACATGTTGTATTGATGCTCCAAGCTGCAAG GTTAGTCTAATGTCACGGAGGGGACGTGAAGCTGCTCATCCCGTGTATGG GGAGTCCCATGCTGAAACCATTGCACCATAAAGAAACCTGATGTTAGTCC TGAGGTTTAAGGGAAAATAACAGGCGCTGCAACTCCCAGCATTTTCAATG GTATGGTTACAAATATAAACTTTCCTCAATCCCTTGAGTGGTTGGTGACT GGGGGTGGTTGCTCCAGACAATAGGGTCTTAACTATGTAAAATTGAATAG AACTGTTTAAATGTGGCTAAATGTGATTGAAGGCGGTTTGCTGTGCAAGG TGGTTTGCTGGCTAGCCTTACTAAATCGCGCTCCTAGCGGCCGGCCCGAC AGTTACCCGCCCCTTAGAGGAGGGGGGCAATGAACTCCAGCTAGCAACAG ATTGTGTAAACAGAGTCTGGTTTGCTGGCCAGGTTTCATTGTAGAATTCA AAAGAAAGTAATATAAATCCACAACTACTTGCTATGGCTAGCTGACAAAT GACATCCTTTCCTCCCCCGAGGTACCTGATGAAGAGTTACAACCAGTCCC TGCAGGGTGAGAAGCTGGCTGGTTCTGTGGCGTACCTGTCCGGTGTACAG CCGGTTCCTGCAGCCGGTAGAACCAGGAACATGCTGGATCTGGGGGTTCT GTGTGATGCCTACAGGCACAGGGCAGCTAGGTTAGAACAAGTCCCCTTTT CAGGTGTTAACAGTTACTGTGTGTTGTTTTTTCCCAATTTTAGGTGCAAT GTACCCTTAATTATCACGAGCATTCTTAAGAAATTATTGAAATATGCTGT TAAGTAGCATGAAAATATCAGAAATCAAAGACATAAGAAAGTACCTGCCA GGAAAATGTAGTCTACAGTCAAAACTGCCCAAGGAAACCACAATGGGGCC AATAAAATCTGGTCTATGTGACTATGTGGACAGGCGGTCACTACAGACAG GATTCTTAATGCTTGTGTCAATTGTAAAAAAGGGACCACTAAAAAGTGGC TACATCGGCCAGGTGGTTCTTATGTAGAGGTGATCACTTGTACAGAATTG ACTGCATTTTGAAGATGACTCAACTGTGATCTGGTTCATATATAAGACGT TGACAATGCGGATAGAGATGGCTTTTGTTCACTAATACTCCTTATGAAAC TTATCATGAGCAGCACGTCGGCAGAATGTAAGCGTTTAAGGTCGTGTTCG CGTATTTAAGGTTAATATCTCGTATATATGTTCATATAGTTGTGACATAT TCTTATGCAATGGCTGTTACTCCGATGCAACGTTGACCAAAGAGAAGAAA AGAGATTCGGCAGCTGTGCAATAGATTTAAATGCCAGGCTAATTACCGTA AACGCATTACGTTCTGCTGACGTGCTATCATGAGCTAGCATGGCATCCTT TATTCTATCATCACTGACTCCGCAGGCTAGTTCACGAGGCTGCTGCACAA CTCAGGAGCGAACTGCAGGCTGGGAAGGACCAAGCAGATGCATGGAATGC CACTTCTGTGGATCTCGTCAAGGCCGCCACTGTTAGAAAATTTGCTCAAA GCTCTAGCTGCTCTAAACTCTAGTTCTTAATGTGTGTACAGCCTCAAGCT CGCTGAATGTTTATGTAGCTTATCATTGATACAGTTGCCAATTCTAATTT GTTGTACTTTGTCTTCACTGCTAAAATCTCATTGTGATTTTGCCTTCTAC ACAATCAGAGTATTCTACTGTCAATGTTTGTCTGAGATGCCCAATTTTAT GCAACATATGGGGTAGATTTGGACATGTTCAAGTCGTACTGATTACTGAA GATTGTTAGAGGACCATAGGCATTGCATATGCCTTCAAGTTTTTTTGATA ACGACATCAGCAAATTTAACTCTACAATGTTTCCAGGCCCACAGCCAGTA CTTTGTGGTGAAGAACTTTGCGGAGAGGCTGACAGACTACACACTGGACA GCTCCATCTCTGACGTCCTGACCAGGCTGTGTCAGCTGCACGCTCTACAT GGACTGGTCACCAACAGTGGCGACTTTCTGGAGGTAGGATATAAATTATG TTTCTCTCAATCTCTACAATTTACATAATCTCTACACCCCATTCATAATG TAGCTGTCATATACAAGAGGTATAGAGAAAATTGGATGGTAAAGTTGTTT TGCTACATCTTATAACATCTAAGAAAGTACCGGTAAGCATTTTACCTCCC CCATTGACCAGCCTTTAGCAAGTCTTTTTAAAGGAAAGATTATTTCTTGG TAACAATGGGGAGTTTCTTTAGGTACAGGGAATTTGTTCTTTGAACTCAA CACTGACATGTTTTATGTCTCAGGGGACTAGCTTATAGGAGACAGCTACC TCTCCTGTAGCTTGACTAAATTGCGATGTAATGACTCACCCCTCTGCCTA CGAAAGTGAGATTGTGTAACACAGTCTACTGACTCCCCTAGCTCACAATG ACCAGCCTTAGTGATTTTTTTTGTGGGAAAGATGTGCTTTTCATTGCTAA TGAACAAGAGACTTTCTGTCAAGCAGAAGGAACACAATCTTGGATTCATC AAACTACGGAAAGTTAATGTCCACTCACTCTTTCTCAGGACGGCTACCTG ACCGGCACAGACGTACGCCAAGCCAGACGTCACATCAACGCCCTCATGGC CAAGCTCCGTCCTGACGCCGTGGCTCTTGTCGACGCCTTCGACTTCCCGG ACGGGATCCTGAACTCCGTACTGGGGCGCTACGATGGAAACGTCTACGAA CATCTGTTGGAGTGGGCCAAGGC

Coding sequence (CDS) from alignment at Sc0000050:610594..620916+

>BlTCONS00062709 ID=BlTCONS00062709|Name=BlTCONS00062709|organism=Branchiostoma lanceolatum|type=CDS|length=321bp|location=Sequence derived from alignment at Sc0000050:610594..620916+ (Branchiostoma lanceolatum)
CAGTACTTTGTGGTGAAGAACTTTGCGGAGAGGCTGACAGACTCCACACT
AGACAGCTCCATCTCTGACGTCCTGACCAGGCTGTGTCAGCTGCACGCTC
TACATGGACTGGTCACCAACAGTGGCGACTTTCTGGAGGATGGCTACTTG
ACCGGCACGGACATCCGCCAAGCCAGACGTCACATCAACGCCCTCATGGC
CAAGCTCCGTCCTGACGCCGTGGCTCTTGTCGACGCCTTCGACTTCCCGG
ACGGGATCCTGAACTCCGTACTGGGGCGCTACGATGGAAACGTCTACGAA
CATCTGTTGGAGTGGGCCAAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062709BlTCONS00062709-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062709-exon-Sc0000050-1564993656:610594..610732BlTCONS00062709-exon-Sc0000050-1564993656:610594..610732Branchiostoma lanceolatumexon
BlTCONS00062709-exon-Sc0000050-1564993656:611022..611066BlTCONS00062709-exon-Sc0000050-1564993656:611022..611066Branchiostoma lanceolatumexon
BlTCONS00062709-exon-Sc0000050-1564993656:620777..620916BlTCONS00062709-exon-Sc0000050-1564993656:620777..620916Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000050genomeSc0000050:610594..620916 +
Properties
Property NameValue
GeneIDBlCUFF030808