BlTCONS00062542 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00062542
Unique NameBlTCONS00062542
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000049:1661571..1669863-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00062542 ID=BlTCONS00062542|Name=BlTCONS00062542|organism=Branchiostoma lanceolatum|type=mRNA|length=8293bp|location=Sequence derived from alignment at Sc0000049:1661571..1669863- (Branchiostoma lanceolatum)
CGGAGGTGGCTGCATGTCCGTCAACAAATATCTGCATTTCTATGTATTTG TTTTGCATTTCTACCTTTTGAGGGAGGAGGGTGATATCGGTCAACGATAG GAGCGCGATCTTAGTCAGGCTGATCATATATATATCAAAGACTGAATCGT TCTGAGGTCCGCCAGTGTCGACAACTGTTACTACTCTCTGGAAGGTAGAA TAGAACTGAAGTACTTCCTTGATGCAATTATATTAAGACAGTTACTTGTC TGTCCACCGTACGTCATATGACCTGGCGATCTTTGTGGGAGGGGTGAGGT TGCAAAACCGGTTTTTGATTTTTCAGGGTGTGTTGTCATGGTGCTCCAGG CCATCTTATGGTGAATGGACGGCTCTGATTGGTAGTCTCCCAGAGTGACC CATAAAGTAACTGACCTCGCACTGAGCAGCGTACTTTCCGTGAGAATCCT GAGGTCCGCCAGTATCCACAACTCCTCTCCGACAAGCCGGAATACAGGTA GGTACTTATTCTGATCTTGCTGTTGTTGTTGCATAAATCGAAGATAGAAA TCATGGAAAGTTGGCCATAGATAGGTTTGATGCGGAAGATTTGTCGTCTT TTCTCGACTCCATAAGTTGCTGAACAATAGGCCTAAGGCAGATGTGCCAT TTGTAACGAAATCTATACCAAGTCTTCTGATGAAATATTTCCGACATTTA GGACAATTTATACTATTTCTTTCAGTCCTGGTGTATTATACTGACGGTTA TGCTGCTTGACCGATTCAAATTCTGCCGATTCATATGAAGCAAGATTCTG CTTCAAATGTTGCGTTGTTCCCTCCAGAAGCGGCCCTCATAATAGGCTAT ATATTTACGTTTTTTAAAGAACAAAGGATGTTGAATGAAACTACTGAAAC GATGTTATGTTTTAGCTTCTTTCTATCAAAGTTGCGCTTGACCAATCCAT TCCCACGTTTTAAAACGGAATGTGGTTATCGATATCACGGCGGTACATTT CATATGAAAATGGGAAATTTAGGTTTTATCGATCTATATGGGTCACAATG TACATGCTAAACCAATAAATAATTAAAATATAGGTAGCTCCAGCTATCAT CAGCTCCGGTTATTATGGTGGCCTACAGCTAGGTCAGTTTAATTTGCCTC CGGCATCGGATGGTCAGTTTCTCAATGGTTAGTTGGAGAGGTAGGTTAAG TCGCCAGTTATGAACACATTTAACTACATCGTAGTTTGCTGAATTTTGAT ACGTCTTAGTTGCCCTCTTTTGCAGCTGGACGCACAGAGGACCGCCTATT TCCCTGGTAATTACATAGACATGTTACTGTGTAATTTCTACCATGTTTTT CAGTCCTGGTGTGTTGTAATGACGGTTATACCGCTTGACCAATTCAAATC CAGATTTTGCTTCAAAGGTTTCAAAAATCTTGTTTTATCTCTAGCTACGT TTTTCTCTCCAGAAGCAGGGCATTTCACACGTCGAACGACGGCCCTCATA GTAGGCCGTAAGTTGTCTATTCGTGTCTATTCTCAACTCCATAGTAGGCT ATGGTTGTCTATTGATTGTCTATTCTCAACTCAATAGTAGACCGTTTGTC GTTTGTTGTCTATTCTCAACTCCATTAGCCTGGAATCCATCCTATTTAGC TTCCGGCCGCTACCCAAGCTCCGCTGCCTGGCGCCGGAAGCTAAATAGGA TAGATTCCAGGCTACAACTCCATAGGTTGCTGAAAAAAATAGGTTGAATA ACTTGCCAAAGGCGTTAGTTGGACAGATTTTCAATTTGTAACCATATACT ACAATGGCTCTCCACGTCCTCTGATGAAATATCCCCCACCCACCCCCACC CATTTTGAGCAATTTCTACCATATTTGTCAGTCCTGGTGTGTTACAATGA CGGTTATGCCGCTTGACCATGTACGTTACAAATTCAAATTCAGGACATTC AGATACTGCTTCAAATGTTTCAACGGGTCATGCCCAACTGAAATTCTTTG TTTTTAATTTTTCGATCAGTTGAAGCGGGTCGGTGGGAGTTGACAGAGAG GGATCAAGATGGCCAACGGCAACACGCCAAGCAAAGTGATCTTCGTCGTG TTCGGAGTAGTCCTGGGATATACTCTGTCTTTGCTGCACAACTTCGGCAC CACCGTCGATACCCACCCTACTGTCAGCCACGATGTGCCTGTTCGCTCTT CTTTAGACGAGTCTCTTCGGTAAGTAAAATCTCAACAGTACTGTGTTGTG TTGTTTTGTGATGTGTTGTGTTGTGTTATGTTGTGTCACATGTGCTGTGC TGTATTCTGCTGTGCCAGTTGTGCTGTGTTTTAATATAAATATAGACGAC TGCGCTTGGCCACCATTAATCATTTTGTTAACGTCCCGATTGTATCTTCG TAAATTGTTAACCCACTTTTAGATATCGAACCTATACTATAGACATCTAA GAGTTGGATTGAACAGAAACATTTCTAGCAACTAACGACTTATTGATCGA TGTAGGCCGCCACAGATACCACTACAGATGCCACAGATACCACTACAGAT GTCACAGATACCACTACAGAGGGATGGTAGTGTACCGCGACAGGGGGGTG GTAGTGTACCACTACAGGGGAGTGGTCCACGGAAAATACTTCTGGACTGC GGAGCTAATGTCGCATCTACTGTGCAGGTAAGAGAACGTTTACTTCTTTA AAAGAACGTTCTAGGAAACTCACGGTTTGGCTTCGTGATGAAGTAAATAT GTTGAAGAAAAACAAATATTTCTTCATTCATAAAAGTGGTAAGTGAGAAA AATCATGTCAAATATGTTCCGTTTCCAAGCAAGCGGCAAATGTTTCACCG AGAAAAAATCCTTGGTTTCACCCGTTGTTGTTCAAGATACTGTCGAAGTG AATAGCTTTGTTATTATATAGACACAAATGACTAGATTCAACCAAGGACC TGATTCAACTCTCATACATCAAATTACATATGAAAAGGGAGAAAGCGTAC AGGAGGAGTCTCCATGGGAAATGAAACATGACAAAAGATATGACTTGGAA ATGTTTAAGTTTCTTTCTGTTCCCTTTTGGGACTTGAATTCAGCAGCCTT AATTTGGTACGCATGATGTTTCACATTATACTGTTACATACCCTCCTAGA AGATTGACGTACAAGATAAATTACCGTATACAGTGTGTTAATTCAAAATA CATAAATTCTTGGAACAAAAAAAACAACAACGAAGTACTAGTATTATGGA AGAACTACAGGTGGTTGGAAATTCAGCTTATATATCTTTAGAGTGATCTT TGTTATAAGAGGTAAGATATCAAGTATCGAGACTTCTATTGTTCTGGTAC ACACAGTTATTCCGGGAGACATACCCTGATGGAAAAGATTACATCATCCA CTCGTTTGAACTGGACGCGAGGCTGGCGCCCTACTTCGCATCCTACTCCA ACCACGTCCTGCACTGCCCAGTCGCCGTGGCGGGGGAAGATGGTCAGTCA TGCCACCCTTAACACTTTTCTACAGGTTTAGTTTAGGAATGGATGTATCT TCTTCCTACTGCTTAACCCTGTAACCAATAGATATTTTGTGTCAAACAGC TACTGCAGTAGGGATAAGGTTTAAGGCTTATACTAATAAGCTTGTACATT TGCCTGTAATGCTCTGTAAATATACTTTCCTTGTATTATCACATTGTAGT AAGGTGTTCTCTCTTTTTGTATCATTAGTTGTTTACTTAATGTTGTGTTG ATATATATGCATATGTCTATGACTATGTTTAGTTTCACTTAAGTGTAGTT TCATTTTGAATTGATATTTTCATTATGTAATACAGTGTACATATTACTCA ATTTGTTTATTTGATTTTTCGCTATAATCTTAGTTACCTGGGTGGCTAAC ATATAAGCTTGCAAGCTTTCGACCCCCCTCGCACATTTGTATTAAGATTT CTTATTGTTTTCACTTGTGTCTTTGACAATTAATCAATCAACTCACTTTT CAAAACGAGGGCTATATTTCTGTGTGATTTTATCAGCCTAGGCGTGTAGA ACGTTGACATATAGAATAGTTCAAAGTTGAAACGTGAAATAAACGCACGA ATTTCCTTATCAGGAAATATCACGGCCTACGCCGAGTCAGCCTGGAAACC GGACAAGGGTGCAGTCGCTGGCAAGGACATGCAGTGGGGAGGGGGGGCCA TCTACGCCTCGGAATCAGAGAAGCAGGGCGAAATTCACGGCCGACGATTC GGTGTACGAAACGTCATACCAATGGTGGATCTGTCCACGTGGATACAAGA GAACACAGGTATGTTATAAATTATATATATATATATATATATATATATAT ATATAGAGAGAGAGAGAGAGTTCAGGCACCACATGTAGCGCGACACATAC CTTTCCTCGGATGTTCTCTAATCATTTGGTAACTGCTATTTCAGCCATAT GTCAATACGGTTGTCAATACAGTCGATAAGGCGATAGGTAAAACTGACAT ATGTTTGCTTGTAGTTAGCATGGTCACTTCAAATTAGTTTATAATTTTAG TCATTGCCATTTAATCATACAAAGTTGCTATCGTCCGTACCCTGTGACGA AGGGTATCACCAATGTTTTCTCCTGAGAGCCGTTGTAGCCATTGAATTTC ATCAGGGGCTTCAAGTACATCTACCTTACATGCGGTTTCATACTAAACTC TTTTTTGACATGTCCAGCCTTGGAAGACTACGTCATCTTCAAACTTGACG TCGAGGGAGCAGAGTACGACATCCTGGAGAAGATGGTCAAAGAAGGGACC TTCAAGTGGATAGACAAGTGCGTGCATTGCTCCTCTATATGGCTTTCACT TAGAGCTTAGTATATATTAAGTCGACTCTACTGGACTAGCTTAGTTTGAT AACACGTTTGCTTACTCTATATGTTTACAGCTTGTACTGTTGTATTTATG TCCTTGTATGTTCCATGTGTTAAATTAGACGACCTGTACCTAGCCCATCG GGGCATGAATGCATAATGAGGGTCTTTCATTCATTCATTAATGTAACAAT TCTTTACATTTGAAACCGCATCATCTGACCGTTGTTGCTTAACAGTATCT ACTAATATGTAACAATACTTTACGTCTGGGACTGCGTTGTTAGCAGTAAC ACCTAGCTTCAGTGCACTGTGAACTAGTCAGTATTGTCCTGGTGAAGATG ACAGGCAGTCATCGAAACATCAGCTCTTGTGAGTTGTAAAATACTTGGTT GTGAATAAAAGAATAGTCTTGCTATTCAACATTTCGAGATGTTAAAAATG CATCCAATAGACCCCTTTCCAAAGTCCGGCGCCATTTTGAGTCTGGTCTC GCGAGAGCACATTCTAGTGCGCGCGTGACTTGATGTAAATGTAAACCATG TATTAAACGTTAAACATTTACAGGTTTTATGGCGAGTTCCACGACTCGTT CCCTATACCAGGATGGTCAACACAAAGAAAACAAGGTCTTAGGAGTACTT TGAAGACCAATGGGATCAACATGCTTGACTGGGCAGGAGAGTACAAAAGA TATGAAGACATGGAAGCCATTCACAAGGTTGACGTAAGTACAGCGGGGAT GCACATGTAACGCTTTCTGTCCACAACTCGTCATCTAATCATGGGATACT TGCACATGTAAAAACATATAAACAAATGCATAGATTCCAGACCCTAGGTG CCTGTAGGCTAACATACAGATATGTTAACGGAAAGGGTTAAAAAATCGTA TTGAGACGTACATCACTGATAAGAAGGGGTGTCATAGAATGGTTCTCTTG ATTTTGGCTGTGTCTTATATAACGTTCGAGGGGGGAACATCTACAGATGT AAAATTGGGGATATATGAAAGTTTCTTGCAAATTTCTGCCCGTAGGCTAA TTGTACGTACATGTACATGTAACACGGGGTGGACGGACAGACACATGCAA TGATAAACAATAAACTTCGGTTCTAACTTATTGGGTTCGGCTTCTTTTTC CGAGACAGTAAAAGACGAATGATCCAACTGTTTCTGTAATATGTGGGTTT TGTGATGTTAATAGGTGAGTAGTTTTCTTATCGACTGAAAACGTGGAGAA ATTAGGATTGAAAATGGCGGCCTCTTTAAACAGCTGATGAAGATAATGAA GATCACCTACTGTCGGTTGTTATAGATCCCAGCTGGTACCCCTGGAACTG CTGGCGTGGCCTACTCCAGCTGTTCTCCCGGTAGTCCTGCCCGCCTGGCC CTGACGGTGCAGGTCGGGATGAACAGGAAGGCGGCCCACAAGCTAGTGGA GACCATCCGGGCGCACCCCAGCAACATGCCGGTCACGCTCTTCGTCTACG GGGACTTCGTGCAGGACTCCCCGGACCTGATCACCAAGTGGGCCGACAGA TATACGATAGGAATACGAGAGGTTCGTTGTCTTCCTTTGAGTACGACTAG TAATTTCCATGTAGAGCTTCCAACAGACTGTATGTACAGTATGCATTCTT TAGTACGAAGAAAATACATTTGTTATGAAGATCACTTCCATCAGCAGTCT AAAGAATCATTAGAAAAGTACAGAATGTCAAAAATAGCAGGGCTTACCAT TTGAAATAAAAACAAATCAACAGCGGATGTCGCTTGAAGACAGAAGGAAA ATGGCCTGTCTGTACATGATGTACAAAATTACTGGTGGACGTACCTACGA CGTACCCGAGCAAGCAGCTATAGAACCCATACCTACACCTCTACTTTCTT ACATCACAAGCTCTCCACCACTATAAGAATTAAGACAAAGACCGGAAGTT TTGCTGCAGTACCAAGGTCACTTGCAGTACAGAGCCCCAGACTATACTTT GACTACCAAATAGACGCCACAGTTATAAGACACCATATTTCAGTTTTGGA GACACAACTATCAAAAAGCTAGTTCAGCTGTGAGGACTTTTTCCCGCGAA TATTTCACATTTTACAGTACGTCGAAGGGCGGTTATACCAATGTTAGTAC CATCATTAATTGTTTTGAAATCTCCCCCATAGAATGCGCCCTTTCCAGCA GACCACTGGGTCCTACAGAACGCCGACGTGATGAGGATGAGTCTGATATC GGCCGTGCAGCGGATGAAGGAAGTGGGGGTGCGGCCAGCCTATTACTATC CGGACGGCCTGTCGCAACGGGTTCAGGATACAGCAAAGAGCAGAGGACTG AGGCTCATTCAGCCGACAACCAAGTTCCCTCCAAACCTTGGTAAGCCGCT TATTTGTCCATCATTTACTAATTTTACACATAAAACATAAGAAATACAAC TTAACATACCATCACACAACTTGAAATAACGTAACGTAAAATGATAAGAA TATATTTGATAAGAAATTTTCCAGAATTGAAAATAAAACCAAATCACGCA AGAAAACATAAATTTTGGTCGTCGGAGTTAGGTCAAACTATAGCCGATTC TTAACCTTAGTCTTCTCAATATCTTTCTCTGAATCTGAAATCTAAGTCCA AACTTTAATCCTTATTTCAGGTACGTTGTTGAGGGAGGATAACTACTATC GGTTCAGAGACGTGGAGAGGACACCTAAGGCGCTCCGGATCCTGTATGAA CGCATCTCGAAAGGAGGGATTCTCAGTCTGGACACTGACCACCCAGACAG CTACATGATCTCAGCTTTCCTCATGGACTACCTGTACGAAAACTCCGGCT TTCAACTTGTCAATGTGAACGACTGTTTGAACTGATAGAGACGTTTTCCG AAAAGCATGCACAATATTTCATATTTATTCGATGGACTACAGATGATATT GTGTTTGAGGTTGAAGATTCCCTCAGTTGCTTCGGTATAGATCTGTGCCA TTGTTAGTCTTAGAGGTATGATTATCGTTTTGGCAGTAAGAGGTCAATCA GTCCTAATCTCTCCTGCATGAAAGTAGATATTCGTGATAGAAGCCCTCTA GTTGACGATTTTGACATTATTTCCCTCACGAGTGAGTTTCGAAGGGCAAG GGGCTTAGCAAAGCTGACTGGGGGGCGTCATAATGTAAAAGAATAATATA GTCAAATTCATTACAACACGACCGTCGTAAGAACTGTAAAGTGATAGTCA TTAGAAACTGTGAAACTGTTTTCCTGACGCATGGCCTCAAAAAGTGTTTT CAAGCATGTGAAGCAACACTTCTCTTAGAGAACAATAGCCCTTATTGATA GACTAACAAAAGTAAAGGGTCTTTAAACTAGTTTTATCTCCATGAAAAAA GGCTTTTTCATGGAGATACTGTTTTGCTTGCAATTGCGTTTGG

Coding sequence (CDS) from alignment at Sc0000049:1661571..1669863-

>BlTCONS00062542 ID=BlTCONS00062542|Name=BlTCONS00062542|organism=Branchiostoma lanceolatum|type=CDS|length=1593bp|location=Sequence derived from alignment at Sc0000049:1661571..1669863- (Branchiostoma lanceolatum)
ATGGCCAACGGCAACACGCCAAGCAAAGTGATCTTCGTCGTGTTCGGAGT
AGTCCTGGGATATACTCTGTCTTTGCTGCACAACTTCGGCACCACCGTCG
ATACCCACCCTACTGTCAGCCACGATGTGCCTGTTCGCTCTTCTTTAGAC
GAGTCTCTTCGGCCGCCACAGATACCACTACAGATGCCACAGATACCACT
ACAGATGTCACAGATACCACTACAGAGGGATGGTAGTGTACCGCGACAGG
GGGGTGGTAGTGTACCACTACAGGGGAGTGGTCCACGGAAAATACTTCTG
GACTGCGGAGCTAATGTCGCATCTACTGTGCAGTTATTCCGGGAGACATA
CCCTGATGGAAAAGATTACATCATCCACTCGTTTGAACTGGACGCGAGGC
TGGCGCCCTACTTCGCATCCTACTCCAACCACGTCCTGCACTGCCCAGTC
GCCGTGGCGGGGGAAGATGGAAATATCACGGCCTACGCCGAGTCAGCCTG
GAAACCGGACAAGGGTGCAGTCGCTGGCAAGGACATGCAGTGGGGAGGGG
GGGCCATCTACGCCTCGGAATCAGAGAAGCAGGGCGAAATTCACGGCCGA
CGATTCGGTGTACGAAACGTCATACCAATGGTGGATCTGTCCACGTGGAT
ACAAGAGAACACAGCCTTGGAAGACTACGTCATCTTCAAACTTGACGTCG
AGGGAGCAGAGTACGACATCCTGGAGAAGATGGTCAAAGAAGGGACCTTC
AAGTGGATAGACAAGTTTTATGGCGAGTTCCACGACTCGTTCCCTATACC
AGGATGGTCAACACAAAGAAAACAAGGTCTTAGGAGTACTTTGAAGACCA
ATGGGATCAACATGCTTGACTGGGCAGGAGAGTACAAAAGATATGAAGAC
ATGGAAGCCATTCACAAGGTTGACATCCCAGCTGGTACCCCTGGAACTGC
TGGCGTGGCCTACTCCAGCTGTTCTCCCGGTAGTCCTGCCCGCCTGGCCC
TGACGGTGCAGGTCGGGATGAACAGGAAGGCGGCCCACAAGCTAGTGGAG
ACCATCCGGGCGCACCCCAGCAACATGCCGGTCACGCTCTTCGTCTACGG
GGACTTCGTGCAGGACTCCCCGGACCTGATCACCAAGTGGGCCGACAGAT
ATACGATAGGAATACGAGAGAATGCGCCCTTTCCAGCAGACCACTGGGTC
CTACAGAACGCCGACGTGATGAGGATGAGTCTGATATCGGCCGTGCAGCG
GATGAAGGAAGTGGGGGTGCGGCCAGCCTATTACTATCCGGACGGCCTGT
CGCAACGGGTTCAGGATACAGCAAAGAGCAGAGGACTGAGGCTCATTCAG
CCGACAACCAAGTTCCCTCCAAACCTTGGTACGTTGTTGAGGGAGGATAA
CTACTATCGGTTCAGAGACGTGGAGAGGACACCTAAGGCGCTCCGGATCC
TGTATGAACGCATCTCGAAAGGAGGGATTCTCAGTCTGGACACTGACCAC
CCAGACAGCTACATGATCTCAGCTTTCCTCATGGACTACCTGTACGAAAA
CTCCGGCTTTCAACTTGTCAATGTGAACGACTGTTTGAACTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062542BlTCONS00062542-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062542-exon-Sc0000049-1564993656:1669670..1669863BlTCONS00062542-exon-Sc0000049-1564993656:1669670..1669863Branchiostoma lanceolatumexon
BlTCONS00062542-exon-Sc0000049-1564993656:1669367..1669537BlTCONS00062542-exon-Sc0000049-1564993656:1669367..1669537Branchiostoma lanceolatumexon
BlTCONS00062542-exon-Sc0000049-1564993656:1667645..1667844BlTCONS00062542-exon-Sc0000049-1564993656:1667645..1667844Branchiostoma lanceolatumexon
BlTCONS00062542-exon-Sc0000049-1564993656:1667187..1667358BlTCONS00062542-exon-Sc0000049-1564993656:1667187..1667358Branchiostoma lanceolatumexon
BlTCONS00062542-exon-Sc0000049-1564993656:1666372..1666507BlTCONS00062542-exon-Sc0000049-1564993656:1666372..1666507Branchiostoma lanceolatumexon
BlTCONS00062542-exon-Sc0000049-1564993656:1665556..1665750BlTCONS00062542-exon-Sc0000049-1564993656:1665556..1665750Branchiostoma lanceolatumexon
BlTCONS00062542-exon-Sc0000049-1564993656:1665047..1665146BlTCONS00062542-exon-Sc0000049-1564993656:1665047..1665146Branchiostoma lanceolatumexon
BlTCONS00062542-exon-Sc0000049-1564993656:1664281..1664440BlTCONS00062542-exon-Sc0000049-1564993656:1664281..1664440Branchiostoma lanceolatumexon
BlTCONS00062542-exon-Sc0000049-1564993656:1663443..1663688BlTCONS00062542-exon-Sc0000049-1564993656:1663443..1663688Branchiostoma lanceolatumexon
BlTCONS00062542-exon-Sc0000049-1564993656:1662624..1662831BlTCONS00062542-exon-Sc0000049-1564993656:1662624..1662831Branchiostoma lanceolatumexon
BlTCONS00062542-exon-Sc0000049-1564993656:1661571..1662343BlTCONS00062542-exon-Sc0000049-1564993656:1661571..1662343Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000049genomeSc0000049:1661571..1669863 -
Properties
Property NameValue
GeneIDBlCUFF030745