|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000049:1643395..1651300- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >BlTCONS00062533 ID=BlTCONS00062533|Name=BlTCONS00062533|organism=Branchiostoma lanceolatum|type=mRNA|length=7906bp|location=Sequence derived from alignment at Sc0000049:1643395..1651300- (Branchiostoma lanceolatum)
CAAATCGTTTTGTTGTCGTCGTGAACCTGGTGAATTATAGACGCCAGTTT
CAGTGTCAAAAGCTAGCTTCGCGACAGTTTCGTAGAAAGACCGGATGTGA
GGTTACCGTGCGTGACGTCACTTGACCTTTATCCCGAGATGAAGAGACTA
TATACACTCAACACAAAAGGTTCGGAAACTTGGACTTGATCAGTCATACT
CCCTTTCTTACTCTATGAATTGTATTTTATCATATATCATAAATTAATTC
ATATATAATTGGAAAGCCTATTCATTGCTCTTTGCAATGATACCGCCTTG
CTATGGTTCATGGGTAAGAAAGAGAACCAGGACTACTTTCGTGAGTACAT
CAGTCACGAAAAATGATCATATGTTCGTTGTTTTCGGGTCCAATATGCCA
TTGGCCGGCCGACTCTGGCTTACTATTCACTCTATTCTCTATTTGGTCAA
TTTCTACAATTTTTTTCAGCGATCCGCGAAGCCTGGTAGAGGCTAGCAAA
GGCTTACCACTAAACTGTACCGTGTAGCTGCAACTGTGGAATTGTAAGCG
TAATAACAATGTTTAACACCAGCATTTCATTTTCCCACTCTGGCACCAGA
ATTCTTAAGTCATTAACCTTTCTGCCTTCCTTCGTCAGACATACCGTTTT
GGCCCACTCAAGTGCTAGAAAAATACACACACCTGTCGGTGTAATAACCT
TACTAGGAAATAGGCATTCAGTGTAGTAACCTAGTAGGAAATAGGCATTC
AGTGTAATAACCTTACTAGGAAATGGGCATAAATAATGGCGAACCTTACA
GTCTGTGCCTATGTGGGGGTTGTTGCTTGGGAGTGTAGACGTGTGCGAAC
GTGATGGTTGAGTAACATCTATAGCTTTGTTTAGTTTAGGTTTCTCTTTG
CAATTGAAAGAACGTGCATGCAGTGCGTTTCTACATTTTTGTACGTCCTA
CGTACGTGTATACAGACGTGAAGCCAAGTTCCACCCCGCCAGACTAGTTT
TGCTTCGTCGGTTAGTGCGTGTGTATCCTATAAATTAGAGTGGGGGTTGG
GGTATGGGCACAGCAGGACCCATATAGGGCGAGGATAGGGGCTACGGGGT
TAGGGCTAGGGTTGGCCTCTACAGCGTGACCCCCGTCCCACCACCCGCAT
AGACTTCTGCTTGAAAAATTACCACGCCCACGAGAGTGATGCACTTCTCT
CATTTCATTCATAATGGAAGCACCCGAGCATTTCTGAGTCAAATCGGCAG
TGGCAGAAATTTGGCTTGACACTGAGACACACTACCTGCTACAAACATGT
GCAAACAGTGTAATCGTCGTGGTAATCTACGACTCCGCCCCCCTCTCCCT
CTCCCTTAATTTCTGAATCGTGGCATAGATTATTCATTATTTTGTCAAGC
GTAGTGCAGGCCAAACCTAAATCATGTTTATTATGTCGTGACGCAATCTA
TGTACCTCGTCACCATGCCAAACAAAACATGGCGGATTAGCACTGAGTCA
AAACACTCCATGATGACGTAAGTGACTGTCTCGCCCCCACTTCCGGCCTA
GTGGTCACAAGACGCGTCTTGTTGCCCGGTCGGTCATTTTGAGATAGTAA
CTTTATAATCTCAACATCCTCGACAGAGTCTACATTTCCAGAAAGTCGTG
GATTTCCGTGGAAATACGTCGGATGGACAGTTCTTCGAAGCCAGATTGGG
TAAGCTTTGTGGGGAAAATATTCCATCCTTTTTTATGATAACTTAGGGGG
CGTTCTACTTCTAGTATGACATGTTTGGCTTAGCTATTAGCAAGGAGGTT
TAGTTTCCTTGCTATAAGTAACGTTTAAGGGAAAGAGTTGTTTTCAACTT
TGACCCACGTTTGTGCAGTCTGGCTATCGAACCGATAAAAACGTTGTACT
CGGTTGTAAACTTTACTTATGAGACAAAAATGTAAATACGCAACTCATAC
GCTCGGACTTGCATATAGGCACGAATGTGAACTCGGTGTGGAAAGTCCGC
CGATATAGAACGTTAAGTACTCATGATTCATGATTTATCGGTATCTAGTT
AAATCATAAGAAAGACATTGCTGCCATGCCATTGTGACTCGGGAGTTTGT
GATGCACAAGCGTTACCGTCACGCTGAGACCATTCAATACACAGAAATAC
CGTTAGACCTAGCTGTCAATCAAACTATGGGTTGGGAGGAAGTACATGAG
CTAACTAAGGTATATCGCGAAGGGCCAACAAAGGTTTTGGTAGAGCGTCA
CAAAATGATAAGTCAACAGCTAAAACTTTCCCTAAATAATGGGTCAAATC
TTTAGTTTCTTTCATTTATGTACCGACTGCGCTGCGCTATGTGTAGCGAC
TTTCCGGTTCAGAATTTTCCAAGTGTCGCCATGATTGTTTCTTGTCAAAA
GCCTTTATGAGAGTTTCTCGGAAAGACCGGGTATGAGGATATCATGCGTG
ACGTCACGTGAACGTTGACCCGATGTGAAGCTGGGTAACTTGAACTTGAT
CAATCATAGGATGGGTTGGGAAGAAGCACGTTAATATTGCGTCCGAAGTG
CCAACAAATGTTTGGTCGAGCGTCACACAATGACTCAACAGTTAAAGCTT
TGTCTGCCAGTTAAACAGGTCAAATCTACAGTTTCTTGAACTTATGTACC
AACTTCCGAGGGGAAAACGCCGCACCATGCCATGTGGATAGCGATTTTCT
AGTTCTGATTCTCCATATAATATAACATGCACTATGACGTCATGTTGGGA
CAACACGATATTTGCATTCACACCACTCGCTTTGGAGAACACTCTTGGCC
CCTTGTCACGAGCTGACTGCACGGTCGTGAGGCTGTCACACCCAGTGATC
ATCAGGCTATCGTCAAGCCCAATAGTCCGTCAGCCAGGAATGTTTGTGGT
GTAAATATAAGAAGTTGTGTGGAGATAAGGGCTCCTTCCTGTACCAAGTA
AAGGTTCTGGTACTAGTGGATTGATTTTAAAAGATTCCAGAGTCGTGTGT
GACACCATGCATATTGTATACTACGGGCAACAGTCAGAGGTGCTGCTTTT
GTGGGTCGTCGCAAACGGTATGATATACAAGTGGCTCTTGCAACATCCGA
TTCGCAAAGTAATATCCCGCCAACCCGCACACCCCAGTTTATTTTAGGTT
TCAATTGGAGGCTACACACCCTCGACCATCACTCGATTTTTAGAGATCGG
CCGATGTTCGAAGGTCCATATTAAACGTCCTCGGNGTTCGCAGGTCCTAC
CATGGTCTATATATTAAACCTCCTCGGTCCGACCAAGCCCCGTCTTATGT
GTTAGGATAGATTTCGTAATAAGCTCGAGCCTCTGTCGATTCTGGCGACC
TTCTTTTGAACAACAAATACGACCGAAACTCGTCTATTGAGTGACAGGGA
TATAAAGACAATTGCTAACTAGTGTAAAGGTAGCCATTGTTCAAAACAGG
TACAGGTGAAACGCCTGTGTACATTAGTGATTATTAAAAGCAATCAATAG
GTAATTGATTTTGCAATCGTTTTTATGACTTGGTGATTTATCTCACAGCT
TATTGTCATCAGTTATAACGTTTGAGACTCCTTTAGACCATTCCGAATCC
AAAGGAAACCAGTCTATCTCTACATCATCATCATCATCATATCGGGCAGC
TTGCCCGGACTAGGGTTGCTCTTTCCCTCCAGGCAACACGGTCCGCTATA
AGTTGGTCTCTACAATAGTCCTAAACTACTCTCTACCCTACTTACTACGC
TGGTTATAGGGAGAACAATTTGCCAGGGGAGGTTGGCTACCAAAGGGTTT
GAGCGGTCTTTTTTTCCGAGGGCCAAGTGGGAAATATTAACCTTCCCGTG
CTCTCACTCTCCTGGTTAATTATTCCCTTTTTTTGTCGAATTCTGTGATC
CGTGCCCTTGTAGGAAGGCCTAGTGGATCCGGAGGCTAGTAATAAAACCG
ACTAGGCTTTAAATTCGCATCGTCTGCTTCCTTTTCGTTTTGTTACAAAG
ACGGCGTCTATTACCTTTGCCAAGAGATTATGTTTCCGGGGCTGTGTATC
TTCTGTCTGTTTGTTTGTTTGTGAACAGCTTTAACTCGTATGTTGTTGTT
TTTTAAACTCGTTCTAACATGCATTGTTCCGTTGTGTTGTGTTGTGTTGT
GTTCTTTTCTTCTTTGTTCCTCCGATCCTAGTCACCCTGTACACATACAT
CACATCTAATACAAACAACACGACTGAAAGAAATGTGTGGGCCCAACAAT
CTGTTTCCTTTCTATGTCGGCGTCCTTTTTGAAAACAACAAAGCTATTTT
CCATTTTGTTATGTTCTTCGTTTCTCATTTGTTCTTCATAGTCACCCTGT
ACTTTACATGTAATAAAACAGTATTTGAACAATATCAAAACAAATTTGTG
GAATTCCAAGGGGCTCAACACTAGTAAAGCGCGCACTTGCTATACAGACA
GTACTAGTAGCGAAGTTGATCGCGTTTTACACACAGAATACAAAGAGTTC
TGGGCCAAAAACATCGCTGTCATTCTTTCCTTCAAATTAGCAGTTTTTTT
CTGGAGGGCACGTCCGTTAAACGTACCAAACCTTTGTTCTCTTTTACCGC
AAGTGATCGGCAATTTTCTACGGTCGGGTTGCTTTCCTGTTGACTTCCTT
TGGCTACGTGACCAAAATGCAAAATTGCCTCAACGGTATGATTTTGATCA
TGATGAGAGGAGAAAACATTGCTACCATTTTATCTTTGTTGTCACATGAC
TGCATGAAATCCGTCCTTGTAGTTCGTGAAACTTAGACCCCGTTCACACT
CATTTTTTTCAATCGCGATTGAAGTATAATCGCGATTGAATCGATCCGAT
CGCGATTGATTTTTTCAGTGTGAACGCTCCCAATCGCGATTGGAACGATC
CAAAACGATCCAATCGCGATTGGATTGTAACTACCTCCGGAGGTAGTTTG
ATTGGATTAATCGCGATCGGATCCAATCCAATCCTATCAAATTTTGAGTG
TGAACACAACTACGATTCATTCCATCGCGATTCGTGGGGATTTCGGCCGG
TACAAGGGTAGGGTCGCAACTTATCACATAAGTAATGTACCAAGTACAAT
GTTTTCCCACCAATCGTCGCTTCATTCAAGCTCCCAGATTGCCCTGTCTA
CAGCACTTGTCGCGTTCATTACCCGTACTACAGCGAGGCCAATATACAAA
AGCCTTCGTCGTTCACGCCTTCTCGCGATCATAGCCCGCCGATTGCGTTC
CCTTCCACGGCTACAGAACATTCTCCAGAGGTACAAAATCATCAAGAGTT
GGGGGACTCCCGCCATTTTGTAGCAAGCGACGCCGAACCTTTGACCTCGT
GCTTCAATCGCGGTCGGATCACGGCGTACTTTAATCCACTTGGCGAAAAT
CAGTGTGAACGCAAAAGTTTATTTGCGTGCAATCGCGATCGGATCGAACA
ATCGCGATTATATTTCAATCGCGATTGAAAAAAAATGAGTGTGAACGGGG
TCATAGAAATACAAGGCGTTGGTATTGTTGTCTGAGTACGAAATGGTCAG
GAGGTCATTGTGTGCTCTTCCGTATACGTACGTTATCCTTAATCACAATG
ATCACCATATTTGAATAGAGGTAGTAATCCGTGTGGGATTGACGCTATCG
CTTGTGCTCAGGCTTCAGGGTTTATGAACGAAGAACAGATGCCGGGCCCT
TGACTTGTCAGGCCATTTGAGTATGCCCCATTGCGTCACGAGGCTGTTGG
CCCCGCCCATGAATGCTTGTCTGCCACGTTGACATGTTTGTAGAAGACTC
ATTAGGTGCCTACAGTCCGCCGGGTAAACACGAACAGACCGTTTCCTTCG
CTTTTATATTCTAGATGATTCTAGAGCTGGGCAGTAATCCGTAGGAGTAT
CAAAGGTAGGATTATGCAACTTAAAGCCTGCATCCTGAAACAAAGAATTT
TGGAGCACATCCTGTTTGGATATTAATGGCGGGGTATGAAGTATATTTTG
CAGACTAATACCAGGGTTTGATTTTGCCGGAAGCCATCTTGAGCAAAGGC
ACGACAGCTACACTGTAGATAAGGGATTTTAGTGTGAGAAAGTTTCCTGC
TTTGTTCTCAGTGCACTAACGTTTTTAAGCAATGTCATAGCTGTTCTACA
AATGGTTTAATTGTGTTTGTTAACTTTATTGTCCACCTATATGTAGACGA
ACTATTAAAGAAATCTACGATGTGGATTTTATTACTACGTAGTGTTTGTT
TATAGCGACGAGAGGGATTAGGCTTTAACCCATGAAGTCTTTTGTTTCCG
TAGTTTTCGCACGCAGCCCAGAGTAGAGAGAAGGGGGGGACGTGGACGGC
TTCCGCGGTTGTGTTGCTGCCGATACGCTCGTCCACTTCAATGGAGAAGC
GGCCTTTCGTGATCCTGCCAACAACCATGGCCTCTAAAAATGGCAACGGG
CAGCGTTCCGAAGAACTGAGAAGACGGCTGTGCAAACCGATCGGTTCTTC
CGTGAAAGGAGCCTGTAGCAGTACACATGAGAAGCTGCAACAGCAGTCGT
TCCTGTCACCCACCATTGTCGACGCCAGATCCATAACGCCGGAGGAATTC
AACAAGATGGCGGCTGTCGCCACCGGCAAAGTGACAAAAGGCAGCGACGT
GTCTTCGCCACGACAGTGCGAATTTCTCCAGGCGGGACAGGTATTTCTCA
CCCAGAATAATATGAATACTGGGTTTGCGTTTGCTAGCTCAGCTCCATTC
CTCACGAGCCATGTTCAACGCTACGAAAACCATCCACCAGAGGCCATTCA
ACAATCCCTGGCTTCACTGAAGAAGGGTCTTGTTGAGTACCTCTCTAGGG
CGAAAGCTGCAAAGGAGAAAGGTCTCACGGAGACAGAGAGAGCTAAATTT
GCCGAGACTGCAACAAAGCCCTTGGCCTTGAAACCTTGGCGAGGGAAGCC
ATTTGGCTGTTCAGCCAAAGGTACAGCTGTGCCCGCAGCCACAATCAAAC
CCCTACCATCAACGGCGAGAAACGACGACGTAGTTAAATACCATGTCGTA
TCACAACCACATCCCGGCCCCCGCACCATTCACAAAGTGCCTAACGCTGA
ACTGCCGGAGATAAAGCCAATTGATCTGTCACAGGCAGGTACATACAACA
GCTCAGACAACCAAGCATCACTCAAAGAGGAAATCAACGACCTGAAAGAA
AAGATTGTCGAAACTGAGAAAGGTCTTCAGAAGATTGGAAACAGGAAAAA
CGACGGTTTAGTTTCTGAGACGACTGATTTCTCACAACAAGAAGAACCGA
TTGATCTGACGGTTAGCAAGAAGTCTAGCCATGTTGCATCCGTGCCTTCT
TCTGCAACACAACTCCACAACAAACGGAAAGATTGCTCAGACAACATCAC
GGAGGGAAAGAGAAGCCTGCGTGCCTCGACCAAAACCAACACCTTAGCAA
CCAGGAACAGCCTCCTCCAAGATAAGAACAGGAAACGCAAAAGAAAACCC
AGTGTTCCATTCCATCGTTCTGGCGAGTTTGGGAAAGCTTCGGCAAACAA
CGGTCTTCGAATGATGTCTCCTGGCAAATCTGGCTGTCCTACTGTAGGAA
AACGCGGCCGTCTCGATGAAATGGTCCAAGCTCTATCCAAAAGATTAGAT
GATGCCTACATTCCCTCGTACGGAATCGAACATCGGTAGTTTTGGTCATT
CTCGTCGTGTATTTAAGTCTATTTATTTACTGCTTTCAGAAATAACAATT
TGTAATGCGACTTTTGATAACTTGATATGCATATATAATGTCTTGTTGAT
AACCTAATATGCATACTTATTATTTATAGTAAAGTTTTGATATTTCACCC
GTCACGATACCATTAGCGCTTCTGGTATCGGATGTTTGTTGAGAATTAAA
CTGCAC Coding sequence (CDS) from alignment at Sc0000049:1643395..1651300- >BlTCONS00062533 ID=BlTCONS00062533|Name=BlTCONS00062533|organism=Branchiostoma lanceolatum|type=CDS|length=1413bp|location=Sequence derived from alignment at Sc0000049:1643395..1651300- (Branchiostoma lanceolatum)
ATGGACAGTTCTTCGAAGCCAGATTGGTTTTCGCACGCAGCCCAGAGTAG
AGAGAAGGGGGGGACGTGGACGGCTTCCGCGGTTGTGTTGCTGCCGATAC
GCTCGTCCACTTCAATGGAGAAGCGGCCTTTCGTGATCCTGCCAACAACC
ATGGCCTCTAAAAATGGCAACGGGCAGCGTTCCGAAGAACTGAGAAGACG
GCTGTGCAAACCGATCGGTTCTTCCGTGAAAGGAGCCTGTAGCAGTACAC
ATGAGAAGCTGCAACAGCAGTCGTTCCTGTCACCCACCATTGTCGACGCC
AGATCCATAACGCCGGAGGAATTCAACAAGATGGCGGCTGTCGCCACCGG
CAAAGTGACAAAAGGCAGCGACGTGTCTTCGCCACGACAGTGCGAATTTC
TCCAGGCGGGACAGGTATTTCTCACCCAGAATAATATGAATACTGGGTTT
GCGTTTGCTAGCTCAGCTCCATTCCTCACGAGCCATGTTCAACGCTACGA
AAACCATCCACCAGAGGCCATTCAACAATCCCTGGCTTCACTGAAGAAGG
GTCTTGTTGAGTACCTCTCTAGGGCGAAAGCTGCAAAGGAGAAAGGTCTC
ACGGAGACAGAGAGAGCTAAATTTGCCGAGACTGCAACAAAGCCCTTGGC
CTTGAAACCTTGGCGAGGGAAGCCATTTGGCTGTTCAGCCAAAGGTACAG
CTGTGCCCGCAGCCACAATCAAACCCCTACCATCAACGGCGAGAAACGAC
GACGTAGTTAAATACCATGTCGTATCACAACCACATCCCGGCCCCCGCAC
CATTCACAAAGTGCCTAACGCTGAACTGCCGGAGATAAAGCCAATTGATC
TGTCACAGGCAGGTACATACAACAGCTCAGACAACCAAGCATCACTCAAA
GAGGAAATCAACGACCTGAAAGAAAAGATTGTCGAAACTGAGAAAGGTCT
TCAGAAGATTGGAAACAGGAAAAACGACGGTTTAGTTTCTGAGACGACTG
ATTTCTCACAACAAGAAGAACCGATTGATCTGACGGTTAGCAAGAAGTCT
AGCCATGTTGCATCCGTGCCTTCTTCTGCAACACAACTCCACAACAAACG
GAAAGATTGCTCAGACAACATCACGGAGGGAAAGAGAAGCCTGCGTGCCT
CGACCAAAACCAACACCTTAGCAACCAGGAACAGCCTCCTCCAAGATAAG
AACAGGAAACGCAAAAGAAAACCCAGTGTTCCATTCCATCGTTCTGGCGA
GTTTGGGAAAGCTTCGGCAAACAACGGTCTTCGAATGATGTCTCCTGGCA
AATCTGGCTGTCCTACTGTAGGAAAACGCGGCCGTCTCGATGAAATGGTC
CAAGCTCTATCCAAAAGATTAGATGATGCCTACATTCCCTCGTACGGAAT
CGAACATCGGTAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| BlTCONS00062533-exon-Sc0000049-1564993656:1651272..1651300 | BlTCONS00062533-exon-Sc0000049-1564993656:1651272..1651300 | Branchiostoma lanceolatum | exon |
| BlTCONS00062533-exon-Sc0000049-1564993656:1649602..1649674 | BlTCONS00062533-exon-Sc0000049-1564993656:1649602..1649674 | Branchiostoma lanceolatum | exon |
| BlTCONS00062533-exon-Sc0000049-1564993656:1643395..1644997 | BlTCONS00062533-exon-Sc0000049-1564993656:1643395..1644997 | Branchiostoma lanceolatum | exon |
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000049 | genome | Sc0000049:1643395..1651300 - |
Properties
| Property Name | Value |
|---|
| GeneID | BlCUFF030737 |
|
