BlTCONS00062342 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00062342
Unique NameBlTCONS00062342
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000049:619555..623368-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00062342 ID=BlTCONS00062342|Name=BlTCONS00062342|organism=Branchiostoma lanceolatum|type=mRNA|length=3814bp|location=Sequence derived from alignment at Sc0000049:619555..623368- (Branchiostoma lanceolatum)
AATGACTAAAGATGTTCACTCAACCAATCAGAGAGATCAGCTTGACTTTA
CCTGTCAAGGTGTATTCCTCTGACACATTCCAGTCTGTCAACGGTTTGGT
AAAGAACGATTCGACAAGACAGCTGAAACAAAGGTACCTAACTGTTCAGT
TTTGTGGGATTTGGGATATTCATCATAATTATATAAGTGTTAGCTGCATG
TTGTTTGTTAATACGAACGTGTAGGCGTAGCAGTTGTGTCAACTTGTCAG
ACAAGTTTTCTATGACTATTGTGGTATCGCCACCATTTTGGTCATATTGG
GGTATCGCCAAGAACACAAAGACTAAAGAGAAGAAAACAAGTACGTTTGA
CATTCAAGACATCATTTTCTATCGTTGGTGGTGTGATTTTGACTTACACG
TAATTCTCTGGAGGCCCGTGTCACTATAGTTTTGGCAATCAACTGGTTTG
AGATGTAGTCAAGAGTATGCGAGAGTATGCAGTCCCGAGTCTGTCTAGAA
ATGTTGGCTGTATTTAGGTGTCATATCAAATATTCGGGTCTATGCCGTTT
CAGAATTGGGCTTGTGGCTATAAGAAGAATTAAAGGCTACGGGATTATCC
CGTAGGCCACTGAAATTTCGAAAGGACAATATATAGTTGAAGAAAAGTCG
CGATTCGATGGAATGCAGCCCGTTCTTCCTCTCAATATTATATCAGATCC
AGACACATGGTCACAAGAACGGAGTGAACTAGTGACTGGCCTTTAATTCT
TCTTATAGCCCCAAGCCCAATTCTCTCGAAGTCGTATTTCATGTTAAACA
AGCCAATCGCTATAATCATGCTTTCCTAAAAGTTGCCTCAGGACGTCTTG
AAACATTGTTCGAATTCTTACCCTCCCTCCCTAAACGTACACACACAGAC
ATGGCTGACCAACTGTCAGAAGAACAGATCGCTGAGTTCAAGGAGGCCTT
CTCTTTGTTCGACAAGGATGGAGACGGTAGCATCACAACTACTGAGCTAG
GCACCGTCATGAAATCGTTGGGTCAGAATCCAACCGAAGCTGAGCTTCAG
GTGCGTCTTTCAACAGAGTTATGCCTTTGCTAACATTCATAGAAGTGTGC
ACACGATTGCATGCCGTACGGGTTTCTGTTGTTTTGTACTCAAAGCATAT
CAATGACAATGCAATCAAATCCCGCAAGCAAAAAGATCACGTTTACAACA
ACAAGCAAGCTTAAGCCTAAATCCAATGGGGTTTTCCAACGTGCCGAGGT
GAAGGTGGATTCTAAGATGAAACTGGCAGTACATAATGAATTTGGAAAAA
CATGGAATAAAGGCGATGGCCAATAGCTGATGGCTGAATACATATATATG
TGATAAAAGCCTAGGTTTAAGGTTAAGACGTATGAAAGTTAACTACAAAG
AGATGATTGTTAACCACAAAATTGCTTGTTAACGTTTGTAGGACATGATA
AGCGAGGTTGACGCGGACGGAAATGGAACCATAGATTTCTCAGAATTCCT
CACCATGATGGCTCGGAAGATGAAAGATACGGACACGGAAGAGGAGATTA
AAGAAGCGTTTCGGGTATTCGACAAGGTACTGATGTTGTTTTGACATGTT
TATTATAGCTGAGGTCCCATGAGCTGCAAGGGCAAGGGTGTTCATGATAA
GGTTGTGTTGTTATTTGATAGGAAGGTCGACTCGAGTGTTAAACCATTTT
ATTGTCATGATCTCTAACATATGAGACGCATGAGCATGATTTATATAATA
TATAATTATACTAAATTTGGTACATCCACTGTTCCCTTTGCGCTGCAGAA
AATATTAAGTTTTAGAGAAGCAAAATGATGGCGGCTATACGAAGATAGTC
CACGCTACACTAAGATGGACATTTTTTCAGCCTAAGATTTGGCCTAGCCT
GTGTTACACAATCTCTTGCTGCCAGGGGCTTATTGACCCTCTTCTCGGAG
GAGGGGGGGTCAGTACGTCAGGTGGACCGATATGAGTGCGATTTAGTCAG
GCTACAAGTTGGCCTTCCTCAGGTATATACTGGCCCACGAACGCCTGCCA
CGTGACTTTCCAGAAACGAAATGTTTGAAAGGTTGTGAGTGTGTCAACAT
ATATATATAACTGAGAACGCAGACACAGGATTGGTATGTGAGGTAACATC
TTTGTGTTGAGATTTTTTGTTTCCTTTCCCGCCCAAATCACAGGATGGCA
ACGGGTTCATCAGCGCTGCGGAGCTGCGTCACGTGATGGCCAACCTGGGA
GAGAAGCTGACAGATGCAGAGGTGGATGAGATGATCCGAGAGGCCGACAC
TGATGGAGATGGCCAGGTTAGACCCTTTAGTAGACCTCATGATCAACCCA
GCTTCTTATGAACTCAACGATCTCCTAGAAGAGCAAAAACGTTATTGAAC
GCATGTGGACAGGTTAACAACAGTACTACATATTCGTTCAGACCCTTGTA
GCGTGGCTAGTGGCACATGGAGTAGTAAGTTTCCTTGCTGTTCGTGTAGC
AGGGTGTATTTTTGGTGGGGTCGTTAGCCTTTCCCTTAAGAATTAAACAT
AATTCAATTAACAGTCACAGATGGAAATGATGTGATGATTCTGTAATAGT
AAGCAGAGTGCCTGGGAAAAATAATATCACCTCTGATTTTTTCGTTCGTG
TTCTCTCCATAGGTCAACTTCGAAGAGTTCGTGAGGATGATGATGTCCAA
ATAAAAAAAAAGCCAACTTTCTGTCAACCAGTTCCTGGGTTCAATTAGAT
TATACTAACCATATCAACTAGATCACATAGTAGTTGTGGGTAATCACTGT
AGTAATAAAGAGGTTTACGATTCTAAGTAGGCATTGAAAGGCATTGTGGG
TAATATGTCAAAGGTGAGGGTCCCTAACTTGTAAACAGTTCTTGTCTCGA
ACATTTGTTCTATTTTCACAACGATGTCCAGACGTTTTCGTTTTATGTCC
CATGGGCCTTCACCTTTGACATATTACCCACAATGCATTTCACTGCGCAT
GCATACTTAGAATCATGAACCTCCTTATTGCCACGGTGAACATGCTACCG
CATTTTCGTTCATTGAAGTGTTCGCCAATGAGCCTTGATTCCTTTCCCAT
AACCAGTGTTCAGGCAGGTGTTAAATTGTTAAACGCAGGCAGCTGCTATG
TACTTTGCCAAATAATGGAACAAAGATCTGTTTTCCCCGTTCAATCAGGA
TACTATTGTTTATTTCATTATAATGTGAACATCATCATTTTCTTAGCTCA
AATAAAATTGTAAGAACTCGAGAATGCTGTCCATTCATAATTTACTTGGG
TGTAGATTGCTTAATAGGTTCTGATACAAAAGAAATCTAAATTTTCCAAA
CCAAAGTAACTTATGTACAGTGGTGGGCATGGCATGATTTGGATTTTAAG
CTTTCAAATGTGGTGATAGGACAGGACACATAGCGATACTTTTGCAAAGT
GCAGTTGCGGCCGTTGTACAGTCATTCGAGAAATGGCACACAACTACATA
TGGACTATTTTACTTGGACATTCAAGGGCCATTTTTACCGTCACAATACA
ATATCTACACCACTTGATTTGAGACAAAAGTGGAACACAATAATGACAAT
GTTTATGATAACGAGTGTTGAAATCCAGGATCGAATATCGGAATATCACA
TCTTATAAAAAGAAACGAACCTGGTACATAAAGTGGGGCAGTCCAGCCAT
TTGGTTTATCACACAACAGTCTTAAGTACAGGTACCTGTTTTTTTTTTCA
GTCAGCGATTTATCTAATGTCTATCTACAGTGGCCTTAGGGGCTAAGGGT
TCTGTGATTGTCAC

Coding sequence (CDS) from alignment at Sc0000049:619555..623368-

>BlTCONS00062342 ID=BlTCONS00062342|Name=BlTCONS00062342|organism=Branchiostoma lanceolatum|type=CDS|length=450bp|location=Sequence derived from alignment at Sc0000049:619555..623368- (Branchiostoma lanceolatum)
ATGGCTGACCAACTGTCAGAAGAACAGATCGCTGAGTTCAAGGAGGCCTT
CTCTTTGTTCGACAAGGATGGAGACGGTAGCATCACAACTACTGAGCTAG
GCACCGTCATGAAATCGTTGGGTCAGAATCCAACCGAAGCTGAGCTTCAG
GACATGATAAGCGAGGTTGACGCGGACGGAAATGGAACCATAGATTTCTC
AGAATTCCTCACCATGATGGCTCGGAAGATGAAAGATACGGACACGGAAG
AGGAGATTAAAGAAGCGTTTCGGGTATTCGACAAGGATGGCAACGGGTTC
ATCAGCGCTGCGGAGCTGCGTCACGTGATGGCCAACCTGGGAGAGAAGCT
GACAGATGCAGAGGTGGATGAGATGATCCGAGAGGCCGACACTGATGGAG
ATGGCCAGGTCAACTTCGAAGAGTTCGTGAGGATGATGATGTCCAAATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062342BlTCONS00062342-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062342-exon-Sc0000049-1564993656:623236..623368BlTCONS00062342-exon-Sc0000049-1564993656:623236..623368Branchiostoma lanceolatumexon
BlTCONS00062342-exon-Sc0000049-1564993656:622319..622470BlTCONS00062342-exon-Sc0000049-1564993656:622319..622470Branchiostoma lanceolatumexon
BlTCONS00062342-exon-Sc0000049-1564993656:621793..621927BlTCONS00062342-exon-Sc0000049-1564993656:621793..621927Branchiostoma lanceolatumexon
BlTCONS00062342-exon-Sc0000049-1564993656:621053..621175BlTCONS00062342-exon-Sc0000049-1564993656:621053..621175Branchiostoma lanceolatumexon
BlTCONS00062342-exon-Sc0000049-1564993656:619555..620706BlTCONS00062342-exon-Sc0000049-1564993656:619555..620706Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000049genomeSc0000049:619555..623368 -
Properties
Property NameValue
GeneIDBlCUFF030680