|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000049:614901..623381- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >BlTCONS00062340 ID=BlTCONS00062340|Name=BlTCONS00062340|organism=Branchiostoma lanceolatum|type=mRNA|length=8481bp|location=Sequence derived from alignment at Sc0000049:614901..623381- (Branchiostoma lanceolatum)
CAGGGCATGACGCAATGACTAAAGATGTTCACTCAACCAATCAGAGAGAT
CAGCTTGACTTTACCTGTCAAGGTGTATTCCTCTGACACATTCCAGTCTG
TCAACGGTTTGGTAAAGAACGATTCGACAAGACAGCTGAAACAAAGGTAC
CTAACTGTTCAGTTTTGTGGGATTTGGGATATTCATCATAATTATATAAG
TGTTAGCTGCATGTTGTTTGTTAATACGAACGTGTAGGCGTAGCAGTTGT
GTCAACTTGTCAGACAAGTTTTCTATGACTATTGTGGTATCGCCACCATT
TTGGTCATATTGGGGTATCGCCAAGAACACAAAGACTAAAGAGAAGAAAA
CAAGTACGTTTGACATTCAAGACATCATTTTCTATCGTTGGTGGTGTGAT
TTTGACTTACACGTAATTCTCTGGAGGCCCGTGTCACTATAGTTTTGGCA
ATCAACTGGTTTGAGATGTAGTCAAGAGTATGCGAGAGTATGCAGTCCCG
AGTCTGTCTAGAAATGTTGGCTGTATTTAGGTGTCATATCAAATATTCGG
GTCTATGCCGTTTCAGAATTGGGCTTGTGGCTATAAGAAGAATTAAAGGC
TACGGGATTATCCCGTAGGCCACTGAAATTTCGAAAGGACAATATATAGT
TGAAGAAAAGTCGCGATTCGATGGAATGCAGCCCGTTCTTCCTCTCAATA
TTATATCAGATCCAGACACATGGTCACAAGAACGGAGTGAACTAGTGACT
GGCCTTTAATTCTTCTTATAGCCCCAAGCCCAATTCTCTCGAAGTCGTAT
TTCATGTTAAACAAGCCAATCGCTATAATCATGCTTTCCTAAAAGTTGCC
TCAGGACGTCTTGAAACATTGTTCGAATTCTTACCCTCCCTCCCTAAACG
TACACACACAGACATGGCTGACCAACTGTCAGAAGAACAGATCGCTGAGT
TCAAGGAGGCCTTCTCTTTGTTCGACAAGGATGGAGACGGTAGCATCACA
ACTACTGAGCTAGGCACCGTCATGAAATCGTTGGGTCAGAATCCAACCGA
AGCTGAGCTTCAGGTGCGTCTTTCAACAGAGTTATGCCTTTGCTAACATT
CATAGAAGTGTGCACACGATTGCATGCCGTACGGGTTTCTGTTGTTTTGT
ACTCAAAGCATATCAATGACAATGCAATCAAATCCCGCAAGCAAAAAGAT
CACGTTTACAACAACAAGCAAGCTTAAGCCTAAATCCAATGGGGTTTTCC
AACGTGCCGAGGTGAAGGTGGATTCTAAGATGAAACTGGCAGTACATAAT
GAATTTGGAAAAACATGGAATAAAGGCGATGGCCAATAGCTGATGGCTGA
ATACATATATATGTGATAAAAGCCTAGGTTTAAGGTTAAGACGTATGAAA
GTTAACTACAAAGAGATGATTGTTAACCACAAAATTGCTTGTTAACGTTT
GTAGGACATGATAAGCGAGGTTGACGCGGACGGAAATGGAACCATAGATT
TCTCAGAATTCCTCACCATGATGGCTCGGAAGATGAAAGATACGGACACG
GAAGAGGAGATTAAAGAAGCGTTTCGGGTATTCGACAAGGTACTGATGTT
GTTTTGACATGTTTATTATAGCTGAGGTCCCATGAGCTGCAAGGGCAAGG
GTGTTCATGATAAGGTTGTGTTGTTATTTGATAGGAAGGTCGACTCGAGT
GTTAAACCATTTTATTGTCATGATCTCTAACATATGAGACGCATGAGCAT
GATTTATATAATATATAATTATACTAAATTTGGTACATCCACTGTTCCCT
TTGCGCTGCAGAAAATATTAAGTTTTAGAGAAGCAAAATGATGGCGGCTA
TACGAAGATAGTCCACGCTACACTAAGATGGACATTTTTTCAGCCTAAGA
TTTGGCCTAGCCTGTGTTACACAATCTCTTGCTGCCAGGGGCTTATTGAC
CCTCTTCTCGGAGGAGGGGGGGTCAGTACGTCAGGTGGACCGATATGAGT
GCGATTTAGTCAGGCTACAAGTTGGCCTTCCTCAGGTATATACTGGCCCA
CGAACGCCTGCCACGTGACTTTCCAGAAACGAAATGTTTGAAAGGTTGTG
AGTGTGTCAACATATATATATAACTGAGAACGCAGACACAGGATTGGTAT
GTGAGGTAACATCTTTGTGTTGAGATTTTTTGTTTCCTTTCCCGCCCAAA
TCACAGGATGGCAACGGGTTCATCAGCGCTGCGGAGCTGCGTCACGTGAT
GGCCAACCTGGGAGAGAAGCTGACAGATGCAGAGGTGGATGAGATGATCC
GAGAGGCCGACACTGATGGAGATGGCCAGGTTAGACCCTTTAGTAGACCT
CATGATCAACCCAGCTTCTTATGAACTCAACGATCTCCTAGAAGAGCAAA
AACGTTATTGAACGCATGTGGACAGGTTAACAACAGTACTACATATTCGT
TCAGACCCTTGTAGCGTGGCTAGTGGCACATGGAGTAGTAAGTTTCCTTG
CTGTTCGTGTAGCAGGGTGTATTTTTGGTGGGGTCGTTAGCCTTTCCCTT
AAGAATTAAACATAATTCAATTAACAGTCACAGATGGAAATGATGTGATG
ATTCTGTAATAGTAAGCAGAGTGCCTGGGAAAAATAATATCACCTCTGAT
TTTTTCGTTCGTGTTCTCTCCATAGGTCAACTTCGAAGAGTTCGTGAGGA
TGATGATGTCCAAATAAAAAAAAAGCCAACTTTCTGTCAACCAGTTCCTG
GGTTCAATTAGATTATACTAACCATATCAACTAGATCACATAGTAGTTGT
GGGTAATCACTGTAGTAATAAAGAGGTTTACGATTCTAAGTAGGCATTGA
AAGGCATTGTGGGTAATATGTCAAAGGTGAGGGTCCCTAACTTGTAAACA
GTTCTTGTCTCGAACATTTGTTCTATTTTCACAACGATGTCCAGACGTTT
TCGTTTTATGTCCCATGGGCCTTCACCTTTGACATATTACCCACAATGCA
TTTCACTGCGCATGCATACTTAGAATCATGAACCTCCTTATTGCCACGGT
GAACATGCTACCGCATTTTCGTTCATTGAAGTGTTCGCCAATGAGCCTTG
ATTCCTTTCCCATAACCAGTGTTCAGGCAGGTGTTAAATTGTTAAACGCA
GGCAGCTGCTATGTACTTTGCCAAATAATGGAACAAAGATCTGTTTTCCC
CGTTCAATCAGGATACTATTGTTTATTTCATTATAATGTGAACATCATCA
TTTTCTTAGCTCAAATAAAATTGTAAGAACTCGAGAATGCTGTCCATTCA
TAATTTACTTGGGTGTAGATTGCTTAATAGGTTCTGATACAAAAGAAATC
TAAATTTTCCAAACCAAAGTAACTTATGTACAGTGGTGGGCATGGCATGA
TTTGGATTTTAAGCTTTCAAATGTGGTGATAGGACAGGACACATAGCGAT
ACTTTTGCAAAGTGCAGTTGCGGCCGTTGTACAGTCATTCGAGAAATGGC
ACACAACTACATATGGACTATTTTACTTGGACATTCAAGGGCCATTTTTA
CCGTCACAATACAATATCTACACCACTTGATTTGAGACAAAAGTGGAACA
CAATAATGACAATGTTTATGATAACGAGTGTTGAAATCCAGGATCGAATA
TCGGAATATCACATCTTATAAAAAGAAACGAACCTGGTACATAAAGTGGG
GCAGTCCAGCCATTTGGTTTATCACACAACAGTCTTAAGTACAGGTACCT
GTTTTTTTTTTCAGTCAGCGATTTATCTAATGTCTATCTACAGTGGCCTT
AGGGGCTAAGGGTTCTGTGATTGTCACAGATTGAGGGCACAACAACCGTG
GCTGTACATGTACTTGTATAGTGTAACATTAAGCTGCATTGGGACTAGTA
AATAATGTACTGAGGCCAGGCTTGATTTGGTCAAAGATTTATCCAATGTT
GACCTACAGTTCTTTCGCATTTTTTTACAAATTGAGTACACTCTTCTGGC
AATCGCGGCCGTGCGGTGCAAAATCAAGCTGCCTTGTGACAGATGAGTAC
AACAAAAAGGACAGTAGTGCGACGGATGCCCCTGTGCCTTTTGGTTTAGG
CCAGGATGACATCTGTATATCCCAGAACACGAATGTAACCAATGTCTGTA
AAAAATCAGATTTTCAGTTGGGAACTCACTAAATAGGTCATATCAGGAAA
CGTTACCTCATCATGCCCCAAGTCACCTTTGATTTCGCACTGTAGGATTT
ACTTTCAGCAAATCGTATGGGACAGGTATTTACTAGAGAAGAAAGAGCAA
ACAGCCCTAACTACGAAATGATTAAACCGTTCATGTGTCGGACACAATAC
CGCCATTTGCATAACGAGTACTAAGAAGGTCCTCGTCTGTTGTCGATCCA
GTTTTTCTGCGTTGTTATCAGATGCTTGCTTATCCTCCATTACTGCATTC
GTACAAAACGCGCTGTACTGGCTGATGAGCTCAACCTTGCCCTCTGTCCA
GTTTTCTTTTAAGCTTACCAAGACGTTTTTTAGTTCGTCATCTGAAGGGA
AGACGGTAGGTTCTCATTCTTACTACAGCAGTCTCGAGCATAGGGTTGTC
GTAGATTGCCGTGTTGTTGGTATCGTCAAAAGCAGGTACACGTAGGAGAT
ATATTTGCTTCACCGATTGGGTTTAAGAATTAGTCTTCCTAAAATATATC
AATATTTCTGAATTTCCTAAACTTTGCCACCTCATTTTCGTTCCTTCTAC
TTTATATAGTAATGCATCCAACAAAGCTGATTGGTCTCCTAAACCTGTGC
CCATTCATACAAATTGACAAGGATGGCGGTGGTACACTAACAGCTCAGGA
GATCATCGACTACTTGGATTCTCAAGGCTGCAAACTAGCTGAGAATGAGA
AGCAGGTAACGTTACACGTACTATCTTTGTCAAGTGCTGCTTCTGTCGAT
ATCAAGATCTTCACAGATGAAGTTAGAAGTTAAGTAAATGTGTGAAAATG
TAGACAAAAATGATGTAAAGGTACGCCGGTAACCCAGCTAAAAGCCCTCG
AGGTAGGAGCAGGAATGTATGGAATGTAAATGATGATGATGACTGCGCCA
TTTTATGTAACAATAGCAACATGACGCCACCTTGACAGGCCGTTCAGTGT
AATATAACCAGCTGCTGCAGCGCCGCGTGCCTGCGAAGCTGGTGTGTTAC
GCCGAAGGGCGGTTATACCGGATATACAGATATAGATACAGTTCTTCTTC
AGGAGATCCGTCGCTGGGTGAATATTGTTGACAGGAGCGGAGATGGTGCC
GTGGGTACCCAAGAATTTATCGCCTTCATGAAAAAGATGCAAGTTTTCCG
GAAGTATGACAAGGCAAGGGTGTTTTGTTAACTTTTAAATTACCAATGGG
TTGTCAAAACAAAAGGTTGTAACATGAGAAGTGGTACGGGGCAGTGTGGT
CAACATGAAATTCTGCTTGTTTTCCTTTTGCAGCCAGTTTTGTTAGAAAC
ACAAGTCCTTACAAAACAAGCTATGTGTTGTGTTTTTGTCTGAAATATCT
TCCCAACCGACAATGACAGGATCGTACCGGCTTCATCACGAAGGATGAAA
TACAACAGGGCGTGTCCGAAATGGGCGCGGGGGTAGAGATGGAGGAGATG
CTGATGAAATGTGACACTAACGGGGATGGAAAGGTTAGCAAGCAACTGTT
ATCATTCGCAGTATTTGCACTTGGCTCCCTCAAACAACTACATTTATGTG
TGTATGGTGGTAATATGTAACCCGTTTGCCACCCAGCTGACAACAACTTG
TTATGCTCCTCTCTGCAGTTATGTATTATCATTTGTATCAATTTCGTTTG
TTTCTACCCAATATTGACTTATATTAATTCCATCGTTTATATGATTTTGA
CTAGACTTCAAGCATTGGTATTTGTGTATTTGAAATCTGCGTTTTAATAA
GTACTTTTAGCACTCGGTGCTGCCGATGTGCCAACCTTTCAAAGGTGAAA
AAAGTTCAAAGATCATAGGCTCATAAACTTAATACCCCCCTCCCCATCCA
AATTTACTGTAACTGTGGGCACTAATAAGCAAATATGGGAAACTGCTCAA
TGCTCAGCTCTTGTTGGCAGATATCTATCCATTAAAGAAAAAATAAAACA
AGTATTGATAGTGATTGGAATATTGGAAGTTGTATATTCAATTTGGCTAG
TTGAAAATAGAGTTTGATACCTTGTCCTTGTATTTGGCGTGCCTGTGTAT
GTGTGTGTGTGTTTGTGTGCGCGGTGGATGTTTTTGCGTCAGGATATTCT
AGTCAGCATCACCTCAGAACCTCTGGAAGGACTTTGAGGATATTTGGTAT
GTGGGTCGATTTTAGGAAGACGAAGGGCAAGATTAATTATGGGTCCCCTA
GCGGCTTTCCTTGGTTCGACGAAAATCGCTAAACTTTTTGTTGGGTGAAT
GAAACTTCTATTAATTCATATTCAACTACCCTGTACCCCCTTCCTGTTGT
AGATCAACTACGAAGAGTTCATTCTACTTCTTCTGGCAATGGATCCCAAA
CTGTCAGGTCTACCGGAGGAAATAGACCCGCACGAACAGGTTAGACTATT
CTTGCAAAGTGACAAGGATCACAGCGGAACAGTCACCGCTCAGGAGATCA
TCGACTTCTTGGATTCTGTCGGCTTGAAGCAAGCTGAGAATGAGAAGCAG
GTACATGTGCTATCTTTGTCACTGGTTCTGTCGATATCAAGCTCTTCACA
GATAAAATTAAGTAAATGGGCGAAAATGTAGACAAAAAAATGTAAAGGAA
CGCCGGTAACCCAGCTAAAAGCCTTCGAGGTAGGAGCAGGAATGTATGGA
ATGGAAATGACGATGACTGCGCCATTTTGTGTCACATGAGCGCGCGTAGA
TGGAATTAGCTAGAAGCACAAGTTACAAAACAGAACCCTCATTAAATCAG
GACCCCTATCGTACTCTCCAAGCAGAGGAGTGGGCCCGGCAGGTTTTTGG
CGTGTTTTAGGCGTTTTTGTCGGGCTTATATTACACCGAACGGTCTGTCT
ACTTTGTCATGGTATCTTTCTATCTTTAACCCACAGTGGGTTAAAGATAG
AAATATACCATGACAAAGTAGAAAGCCCGACAAAAACGCCTAAAACACGC
CAAAAACCTGCCGGACCCACTCCTCTGCTTGGAGAGTACCCTATCGCTCC
ACGTTACATCGCCCCTTTCGCGAGCGATGTAACGTGGAGCGATAGGGGTC
CTGATTTAATGAGGGTGCAAAATAGCAGTCGTAACATGCTGCCATCCTCT
CCAGGAGATCCGTCGCTGGGTAAAGATTGTTGACAAGAACGGAGACGGAG
ACGGAGCCGTGTGTGCCGATGAATACCTCAACCTGATGGGAAAGATTCAA
TATATGAAGATGCACTTTGACAAGGCAAGGGTGTACTGTTTTCAACTACT
ATTGGTCTGTCAGGAGAAAGTTATAATATAAGATTATGGTATTGGGCAGT
GCGGTCAACATAAACTTCTGCTTGTTTTTGTTTTGCAGCCATGCAGTATT
GTCACAAACATAAGTACATTGTAGAACAAGCTATGTGGTTTTCTTTGTTT
TCTTTGTCTGAAATATCTTCCCCACCAATAAATACAGGATGGTAGTGGCT
TCATCACCCGGGATGAACTACGCCAGGTAATGATGGGCTATGAAGATTCG
GCAGAAATAGAGGAGTTAGTGATGGCATGTGACGCTAACGGAGATGGAAA
GGTTAGGCTTATAAACTTTCAAAATACCCTCCTCCTCATCGAGATTTACT
GTAACGTTAACCGAGGCTACTAAACAATTAATTATGACAAATTAGTGAAT
GCTGCTCTTCTTGGTAGTTGTCCATTCACGAAGGAAAATATCCCAGGAAT
TGATGGTGTTTGGAACTTAGTGTATCATATTTGGCTAGTTGAAAATGGAG
TTTGATGCATTGGCCCAACTTTTCAAACGGACATGACTCGTTTCCTCCAC
GAAAAACGGAGGTATGGTCTTTGATGTGCCTGTGTATCATTATCATCATC
ATGTGCCTGTGTATGCGTGTGTCTGTGCGTCTGTGTTTTGGACATTTGTG
GTCACTATAACGGCAGCATTCCTTGGTACTGCAGCAGAACGTCCCAGGAA
GTTTGCAAGTTTAAAAAGCTTTTAAAAATATGACTTTGTTATCAGAAAAA
GATACTGAAATACACGGTTAGCCCCTCCTGACTGTATCAAGATATCAGAG
ATCTAGCAAGTTTGCGGTTTAGTTTGTATTTTCTTTTTTTGTAGTTTTTG
TTGACTGACTCGTACTTTTTGTTGTCAATAAAGCTTCTATAAATCAACAA
CTAATCACTCTTTTCCTCTTTCCCGCTAGGTCAACTACGAGGAGTTCTTG
GAGAACTTTCATAATTAGAATCACGAAAAGGAAGACTGAGAGTAGCCCTG
CATTCGTCAGAGGATTTTTTTTAGTTCANGG Coding sequence (CDS) from alignment at Sc0000049:614901..623381- >BlTCONS00062340 ID=BlTCONS00062340|Name=BlTCONS00062340|organism=Branchiostoma lanceolatum|type=CDS|length=873bp|location=Sequence derived from alignment at Sc0000049:614901..623381- (Branchiostoma lanceolatum)
ATGCATCCAACAAAGCTGATTGGTCTCCTAAACCTGTGCCCATTCATACA
AATTGACAAGGATGGCGGTGGTACACTAACAGCTCAGGAGATCATCGACT
ACTTGGATTCTCAAGGCTGCAAACTAGCTGAGAATGAGAAGCAGGAGATC
CGTCGCTGGGTGAATATTGTTGACAGGAGCGGAGATGGTGCCGTGGGTAC
CCAAGAATTTATCGCCTTCATGAAAAAGATGCAAGTTTTCCGGAAGTATG
ACAAGGATCGTACCGGCTTCATCACGAAGGATGAAATACAACAGGGCGTG
TCCGAAATGGGCGCGGGGGTAGAGATGGAGGAGATGCTGATGAAATGTGA
CACTAACGGGGATGGAAAGATCAACTACGAAGAGTTCATTCTACTTCTTC
TGGCAATGGATCCCAAACTGTCAGGTCTACCGGAGGAAATAGACCCGCAC
GAACAGGTTAGACTATTCTTGCAAAGTGACAAGGATCACAGCGGAACAGT
CACCGCTCAGGAGATCATCGACTTCTTGGATTCTGTCGGCTTGAAGCAAG
CTGAGAATGAGAAGCAGGAGATCCGTCGCTGGGTAAAGATTGTTGACAAG
AACGGAGACGGAGACGGAGCCGTGTGTGCCGATGAATACCTCAACCTGAT
GGGAAAGATTCAATATATGAAGATGCACTTTGACAAGGATGGTAGTGGCT
TCATCACCCGGGATGAACTACGCCAGGTAATGATGGGCTATGAAGATTCG
GCAGAAATAGAGGAGTTAGTGATGGCATGTGACGCTAACGGAGATGGAAA
GGTTAGGCTTATAAACTTTCAAAATACCCTCCTCCTCATCGAGATTTACT
GTAACGTTAACCGAGGCTACTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| BlTCONS00062340-exon-Sc0000049-1564993656:623236..623381 | BlTCONS00062340-exon-Sc0000049-1564993656:623236..623381 | Branchiostoma lanceolatum | exon |
| BlTCONS00062340-exon-Sc0000049-1564993656:622319..622470 | BlTCONS00062340-exon-Sc0000049-1564993656:622319..622470 | Branchiostoma lanceolatum | exon |
| BlTCONS00062340-exon-Sc0000049-1564993656:621793..621927 | BlTCONS00062340-exon-Sc0000049-1564993656:621793..621927 | Branchiostoma lanceolatum | exon |
| BlTCONS00062340-exon-Sc0000049-1564993656:618477..621175 | BlTCONS00062340-exon-Sc0000049-1564993656:618477..621175 | Branchiostoma lanceolatum | exon |
| BlTCONS00062340-exon-Sc0000049-1564993656:618019..618129 | BlTCONS00062340-exon-Sc0000049-1564993656:618019..618129 | Branchiostoma lanceolatum | exon |
| BlTCONS00062340-exon-Sc0000049-1564993656:617699..617812 | BlTCONS00062340-exon-Sc0000049-1564993656:617699..617812 | Branchiostoma lanceolatum | exon |
| BlTCONS00062340-exon-Sc0000049-1564993656:616682..616879 | BlTCONS00062340-exon-Sc0000049-1564993656:616682..616879 | Branchiostoma lanceolatum | exon |
| BlTCONS00062340-exon-Sc0000049-1564993656:615958..616077 | BlTCONS00062340-exon-Sc0000049-1564993656:615958..616077 | Branchiostoma lanceolatum | exon |
| BlTCONS00062340-exon-Sc0000049-1564993656:614901..615744 | BlTCONS00062340-exon-Sc0000049-1564993656:614901..615744 | Branchiostoma lanceolatum | exon |
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000049 | genome | Sc0000049:614901..623381 - |
Properties
| Property Name | Value |
|---|
| GeneID | BlCUFF030680 |
|
