BlTCONS00062336 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00062336
Unique NameBlTCONS00062336
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000049:609917..613821-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00062336 ID=BlTCONS00062336|Name=BlTCONS00062336|organism=Branchiostoma lanceolatum|type=mRNA|length=3905bp|location=Sequence derived from alignment at Sc0000049:609917..613821- (Branchiostoma lanceolatum)
AAAACAAAGGTGAAACTCGATAATGGGCATCCTAGCGGTTTCTTACGGTG
CTCCAGCGGAAATTCAATGTTTGGGGTGTAGTTTTCAGGTTTCAAATGCG
TGTTGACTGATAATGCATTTTAAAAACATTCAACTGTCCTGGCCAGCCAT
CAGTATTTTGAGAAGATCCCAAATGAAGTAAACAGTGACGTCTTTATCTA
ATGTATTTATTGACAGTTACCTTGCGTTAGACAGCTATTATCGTCTCATA
AATTATGTATTTCAGCAACACGTGGTTTTGGTTGCTAGCGCACAATTATC
CACCCGCGCTACATAATCATCAGATCAGAACAAAACAAGACTGTATTCGT
ACTGACACGCGAACTGTGGACGCGACGTACCTCTACCCAAGACTTGTGAC
TCAACTTACTATTTCATCAACATGGCTGGGACAAAGGTACTTATATTCAC
ATAACAGTTGTAATATATACACATTTCGAAAATCATATAACTGAATGCAT
CTTCCTGCTGTTTAAATTTCTGGACAATTTTTTCCATTCTTAGAGTATGC
CATTCTGTGAATCAGAAAATATCTTTCTCTGTCTTTTTTTCTGTAACTAG
TTGGAAAAATGTTAACGGTGTAAGATGAGAATGAAGAAGAACGGTACATA
TTTTGGAGATAACATTGAACAAAAAAGCTGCAGGATATACACGGATATTA
TGCTATGGCAATAAGGTATTTGAGTGTTAACAAAGCACGTTTATGAAAAC
AATGTTAAGTAAAACGTTGTCATACCACAACAAGATATGAGTGTCATCGA
CAATTTGCACGTTACCCCACGTAACCCTGTAATGATTTTGATCTCTGTTG
TTGGTCGTTAATAATTCATTGAGAATTGTCATACAAAAAAGACGGTAGGC
TGGAAACTTTGTCCTTGTGAGCAAACCAAGATAGGAAAAATGACTATTCG
CGTTTTTGTTCTAATTTTTTGCTGATATATCAAATTGTCATGTATTTGAT
GTACTATCAGAAAAAAAACACAGAAAATGGACAGATCGACCAAATTAATC
AAGGAGAGGTTTCCTTTTCAAATGATAAATGACGCATACGTCTTTGCGTG
TGATTGTCGATATGCTTTTTGTCACGCTAACTCAGGGACACACGAGCAGT
GACCAACTGACAGAGGAACAGATCGCTGAGTTCAGGCAGGTTTTCTCGAT
GTTTGACCAGAACGGTGACGGCCACATCACCACTGCTGAGCTGGGAAGTG
TGCTGCGAGCTCTGGGGCAGAACCCGACAGACGCCGAGCTGCGGGTACGG
TCATGCTTTGTTCTGCATGTTTGTTTACTCAATAGAATGCTTGATCAAGT
TATTTCATAATACCAATGAGAACTGAGAAAAATGAAGAAAAAGAATGTAA
ATAAAAGAATAAAAAAGATACCAATAAGAAACAAGAACTACAAAATATGA
TAAAGCTAATGAATATGGCGACATTGATACCTTAAATGGCTTAAAAAAAG
AATACTAGCAATTAACAATGAATGTTGAGGAGAAACCAGCAATGTAAGAA
CGTACTGCAGAATAGCAAGACAAAAGAACAATGGTATTAATGAGAAATGT
TACATTTTGAACATATAGATATCACTTTTAAGTGATAAAAAAGTTTAAAG
TTGTAACATTTTTTTGGTCTCTGGATCTTTGTTCATCTGTGCAATCAACA
GACTCAGATGGTTTTCGTTAACTAAATGAGATCCCACTACCAAAATTATA
TTCTGTAAACTACCACAGCCAAGATCCGTATCACATATGTGAACTACTGA
TTAATTTGCATATTGATATTTCGTAGGACATGATAAGAAAGGTTGACGTG
GATGGAGATGGAACCACCAACTTCTCGGAGTTCCTGCGCCTTGTGGGTCG
GAAGAGCTCCAGAGAGAAGACAGAGCAAGAGCTTCAGGATGCGTTTCATG
CATTCGACAAAGTAAGGCCGAGGAAAAGGAGTATTTCCGGTTACCCGACC
GACCCTAGCAAAAACCTGCCAACCCTAGTCTTATTTTGTTGACCCGCTAA
CACTGTCCTGATGCTGTCTAGCGTTGCAATCTTAAACAGTATTTCTTGGG
TCACTTCGACTGCACTTTTAAAAAAAGAAGAAAGAGAACCCTTACCCAGC
GACACTAATTTATGAGTACTGTAACCGGAATCACAACATTTTCTATTATG
CCTAACGGCATGTCATGAATTGTTTGATAGTACCTAGCCTCCTGTACAAC
CCTTCCGGGTGGCAGGCCAGTAGCTTTTTTCGCCGATTTGCGCTGTTTTC
TGATTGCTCGTGTACTCTAATATATATGCTTCTAGAGTTGGCGCACTAAT
CAAGCTTGGTCATATTAGAACACTAACTTGCGAACGATTAGAAATAGCGC
AAATCAACCAAAGGGCCATAGAAAGCCACCAGCCATCCAGAATGTCTGCG
TATAAGGCTGGGTAAGGATGATACCACAGAACCAAAGGCAATGGGTGTTT
AAAGCCATATTTTGTATGCAAAGTAAACTTAAAAGTCGATTTTCTTTTGT
ACATGTAACTAAATCCCGCTTTAGAGTTCTCATTTAGGTTCATTTCAGCA
CCAAGGACAGGGAAGTAACATTATCATTGACATTTAAAAAGTCCATATAC
GTTCAATGTAAGAATACGATTTTGGGGATCGATGGGACACCACGTACAAA
GGACGAGACAAAAGCTAAGAGGTGTAACTGTAGTATGATATCTCTGAGTG
TATTGTCTGGGAAGACTCAGTGGACTGGTTTGAACCGGCTGGGCTATACC
ATTCTATGCACATATGCGGGGCTGCACATTGGTAACGTTACCTCGCACTA
TAGCCAAGCAGAAATGAAAAATAAAACACAAAAATGAAAATATTTGACGG
ACATGCAACCACTCTCGAACCACTAATTGCAGTACTGTCATTGGTTGGAC
AGTTAATTGTGATGGACAGTCAGTATCGGTCTATTTATTTATCTTGCTGC
TCAACGTTTCCAGGATGGCAGCGGGTACATCACCCAGACAGAGCTGCGTC
ACGTGGTGTCCAGCCTGGGGATGGAGTTGACGGATGAAGAGCTGATGAAG
ATCATGCGGGAGGCTGACAGGGATGGAGATGGTCAGGTGAGGACCAGGGA
CAGAACTATGTGTCTCGTTTTGTACGATGTGACCTTCTGTACTACTTACG
CAGTCATGTGGAATATAGATTACGCAGCCTTTTACAATTTTCCTGGTTAT
GATATTTGACCATGTACAATGTCCGGGTAGAAATGGGGATCTGGCAGATC
GGCGATTCTACCGGCAGAGATAGCGATCAGAGTCTCTGTCGGGATCTCTA
CTGGTAACGTTACACGACAGAATTACCGATTGTACTAGTAAAGATCCTGA
TCGTGATCTCTGTCCACAGAGGCTCATGTTTACATGGCATGGTACAATCG
CCGATTGTACTGGAAGAGATCCTGATGTCTTGACAGAGGCTCCGATCACG
ATTTCTACCGGAAGAATCGCCGAATCATCAAGTTCTACCTGATTGCGATC
TTTACCCTCGCATATACATTAGATGTTACAACAACAACAAAAATTCAAGG
CTGAAGAAATGTAAGAAAATTAGTAGCCGTATTAAATGAAACTTGTGACG
GTTCTTCGTAACCCCCGACTCACAACTTTTTTAAATGTTTTATTTCCTCT
ATAGATCAGCTATCAAGAGTTCGTCAAGACGTTGGGCGTGAAATGAAGCT
GCCGACTACATACATGCCTCTCAGCTATGTTGTGTAGAAAAATAAAAGAT
CCTTAGGTGTAACACACCAGCTTCAGTGTGACTTATACGACATACCGGAT
TGCTTTGACGTAAATGATAAGGAAAACTTGGCAATAAAGAACATGTAACT
GTAAG

Coding sequence (CDS) from alignment at Sc0000049:609917..613821-

>BlTCONS00062336 ID=BlTCONS00062336|Name=BlTCONS00062336|organism=Branchiostoma lanceolatum|type=CDS|length=474bp|location=Sequence derived from alignment at Sc0000049:609917..613821- (Branchiostoma lanceolatum)
ATGGCTGGGACAAAGGGACACACGAGCAGTGACCAACTGACAGAGGAACA
GATCGCTGAGTTCAGGCAGGTTTTCTCGATGTTTGACCAGAACGGTGACG
GCCACATCACCACTGCTGAGCTGGGAAGTGTGCTGCGAGCTCTGGGGCAG
AACCCGACAGACGCCGAGCTGCGGGACATGATAAGAAAGGTTGACGTGGA
TGGAGATGGAACCACCAACTTCTCGGAGTTCCTGCGCCTTGTGGGTCGGA
AGAGCTCCAGAGAGAAGACAGAGCAAGAGCTTCAGGATGCGTTTCATGCA
TTCGACAAAGATGGCAGCGGGTACATCACCCAGACAGAGCTGCGTCACGT
GGTGTCCAGCCTGGGGATGGAGTTGACGGATGAAGAGCTGATGAAGATCA
TGCGGGAGGCTGACAGGGATGGAGATGGTCAGATCAGCTATCAAGAGTTC
GTCAAGACGTTGGGCGTGAAATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062336BlTCONS00062336-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062336-exon-Sc0000049-1564993656:613386..613821BlTCONS00062336-exon-Sc0000049-1564993656:613386..613821Branchiostoma lanceolatumexon
BlTCONS00062336-exon-Sc0000049-1564993656:612528..612686BlTCONS00062336-exon-Sc0000049-1564993656:612528..612686Branchiostoma lanceolatumexon
BlTCONS00062336-exon-Sc0000049-1564993656:611861..611995BlTCONS00062336-exon-Sc0000049-1564993656:611861..611995Branchiostoma lanceolatumexon
BlTCONS00062336-exon-Sc0000049-1564993656:610686..610808BlTCONS00062336-exon-Sc0000049-1564993656:610686..610808Branchiostoma lanceolatumexon
BlTCONS00062336-exon-Sc0000049-1564993656:609917..610117BlTCONS00062336-exon-Sc0000049-1564993656:609917..610117Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000049genomeSc0000049:609917..613821 -
Properties
Property NameValue
GeneIDBlCUFF030681