BlTCONS00062057 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00062057
Unique NameBlTCONS00062057
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000049:1022035..1023950+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00062057 ID=BlTCONS00062057|Name=BlTCONS00062057|organism=Branchiostoma lanceolatum|type=mRNA|length=1916bp|location=Sequence derived from alignment at Sc0000049:1022035..1023950+ (Branchiostoma lanceolatum)
AGCCACCAGAGCACTGGAAACAGGTTAGGGCTACAGCTATACATTCTGTA
GGACTCTTTTTAGACGCCGTAAATGGTAGAAATTGGCACCCTGCATCTCT
GTGGCCTGCTGACTCATTTGGCAAATGCATATGATAGCCAATTTTGCTCA
ATTCTTAAATCATCGACTTGGTTCCAAGAGCTGTATAGCAGAGACTAGGC
AAGGGCTATTTCAATTCTATTAAAGGCTTCCAAAGCATCATCAGGACGTT
GAAACTGGAAATGGTCAGTACAATTGCGCGGATGTGGTCAGTACATTGAA
AATACATAGAAACGTTATGATACTGTTTGAGAGTCACTGCTTTGTCTTAC
TCCGATACATTGTGAGCGCCTGCAATTACAAATCAGGAGCCAAGACTGTT
GCCAGAGTGTATTCTTTTTTCAATATGAAACGCTTTCTCCAAGTTTGATA
TGGCTACTTCGTTGCGCTACATTGCAGGACATCGTTGCAACGTTTAACCG
CCACGCCGGGCTGAACAGAGATGACGCCAAGCTAGCGTTCCTAAGACACG
TCAGCACATGGCCCACCTTCGGTTCAGCATTCTTTCACATTGAGGTAACG
TTACATGTCATGAATCTCCAAGCAGATGTATGGCTTTGTTGGTTGATCCT
TTCACACCTCGTGCCTTACAGTGATACATTTTATTTTCACTAGACGTCTC
TGAACAGACAAGCTACATCATCACACGACGAAGTAATCTACTTCCCCGGC
TGATTAAGAGAAAACTGAATAGTCAATAGACCCATGTATGGCCGTTCTAG
GTACATTGTTGTTCTAGTGTCCTCTATACCATGTGTTCTTTGTTTTTCGT
ACAGAGACACGACTACCGCAAGTACCCGGAAAAACTCATGGCCGCCGTCA
ACAGACGAGGACTAATGTTCATGGACCAGAACAGTAAGGTAACGTGTAAA
ACTTCTGTCACAAGACGGCAGTGAAATAGACAGGTGTCAATCTAAATCCT
GATCCTAACTGTACATCACAATCAGCAGTTCAACCAATGATATCATGGCT
AGACCAATGAGAGAGTGGATTCATGTCCGTCAAATATTTGTTATGTCTTT
ATTTTGCTTTCCTACGTTTTGCCGGAGGGAATGGTCTACTATATGGTGGG
TTGGAATCTTCTTGCCTGGATAGTTTCTGAATCTACGATGATAATATTTG
AAACAGCGCTGTACGTTTTTGTGTTGACACGTAGAACACGATCGTCAGTC
TGGCATTTGACGAGGTTGAGACGAGCGGCGACACCAGGCACCTGTGGGTG
ACGGGGAACGGCCTGGAGAACACATGGCAGCTCACGACGTCGGCGGTAGG
AGGCGCTTGTGATTCGTCCACTGACCAAATTATATCTCCCCCTTCCACTC
TCTTTATAACATTTTTACAATACTGTATCACATGGTTCACATCTATGATG
ATTTTGATATTTCATTTCCGTTCTTTCTTCTTTCACAGGCATCTCAGATC
GACGACTTAGTGAAAGCTTATCAAGATTTTCGTGAGAAAGAATCTTCTCT
TACCAACAAAAGTGTCCTGGTATAAAGTATTAATACATGTAATAAACAGA
AGACAACAGGTGGAGCACAAAGCTAAGGGCACAACGTTTCTTCTCATCAG
TTCCCGGAGAAAAGAAATCTATGATAGTTCACGACAGGTTTATTTGTCAT
CTTGAGAACTTTTACGTTGTGTACATGTAACCAAAACTTTCCTAATGACC
TTCATCGTGTTGTATATTTGCCGGACGGATGTAATGTTCTACTTATCTAA
CGTTAGGTAGTTTACCACTAAACTCAGAAGCGAAATCATATTCACAACTC
ATAGTAGGCAATGGAACATAGATGTACAAAATAAACTCGTTTTTCTACAA
TGTACTTCACCTCACT

Coding sequence (CDS) from alignment at Sc0000049:1022035..1023950+

>BlTCONS00062057 ID=BlTCONS00062057|Name=BlTCONS00062057|organism=Branchiostoma lanceolatum|type=CDS|length=423bp|location=Sequence derived from alignment at Sc0000049:1022035..1023950+ (Branchiostoma lanceolatum)
GCCACCAGAGCACTGGAAACAGAGGACATCGTTGCAACGTTTAACCGCCA
CGCCGGGCTGAACAGAGATGACGCCAAGCTAGCGTTCCTAAGACACGTCA
GCACATGGCCCACCTTCGGTTCAGCATTCTTTCACATTGAGAGACACGAC
TACCGCAAGTACCCGGAAAAACTCATGGCCGCCGTCAACAGACGAGGACT
AATGTTCATGGACCAGAACAGTAAGAACACGATCGTCAGTCTGGCATTTG
ACGAGGTTGAGACGAGCGGCGACACCAGGCACCTGTGGGTGACGGGGAAC
GGCCTGGAGAACACATGGCAGCTCACGACGTCGGCGGCATCTCAGATCGA
CGACTTAGTGAAAGCTTATCAAGATTTTCGTGAGAAAGAATCTTCTCTTA
CCAACAAAAGTGTCCTGGTATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062057BlTCONS00062057-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062057-exon-Sc0000049-1564993656:1022035..1022057BlTCONS00062057-exon-Sc0000049-1564993656:1022035..1022057Branchiostoma lanceolatumexon
BlTCONS00062057-exon-Sc0000049-1564993656:1022510..1022628BlTCONS00062057-exon-Sc0000049-1564993656:1022510..1022628Branchiostoma lanceolatumexon
BlTCONS00062057-exon-Sc0000049-1564993656:1022889..1022972BlTCONS00062057-exon-Sc0000049-1564993656:1022889..1022972Branchiostoma lanceolatumexon
BlTCONS00062057-exon-Sc0000049-1564993656:1023269..1023379BlTCONS00062057-exon-Sc0000049-1564993656:1023269..1023379Branchiostoma lanceolatumexon
BlTCONS00062057-exon-Sc0000049-1564993656:1023523..1023950BlTCONS00062057-exon-Sc0000049-1564993656:1023523..1023950Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000049genomeSc0000049:1022035..1023950 +
Properties
Property NameValue
GeneIDBlCUFF030595