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Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000049:1018174..1023950+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BlTCONS00062054 ID=BlTCONS00062054|Name=BlTCONS00062054|organism=Branchiostoma lanceolatum|type=mRNA|length=5777bp|location=Sequence derived from alignment at Sc0000049:1018174..1023950+ (Branchiostoma lanceolatum)
CCCAACTCCACGGGACTTCATACCCGCTCACAAAACAGGGCCGCCTGAAG
AAAAAACACAGAGAGGAACTCTGAGAGATTTTTAGGTAAATAAGTGGTGA
AGGAAGAACTGCTAAGGGTGATTTTACGTCTCAAAGGAAGTCTGTGTTTC
TGAGGAGAGTTTAGGATGTCCATGTCGCCGTTTTGTGATGTCACAACATG
GGAGGAGTTTAGCTACGGCCACTTCAGGTACGGTACACAGTGGGTTCGGT
CTGTGTTTCTGCAAAAAGTCGTCCGTGAAAACAGCGTATCTTTCTTGTTT
TGCTTAATTTTGCACTACAACTGTAACGATATGGTACTAGTACTAAACCA
CGTTGTACTACTCTATACTGTTGTAAAATGAGCGGAATCAAAAGGTGAGA
TTAAGTGCTATCATGGTTATTAGATGTCGTTTGTGATGCCTGTCATTCAA
ACAGGGATCCAGACCCTACCACTCCTGACGAGGGGCGTACTGGTTGCTGT
GCAAGGGGTAGGACGGAAAAGGAACAGGAGATTTGGAGTTTCTCCAGTAA
ACCTCTCGGCAAAGCCCTGCTGCGGACCGTGGCTGCCGACAGACAGTTGT
GTCAGGATGCCGTCACCATGTTCACGGACATTCTCCTCTACTCCGCCAGG
AAGTCTCTGAAGGACGTGTCCGAAGATACTCGACTGGTGGAACATATCTT
CAGACAGGTTATAAAACGGGTATGGATATATGCATGTCGTCCCCTGTCGC
ACCAATAACCTCCTTGGTCATCACACAGTACACATAGTCGACCGTGGCCT
CCCGACCTTCCCCAGACAATGCTTTGGAGTAAGTCGGCGCAAGGCCATCT
GTTGTTGGAAGTTGATCGGCCAGGTTGCCAGCCTATTCAATTGTAAATTT
TGACAAATCAAAGTTGTTTGTGGTTGGGAGTCTATCTGCGAGGCTCGGCC
TACGAGTCTTTATAAGTCGTCTGCGCCAGCCGACTAGAATAGGATGGATT
TCAGGCTACTCCCAACCCATTTCCGACTTTGGTTGGGGAGTGGTTGTGAC
CGTGGCTTTCATACTCATTCCACAGCTTTTATTCCTTCCAATCAAGAGCC
TCTCTTCCGCCACTCATCCAAGTTCAGAGAGACGCCTGCTTCCACAATAT
TATATGGTCTACTTGCTCTATACTTTTAACATGATGTTGTTTTTTGCACA
TATAGTGAAATGTACATTTTTTATCGCAGGAAAGTCTACAAGATGAACTG
TACTGCCAACTCGTCAAACAGCTGACAAACAATAAAAAGCGGTGAGTTTA
CACATTGATACTAAATGATAGTTATGACCATATGAATATGTTTGATACGC
AATGAAGATCGTATGAGCTTGTTTAACTTTTAGACCGTCTGCATCAATTC
AGCCAGATCTATTCCTACTTGCAGTTCCAATGAAGACCGCTGCTGGGAAC
TTCTGTGGTTGTGTGCTGGGTGTTTTCCTTGCAGGTAGGTATAGCATAAC
AAGTATATTAAATGAATCACATATCATAAGATGTGACAAACTATAGCTAT
GACTGTATGATACGATCGCATATAGTTCATTAATCTTTTTTGTCGTCTCT
GTCATAACTAACATTACGGTTAGCATCATAATTGTGTCATTGTCTGTAGA
ATCATTTGTCAAATCACTTAATGACTGATGTTTCGACTTCCTGAGTTATG
TACATGTATAATGTTACATGCTTCGAATCATGATCCCACAGCCAGCCTCT
GAGGTTTCATGTGACGTCATTCCTACTTCACAAACGACGCTCTCCTTTGG
CACGTGACTGTCTCCTCAGACTGGAAAGGACCGTACAGTAAGTACATATA
TATCGAAATCGAAGTGGCTTAAACTTTTCTGTAAAACGCCACAGTCATAC
GAGTTTTCAATCCAGGCTTCTAATATGCAGATAACCATCATTTTGTAAAA
ATGTCACGTTAAATAGTTGTGTTAAAACTCTTTCCCCTTGTGTCTAAGGT
ATTATGTATATATTGTCCTTGCTCACAAATAAGTCTTTTGTTGTGTCTTT
ATTGTATGTTAACTTCCCGTTTATGTAAATAGATTTGCAAATTTAAGTAA
TTTCTGTTTTCTCAATCATAGACTAGGCAACCGACGCTCCCCTCCCCACC
CTCTTGAACTACACACAGTGCAGAAGAAAAGTGGTTCATGGGGACAAATA
GTGATCTTGCCGGACAAGTCTACAGTGGTACTGCGTTTCTTTGATTAGTT
CGTCTAAATGGTGTTGTGATGAAATATTCATCCGTTAGTGAAGTAGGGTG
GTGATAAAGATGGAGGAAATAGCAAAAAGCAATCCTGGATGTTTTCTAAC
TTTCGTAACTTTGTTGATTGGTTGCATGTCCATGGCTGCCATCTAACAGA
TTTCATGTGTACTGCAGGCGATAGCTGTAGAATCCTCCAGCCGCGGAGGT
GACCTGTGCCTTGACGTCACCAATAAACTTGGACTCAAGACGATTGGCGG
AATTAGTCTGTACTGCAGGGTAGCAGACAAAGGTGAGTATTATCGGACGA
TATATCTTTCAAATACAGCAGCGTCGCTGAATATAGATATGCTACAATAT
ATTATGATGTGATGCGTTCATGGTTAAGTACTAGTCATAACGAATGGTTA
TATCAGAACATTGGCCTAGAATACATTAGTATCCGCTGTATCTAAGTGTG
TAAATCTGTTTCAAACACCTTTGCAGTTGTCAGCATCCCACATGGAGAAT
ACTACTTTGACTTCCTCTGCAGTATCAGACCGCTCGCAGAATGGCTCAGC
TCGGAAGGTGCCTTTCTCCTTCCTCTTATTTTTATTCCACCATGTCTCGG
GGATTATTGCTGTCTGTGCATACGTATTGCGATATGTTTATAGTAAGATT
ATTGGAATATGGGAAAGCCTTGTTCGAATCAATCAACACAACGTCATATA
TGACGTGTCCTAGTGCGGTACGAAGGAACGCTACTTCCTTACATGGACCT
GTCCTTGGTGCTGAACTTGCCATCTGAACGGGTTACCGTAGCCCATAGCT
ACGAAGGCCCACAACGACAAAATTTGTCGCCCCTTTAAACAGTATCATCT
AATTGGAGAGAACACGCCGAGTACGACCTGCTGTTCCGAAGGAAAGTGTG
GACTGACGTCATGGTGGGAGAAGATTCTGTGGCAGACATGCGCATGCACT
TCTTTCAGGTTTGTCCGCAGTTTTCACTACGCGCGCTTGAAGCGCAGTGA
CATACAAATATGAACGCCATTATCAGAACCATTACTTGACAGATTGATTG
TTTTGTTTATTTGTTTTTTTTTTAATACAGCCAATTCGACGACCGGTTTT
AATCCATCCCAACAATACGGGGGTTTGTTCGGCTCTTTAAAATCACAACT
GCAAGTTATTTTTCGCAAAGGATTTCGGCATGTTTTGTGAAATTCCCTAC
AATGTCGCATGAGAGCGCAATTACCACAGTTTGTCTTGTAACAGGAACTG
GAGTCGTTTCTGAGCGGCCACCACAAGTGCAGTAAGAGCGAGGCTGTCCA
GCTGGCGGCGTACTTGTACAGGGTCAGGTTCGGACAGGCTGGCTTTGAAC
TTCACGACGACAAGAAAACTGCGTAAGTCCTGGATACTATGCATATAGAT
ATCAACATGTCTTTGCACAAATGTATGTTTCAAACGACTTCTTTTCACCT
AATACCTCCAAGCTAGATTGAATGTTATAATTATCAATGAACTTGAGGAA
CTTCTGTTTCTGTCGCTTATACAGTGTTATTAACGAAACTATGCTCATAA
TTGTTATCATTTTTTAGAGAGGTTCTGAAAGATCTCATTCCAAGAGACCT
ACTACAGATCGAGCCACCAGAGCACTGGAAACAGGTTAGGGCTACAGCTA
TACATTCTGTAGGACTCTTTTTAGACGCCGTAAATGGTAGAAATTGGCAC
CCTGCATCTCTGTGGCCTGCTGACTCATTTGGCAAATGCATATGATAGCC
AATTTTGCTCAATTCTTAAATCATCGACTTGGTTCCAAGAGCTGTATAGC
AGAGACTAGGCAAGGGCTATTTCAATTCTATTAAAGGCTTCCAAAGCATC
ATCAGGACGTTGAAACTGGAAATGGTCAGTACAATTGCGCGGATGTGGTC
AGTACATTGAAAATACATAGAAACGTTATGATACTGTTTGAGAGTCACTG
CTTTGTCTTACTCCGATACATTGTGAGCGCCTGCAATTACAAATCAGGAG
CCAAGACTGTTGCCAGAGTGTATTCTTTTTTCAATATGAAACGCTTTCTC
CAAGTTTGATATGGCTACTTCGTTGCGCTACATTGCAGGACATCGTTGCA
ACGTTTAACCGCCACGCCGGGCTGAACAGAGATGACGCCAAGCTAGCGTT
CCTAAGACACGTCAGCACATGGCCCACCTTCGGTTCAGCATTCTTTCACA
TTGAGGTAACGTTACATGTCATGAATCTCCAAGCAGATGTATGGCTTTGT
TGGTTGATCCTTTCACACCTCGTGCCTTACAGTGATACATTTTATTTTCA
CTAGACGTCTCTGAACAGACAAGCTACATCATCACACGACGAAGTAATCT
ACTTCCCCGGCTGATTAAGAGAAAACTGAATAGTCAATAGACCCATGTAT
GGCCGTTCTAGGTACATTGTTGTTCTAGTGTCCTCTATACCATGTGTTCT
TTGTTTTTCGTACAGAGACACGACTACCGCAAGTACCCGGAAAAACTCAT
GGCCGCCGTCAACAGACGAGGACTAATGTTCATGGACCAGAACAGTAAGG
TAACGTGTAAAACTTCTGTCACAAGACGGCAGTGAAATAGACAGGTGTCA
ATCTAAATCCTGATCCTAACTGTACATCACAATCAGCAGTTCAACCAATG
ATATCATGGCTAGACCAATGAGAGAGTGGATTCATGTCCGTCAAATATTT
GTTATGTCTTTATTTTGCTTTCCTACGTTTTGCCGGAGGGAATGGTCTAC
TATATGGTGGGTTGGAATCTTCTTGCCTGGATAGTTTCTGAATCTACGAT
GATAATATTTGAAACAGCGCTGTACGTTTTTGTGTTGACACGTAGAACAC
GATCGTCAGTCTGGCATTTGACGAGGTTGAGACGAGCGGCGACACCAGGC
ACCTGTGGGTGACGGGGAACGGCCTGGAGAACACATGGCAGCTCACGACG
TCGGCGGTAGGAGGCGCTTGTGATTCGTCCACTGACCAAATTATATCTCC
CCCTTCCACTCTCTTTATAACATTTTTACAATACTGTATCACATGGTTCA
CATCTATGATGATTTTGATATTTCATTTCCGTTCTTTCTTCTTTCACAGG
CATCTCAGATCGACGACTTAGTGAAAGCTTATCAAGATTTTCGTGAGAAA
GAATCTTCTCTTACCAACAAAAGTGTCCTGGTATAAAGTATTAATACATG
TAATAAACAGAAGACAACAGGTGGAGCACAAAGCTAAGGGCACAACGTTT
CTTCTCATCAGTTCCCGGAGAAAAGAAATCTATGATAGTTCACGACAGGT
TTATTTGTCATCTTGAGAACTTTTACGTTGTGTACATGTAACCAAAACTT
TCCTAATGACCTTCATCGTGTTGTATATTTGCCGGACGGATGTAATGTTC
TACTTATCTAACGTTAGGTAGTTTACCACTAAACTCAGAAGCGAAATCAT
ATTCACAACTCATAGTAGGCAATGGAACATAGATGTACAAAATAAACTCG
TTTTTCTACAATGTACTTCACCTCACT Coding sequence (CDS) from alignment at Sc0000049:1018174..1023950+ >BlTCONS00062054 ID=BlTCONS00062054|Name=BlTCONS00062054|organism=Branchiostoma lanceolatum|type=CDS|length=642bp|location=Sequence derived from alignment at Sc0000049:1018174..1023950+ (Branchiostoma lanceolatum)
ATGGTGGGAGAAGATTCTGTGGCAGACATGCGCATGCACTTCTTTCAGGA
ACTGGAGTCGTTTCTGAGCGGCCACCACAAGTGCAGTAAGAGCGAGGCTG
TCCAGCTGGCGGCGTACTTGTACAGGGTCAGGTTCGGACAGGCTGGCTTT
GAACTTCACGACGACAAGAAAACTGCAGAGGTTCTGAAAGATCTCATTCC
AAGAGACCTACTACAGATCGAGCCACCAGAGCACTGGAAACAGGACATCG
TTGCAACGTTTAACCGCCACGCCGGGCTGAACAGAGATGACGCCAAGCTA
GCGTTCCTAAGACACGTCAGCACATGGCCCACCTTCGGTTCAGCATTCTT
TCACATTGAGAGACACGACTACCGCAAGTACCCGGAAAAACTCATGGCCG
CCGTCAACAGACGAGGACTAATGTTCATGGACCAGAACAGTAAGAACACG
ATCGTCAGTCTGGCATTTGACGAGGTTGAGACGAGCGGCGACACCAGGCA
CCTGTGGGTGACGGGGAACGGCCTGGAGAACACATGGCAGCTCACGACGT
CGGCGGCATCTCAGATCGACGACTTAGTGAAAGCTTATCAAGATTTTCGT
GAGAAAGAATCTTCTCTTACCAACAAAAGTGTCCTGGTATAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| BlTCONS00062054-exon-Sc0000049-1564993656:1018174..1018258 | BlTCONS00062054-exon-Sc0000049-1564993656:1018174..1018258 | Branchiostoma lanceolatum | exon |
| BlTCONS00062054-exon-Sc0000049-1564993656:1018823..1018892 | BlTCONS00062054-exon-Sc0000049-1564993656:1018823..1018892 | Branchiostoma lanceolatum | exon |
| BlTCONS00062054-exon-Sc0000049-1564993656:1019403..1019464 | BlTCONS00062054-exon-Sc0000049-1564993656:1019403..1019464 | Branchiostoma lanceolatum | exon |
| BlTCONS00062054-exon-Sc0000049-1564993656:1019598..1019657 | BlTCONS00062054-exon-Sc0000049-1564993656:1019598..1019657 | Branchiostoma lanceolatum | exon |
| BlTCONS00062054-exon-Sc0000049-1564993656:1019915..1020010 | BlTCONS00062054-exon-Sc0000049-1564993656:1019915..1020010 | Branchiostoma lanceolatum | exon |
| BlTCONS00062054-exon-Sc0000049-1564993656:1020295..1020400 | BlTCONS00062054-exon-Sc0000049-1564993656:1020295..1020400 | Branchiostoma lanceolatum | exon |
| BlTCONS00062054-exon-Sc0000049-1564993656:1020591..1020705 | BlTCONS00062054-exon-Sc0000049-1564993656:1020591..1020705 | Branchiostoma lanceolatum | exon |
| BlTCONS00062054-exon-Sc0000049-1564993656:1020900..1020980 | BlTCONS00062054-exon-Sc0000049-1564993656:1020900..1020980 | Branchiostoma lanceolatum | exon |
| BlTCONS00062054-exon-Sc0000049-1564993656:1021266..1021381 | BlTCONS00062054-exon-Sc0000049-1564993656:1021266..1021381 | Branchiostoma lanceolatum | exon |
| BlTCONS00062054-exon-Sc0000049-1564993656:1021668..1021795 | BlTCONS00062054-exon-Sc0000049-1564993656:1021668..1021795 | Branchiostoma lanceolatum | exon |
| BlTCONS00062054-exon-Sc0000049-1564993656:1021991..1022057 | BlTCONS00062054-exon-Sc0000049-1564993656:1021991..1022057 | Branchiostoma lanceolatum | exon |
| BlTCONS00062054-exon-Sc0000049-1564993656:1022512..1022628 | BlTCONS00062054-exon-Sc0000049-1564993656:1022512..1022628 | Branchiostoma lanceolatum | exon |
| BlTCONS00062054-exon-Sc0000049-1564993656:1022889..1022972 | BlTCONS00062054-exon-Sc0000049-1564993656:1022889..1022972 | Branchiostoma lanceolatum | exon |
| BlTCONS00062054-exon-Sc0000049-1564993656:1023269..1023379 | BlTCONS00062054-exon-Sc0000049-1564993656:1023269..1023379 | Branchiostoma lanceolatum | exon |
| BlTCONS00062054-exon-Sc0000049-1564993656:1023523..1023950 | BlTCONS00062054-exon-Sc0000049-1564993656:1023523..1023950 | Branchiostoma lanceolatum | exon |
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000049 | genome | Sc0000049:1018174..1023950 + |
Properties
| Property Name | Value |
|---|
| GeneID | BlCUFF030595 |
|
